Wall clock time and date at job start Mon Mar 30 2020 01:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99871 * 2 1 3 5 5 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 6 6 C 1.38339 * 120.07160 * 239.72232 * 5 2 1 7 7 C 1.37796 * 120.23865 * 179.68500 * 6 5 2 8 8 C 1.39789 * 120.26834 * 0.65323 * 7 6 5 9 9 C 1.38720 * 119.00814 * 359.62965 * 8 7 6 10 10 C 1.38115 * 120.47306 * 0.03523 * 9 8 7 11 11 C 1.51216 * 108.51069 * 180.02562 * 9 8 7 12 12 C 1.53747 * 104.52060 * 0.02562 * 11 9 8 13 13 N 1.39429 * 129.33546 * 179.67068 * 8 7 6 14 14 C 1.34775 * 124.94122 * 359.97438 * 13 8 7 15 15 O 1.21738 * 119.99842 * 359.95557 * 14 13 8 16 16 C 1.46166 * 119.99797 * 179.97438 * 14 13 8 17 17 H 1.08004 * 120.00022 * 359.97438 * 16 14 13 18 18 C 1.40123 * 120.00237 * 180.02562 * 16 14 13 19 19 N 1.30638 * 119.99795 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 120.00422 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46962 * 90.00075 * 20 18 16 22 22 H 1.48504 * 109.47226 * 209.99972 * 20 18 16 23 23 H 1.48496 * 109.46909 * 330.00203 * 20 18 16 24 24 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 25 25 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 26 26 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 29 29 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 30 30 H 1.09004 * 109.47261 * 299.99863 * 4 2 1 31 31 H 1.09002 * 109.47153 * 60.00035 * 4 2 1 32 32 H 1.09001 * 109.46832 * 179.97438 * 4 2 1 33 33 H 1.08000 * 119.88188 * 359.97438 * 6 5 2 34 34 H 1.08004 * 119.86242 * 180.26228 * 7 6 5 35 35 H 1.08003 * 119.91985 * 180.02562 * 10 9 8 36 36 H 1.09004 * 110.42396 * 118.76481 * 11 9 8 37 37 H 1.08995 * 110.42612 * 241.23769 * 11 9 8 38 38 H 1.08998 * 110.30509 * 118.93055 * 12 11 9 39 39 H 1.08998 * 110.29891 * 241.06890 * 12 11 9 40 40 H 0.97004 * 120.00444 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 2.8325 -0.0412 2.1392 7 6 3.2883 -0.6855 3.2688 8 6 2.9572 -2.0240 3.4985 9 6 2.1590 -2.6871 2.5778 10 6 1.6993 -2.0343 1.4509 11 6 1.9514 -4.1063 3.0567 12 6 2.7326 -4.1854 4.3785 13 7 3.3151 -2.8532 4.5607 14 6 4.0844 -2.4831 5.6037 15 8 4.5228 -1.3490 5.6644 16 6 4.3926 -3.4435 6.6615 17 1 4.0035 -4.4496 6.6077 18 6 5.1919 -3.0587 7.7461 19 7 5.6621 -1.8416 7.8116 20 14 5.5852 -4.2858 9.0985 21 1 6.8330 -5.0151 8.7575 22 1 5.7690 -3.5644 10.3835 23 1 4.4664 -5.2534 9.2296 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7490 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7208 -1.2494 33 1 3.0970 0.9913 1.9651 34 1 3.9092 -0.1559 3.9763 35 1 1.0780 -2.5591 0.7402 36 1 0.8924 -4.2986 3.2289 37 1 2.3546 -4.8148 2.3331 38 1 2.0588 -4.4199 5.2026 39 1 3.5202 -4.9355 4.3080 40 1 6.2158 -1.5752 8.5622 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184590529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:16 Heat of formation + Delta-G solvation = -44.563412 kcal Electronic energy + Delta-G solvation = -20956.703867 eV Core-core repulsion = 17927.609163 eV Total energy + Delta-G solvation = -3029.094705 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.71787 -39.62357 -37.94678 -35.68329 -34.83164 -32.94745 -30.42252 -30.04701 -28.22058 -27.97975 -27.93764 -24.41202 -23.82871 -22.41322 -21.47863 -19.66847 -18.75800 -17.81529 -17.08179 -16.77038 -16.43248 -16.31749 -15.31661 -15.12757 -15.02947 -14.50575 -14.49175 -14.24699 -13.84491 -13.66881 -13.52374 -13.18772 -12.91721 -12.89050 -12.87504 -12.71512 -12.54207 -12.49498 -12.45647 -12.08282 -12.06342 -11.78789 -11.52375 -11.26209 -11.05131 -10.64893 -9.97234 -9.61313 -8.43418 -8.36533 -7.00237 0.53091 0.58330 1.35795 1.38067 1.53930 2.15463 2.30827 2.58560 2.90877 3.49367 3.62294 3.79249 3.86779 4.09923 4.21912 4.24099 4.34703 4.35267 4.55518 4.61132 4.71811 4.78921 4.88164 4.88889 4.98886 5.02775 5.09745 5.11614 5.12639 5.15533 5.17737 5.19601 5.28643 5.42381 5.47494 5.56509 5.64517 5.76561 5.85212 5.90673 6.14997 6.45912 6.70769 7.18639 8.23450 8.50648 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.035727 B = 0.004379 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.536558 B = 6393.006056 C = 6974.755299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.019 4.019 3 C -0.145 4.145 4 C -0.134 4.134 5 C -0.113 4.113 6 C -0.094 4.094 7 C -0.182 4.182 8 C 0.135 3.865 9 C -0.163 4.163 10 C -0.064 4.064 11 C -0.069 4.069 12 C 0.105 3.895 13 N -0.583 5.583 14 C 0.530 3.470 15 O -0.609 6.609 16 C -0.557 4.557 17 H 0.095 0.905 18 C 0.027 3.973 19 N -0.815 5.815 20 Si 1.005 2.995 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.244 1.244 24 H 0.043 0.957 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.132 0.868 34 H 0.089 0.911 35 H 0.153 0.847 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.374 -3.279 -15.045 18.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.019 4.019 3 C -0.202 4.202 4 C -0.191 4.191 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.204 4.204 8 C 0.036 3.964 9 C -0.167 4.167 10 C -0.082 4.082 11 C -0.106 4.106 12 C -0.017 4.017 13 N -0.305 5.305 14 C 0.339 3.661 15 O -0.495 6.495 16 C -0.592 4.592 17 H 0.113 0.887 18 C -0.189 4.189 19 N -0.443 5.443 20 Si 0.823 3.177 21 H -0.183 1.183 22 H -0.196 1.196 23 H -0.167 1.167 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.150 0.850 34 H 0.108 0.892 35 H 0.170 0.830 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.951 -2.600 -14.739 17.972 hybrid contribution 0.854 0.115 1.307 1.566 sum -9.097 -2.485 -13.431 16.411 Atomic orbital electron populations 1.21870 0.92804 1.02510 1.01952 1.19423 0.96243 0.94719 0.91523 1.21963 1.00835 0.95150 1.02253 1.21872 1.00574 1.00633 0.96061 1.19843 0.99941 0.94293 0.97366 1.20983 0.97561 1.00040 0.92682 1.20924 1.05232 0.93963 1.00271 1.19055 0.95709 0.92231 0.89402 1.20411 1.02359 0.97368 0.96528 1.20366 0.98975 0.93647 0.95186 1.21116 1.02010 0.92617 0.94824 1.22088 0.97262 0.83652 0.98709 1.46354 1.50429 1.12674 1.21048 1.18785 0.77630 0.88412 0.81227 1.90550 1.56626 1.23450 1.78862 1.21414 1.33573 0.98805 1.05402 0.88663 1.27128 0.92909 0.97664 1.01236 1.70163 1.24684 1.20154 1.29347 0.84911 0.79970 0.77481 0.75333 1.18324 1.19559 1.16743 0.93740 0.90704 0.91812 0.93116 0.90551 0.93131 0.91808 0.90711 0.93736 0.84977 0.89245 0.82967 0.87273 0.87258 0.90686 0.90660 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.29 71.98 0.60 -1.76 16 2 C -0.02 -0.40 0.85 -52.93 -0.05 -0.45 16 3 C -0.14 -2.93 7.13 71.98 0.51 -2.42 16 4 C -0.13 -2.36 8.29 71.98 0.60 -1.76 16 5 C -0.11 -3.32 4.76 -19.83 -0.09 -3.41 16 6 C -0.09 -3.47 8.96 22.19 0.20 -3.27 16 7 C -0.18 -8.69 9.46 22.54 0.21 -8.48 16 8 C 0.13 6.28 6.62 38.42 0.25 6.53 16 9 C -0.16 -5.70 6.23 -19.61 -0.12 -5.83 16 10 C -0.06 -1.82 8.71 22.25 0.19 -1.63 16 11 C -0.07 -1.93 6.94 30.26 0.21 -1.72 16 12 C 0.10 3.89 6.20 86.63 0.54 4.42 16 13 N -0.58 -29.44 3.12 -634.50 -1.98 -31.42 16 14 C 0.53 32.55 7.72 86.30 0.67 33.21 16 15 O -0.61 -42.49 13.16 -4.47 -0.06 -42.55 16 16 C -0.56 -31.96 9.04 24.79 0.22 -31.73 16 17 H 0.10 4.83 7.11 -2.91 -0.02 4.81 16 18 C 0.03 1.49 5.50 85.33 0.47 1.96 16 19 N -0.81 -50.17 11.82 21.85 0.26 -49.91 16 20 Si 1.01 40.42 29.56 68.60 2.03 42.45 16 21 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 22 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 23 H -0.24 -9.02 7.11 99.48 0.71 -8.31 16 24 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.02 7.39 -2.38 -0.02 1.01 16 27 H 0.05 1.10 7.50 -2.39 -0.02 1.08 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.10 7.53 -2.39 -0.02 1.08 16 30 H 0.06 1.02 7.39 -2.38 -0.02 1.01 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.13 4.33 5.90 -2.91 -0.02 4.32 16 34 H 0.09 5.08 6.26 -2.91 -0.02 5.06 16 35 H 0.15 3.15 7.11 -2.91 -0.02 3.13 16 36 H 0.11 2.42 8.14 -2.38 -0.02 2.40 16 37 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.28 15.44 8.29 -92.71 -0.77 14.67 16 Total: -1.00 -79.64 321.45 5.69 -73.95 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 1.03 Total: 23.79 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 4.41 Total: -16.32 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -1.72 Total: -81.33 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -0.06 Total: -42.55 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -79.64 5.69 -73.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184590529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.387 kcal (2) G-P(sol) polarization free energy of solvation -79.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds