Wall clock time and date at job start Mon Mar 30 2020 01:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99871 * 2 1 3 5 5 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 6 6 C 1.38339 * 120.07160 * 239.72232 * 5 2 1 7 7 C 1.37796 * 120.23865 * 179.68500 * 6 5 2 8 8 C 1.39789 * 120.26834 * 0.65323 * 7 6 5 9 9 C 1.38720 * 119.00814 * 359.62965 * 8 7 6 10 10 C 1.38115 * 120.47306 * 0.03523 * 9 8 7 11 11 C 1.51216 * 108.51069 * 180.02562 * 9 8 7 12 12 C 1.53747 * 104.52060 * 0.02562 * 11 9 8 13 13 N 1.39429 * 129.33546 * 179.67068 * 8 7 6 14 14 C 1.34775 * 124.94122 * 359.97438 * 13 8 7 15 15 O 1.21738 * 119.99842 * 359.95557 * 14 13 8 16 16 C 1.46166 * 119.99797 * 179.97438 * 14 13 8 17 17 H 1.08004 * 120.00022 * 359.97438 * 16 14 13 18 18 C 1.40123 * 120.00237 * 180.02562 * 16 14 13 19 19 N 1.30638 * 119.99795 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00422 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46962 * 90.00075 * 20 18 16 22 22 H 1.48504 * 109.47226 * 209.99972 * 20 18 16 23 23 H 1.48496 * 109.46909 * 330.00203 * 20 18 16 24 24 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 25 25 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 26 26 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 29 29 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 30 30 H 1.09004 * 109.47261 * 299.99863 * 4 2 1 31 31 H 1.09002 * 109.47153 * 60.00035 * 4 2 1 32 32 H 1.09001 * 109.46832 * 179.97438 * 4 2 1 33 33 H 1.08000 * 119.88188 * 359.97438 * 6 5 2 34 34 H 1.08004 * 119.86242 * 180.26228 * 7 6 5 35 35 H 1.08003 * 119.91985 * 180.02562 * 10 9 8 36 36 H 1.09004 * 110.42396 * 118.76481 * 11 9 8 37 37 H 1.08995 * 110.42612 * 241.23769 * 11 9 8 38 38 H 1.08998 * 110.30509 * 118.93055 * 12 11 9 39 39 H 1.08998 * 110.29891 * 241.06890 * 12 11 9 40 40 H 0.97004 * 120.00444 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 2.8325 -0.0412 2.1392 7 6 3.2883 -0.6855 3.2688 8 6 2.9572 -2.0240 3.4985 9 6 2.1590 -2.6871 2.5778 10 6 1.6993 -2.0343 1.4509 11 6 1.9514 -4.1063 3.0567 12 6 2.7326 -4.1854 4.3785 13 7 3.3151 -2.8532 4.5607 14 6 4.0844 -2.4831 5.6037 15 8 4.5228 -1.3490 5.6644 16 6 4.3926 -3.4435 6.6615 17 1 4.0035 -4.4496 6.6077 18 6 5.1919 -3.0587 7.7461 19 7 5.6621 -1.8416 7.8116 20 14 5.5852 -4.2858 9.0985 21 1 6.8330 -5.0151 8.7575 22 1 5.7690 -3.5644 10.3835 23 1 4.4664 -5.2534 9.2296 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7490 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7208 -1.2494 33 1 3.0970 0.9913 1.9651 34 1 3.9092 -0.1559 3.9763 35 1 1.0780 -2.5591 0.7402 36 1 0.8924 -4.2986 3.2289 37 1 2.3546 -4.8148 2.3331 38 1 2.0588 -4.4199 5.2026 39 1 3.5202 -4.9355 4.3080 40 1 6.2158 -1.5752 8.5622 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184590529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:17 Heat of formation + Delta-G solvation = -25.385454 kcal Electronic energy + Delta-G solvation = -20955.872249 eV Core-core repulsion = 17927.609163 eV Total energy + Delta-G solvation = -3028.263086 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.19133 -38.19136 -36.15908 -34.28280 -32.76440 -31.34853 -28.87717 -28.66077 -27.15425 -26.90948 -26.26891 -22.76656 -22.40399 -21.03961 -19.72698 -18.44795 -16.94008 -15.82353 -15.58364 -15.26794 -15.13153 -14.66256 -14.10180 -13.91540 -13.53324 -13.05079 -12.79170 -12.69029 -12.55912 -12.45365 -12.27450 -11.75429 -11.69599 -11.59351 -11.47656 -11.31079 -11.26482 -10.94897 -10.92276 -10.75763 -10.60781 -10.38230 -10.35849 -10.01877 -9.21947 -8.90711 -8.17345 -7.83344 -6.69685 -6.39988 -4.86216 1.99572 2.09138 3.04551 3.11255 3.14828 3.91852 4.20234 4.25647 4.50770 4.82261 4.91344 5.14367 5.19157 5.23330 5.44182 5.53709 5.54698 5.65142 5.67206 5.76482 5.82347 5.84095 5.87117 5.94347 5.94861 6.12446 6.17250 6.21678 6.29260 6.39083 6.41722 6.43401 6.48432 6.63887 6.93419 7.09255 7.23879 7.24518 7.33831 7.63454 7.97904 8.26965 8.80149 9.11837 10.30672 10.51172 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.035727 B = 0.004379 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.536558 B = 6393.006056 C = 6974.755299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.018 4.018 3 C -0.142 4.142 4 C -0.136 4.136 5 C -0.132 4.132 6 C -0.090 4.090 7 C -0.149 4.149 8 C 0.189 3.811 9 C -0.175 4.175 10 C -0.069 4.069 11 C -0.081 4.081 12 C 0.115 3.885 13 N -0.567 5.567 14 C 0.551 3.449 15 O -0.554 6.554 16 C -0.532 4.532 17 H 0.074 0.926 18 C 0.085 3.915 19 N -0.758 5.758 20 Si 0.914 3.086 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.263 1.263 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.119 0.881 34 H 0.139 0.861 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.102 -0.937 -12.698 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.018 4.018 3 C -0.199 4.199 4 C -0.193 4.193 5 C -0.134 4.134 6 C -0.109 4.109 7 C -0.171 4.171 8 C 0.088 3.912 9 C -0.179 4.179 10 C -0.087 4.087 11 C -0.119 4.119 12 C -0.009 4.009 13 N -0.289 5.289 14 C 0.360 3.640 15 O -0.435 6.435 16 C -0.567 4.567 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.386 5.386 20 Si 0.738 3.262 21 H -0.195 1.195 22 H -0.202 1.202 23 H -0.187 1.187 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.157 0.843 35 H 0.128 0.872 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.631 -0.238 -12.324 14.497 hybrid contribution 0.218 -0.725 0.761 1.074 sum -7.413 -0.963 -11.563 13.769 Atomic orbital electron populations 1.21879 0.94474 1.01703 1.01273 1.19292 0.95032 0.94643 0.92848 1.21938 1.01250 0.95348 1.01403 1.21881 1.01225 1.00042 0.96187 1.19321 1.02682 0.94157 0.97228 1.20827 0.97218 0.99316 0.93504 1.21055 1.03792 0.93093 0.99126 1.18678 0.92746 0.91728 0.88035 1.19983 1.04413 0.96228 0.97263 1.19902 0.99584 0.93659 0.95598 1.21036 1.00523 0.93929 0.96388 1.21779 0.96735 0.86021 0.96346 1.46592 1.50469 1.10385 1.21408 1.18325 0.77243 0.88723 0.79741 1.90600 1.54294 1.21507 1.77126 1.20890 1.32894 0.98019 1.04944 0.90772 1.25779 0.93935 0.95462 0.98421 1.69982 1.23543 1.17170 1.27925 0.86257 0.79554 0.80640 0.79757 1.19490 1.20198 1.18677 0.92620 0.93040 0.92681 0.92317 0.92985 0.92323 0.92677 0.93046 0.92621 0.86267 0.84325 0.87193 0.90487 0.90481 0.91136 0.91142 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 8.29 37.16 0.31 -1.17 16 2 C -0.02 -0.22 0.85 -155.66 -0.13 -0.35 16 3 C -0.14 -1.59 7.13 37.16 0.27 -1.33 16 4 C -0.14 -1.48 8.29 37.16 0.31 -1.17 16 5 C -0.13 -2.06 4.76 -104.57 -0.50 -2.56 16 6 C -0.09 -1.60 8.96 -39.71 -0.36 -1.95 16 7 C -0.15 -3.27 9.46 -39.16 -0.37 -3.64 16 8 C 0.19 4.22 6.62 -83.65 -0.55 3.66 16 9 C -0.17 -3.20 6.23 -104.24 -0.65 -3.85 16 10 C -0.07 -1.10 8.71 -39.61 -0.35 -1.44 16 11 C -0.08 -1.27 6.94 -27.24 -0.19 -1.46 16 12 C 0.11 2.15 6.20 -3.64 -0.02 2.13 16 13 N -0.57 -13.64 3.12 -114.54 -0.36 -14.00 16 14 C 0.55 15.79 7.72 -13.08 -0.10 15.69 16 15 O -0.55 -17.65 13.16 5.16 0.07 -17.58 16 16 C -0.53 -14.68 9.04 -35.69 -0.32 -15.00 16 17 H 0.07 1.86 7.11 -52.48 -0.37 1.48 16 18 C 0.09 2.31 5.50 -17.35 -0.10 2.21 16 19 N -0.76 -22.06 11.82 55.55 0.66 -21.41 16 20 Si 0.91 19.47 29.56 -169.99 -5.02 14.44 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.58 7.39 -51.93 -0.38 0.20 16 27 H 0.06 0.67 7.50 -51.93 -0.39 0.28 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.67 7.53 -51.93 -0.39 0.28 16 30 H 0.05 0.58 7.39 -51.93 -0.38 0.20 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.12 1.86 5.90 -52.49 -0.31 1.55 16 34 H 0.14 3.45 6.26 -52.48 -0.33 3.12 16 35 H 0.11 1.46 7.11 -52.48 -0.37 1.09 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -32.55 321.45 -8.44 -40.99 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.87 Total: 2.94 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -2.76 Total: -10.23 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.30 Total: -35.40 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.07 Total: -17.58 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.55 -8.44 -40.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184590529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.604 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds