Wall clock time and date at job start Mon Mar 30 2020 01:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47024 * 2 1 4 4 C 1.50696 * 109.46788 * 119.99607 * 2 1 3 5 5 C 1.38255 * 120.03958 * 299.98119 * 4 2 1 6 6 C 1.38686 * 120.00440 * 180.02562 * 5 4 2 7 7 C 1.38501 * 120.05443 * 359.93164 * 6 5 4 8 8 C 1.38442 * 119.81399 * 0.08078 * 7 6 5 9 9 C 1.38116 * 120.03205 * 120.00032 * 4 2 1 10 10 C 1.51366 * 109.63104 * 179.97438 * 8 7 6 11 11 H 1.08997 * 110.31061 * 136.21046 * 10 8 7 12 12 N 1.46508 * 110.30139 * 258.26246 * 10 8 7 13 13 C 1.34770 * 120.00128 * 203.62233 * 12 10 8 14 14 O 1.21693 * 120.00233 * 0.02562 * 13 12 10 15 15 C 1.46377 * 120.00195 * 179.97438 * 13 12 10 16 16 H 1.08003 * 119.99382 * 6.25483 * 15 13 12 17 17 C 1.40045 * 119.99996 * 186.24760 * 15 13 12 18 18 N 1.30678 * 119.99940 * 184.67776 * 17 15 13 19 19 Si 1.86798 * 120.00594 * 4.67792 * 17 15 13 20 20 H 1.48497 * 109.47673 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47084 * 59.99720 * 19 17 15 22 22 H 1.48511 * 109.46705 * 300.00253 * 19 17 15 23 23 C 1.54349 * 105.25639 * 17.23090 * 10 8 7 24 24 C 1.51372 * 130.38987 * 180.12307 * 7 6 5 25 25 H 1.09004 * 109.46993 * 60.00199 * 1 2 3 26 26 H 1.09004 * 109.46886 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47227 * 300.00610 * 1 2 3 28 28 H 1.08994 * 109.46724 * 239.99925 * 2 1 3 29 29 H 1.08998 * 109.47246 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47073 * 299.99752 * 3 2 1 31 31 H 1.09001 * 109.47120 * 59.99535 * 3 2 1 32 32 H 1.07998 * 120.02375 * 0.05896 * 5 4 2 33 33 H 1.08006 * 120.05123 * 180.02562 * 6 5 4 34 34 H 1.07999 * 119.88437 * 0.02562 * 9 4 2 35 35 H 0.97002 * 120.00025 * 23.62298 * 12 10 8 36 36 H 0.97007 * 119.99648 * 354.89991 * 18 17 15 37 37 H 1.09000 * 110.81731 * 91.82950 * 23 10 8 38 38 H 1.08994 * 110.82180 * 215.18364 * 23 10 8 39 39 H 1.08999 * 110.30881 * 43.87533 * 24 7 6 40 40 H 1.09006 * 110.30251 * 281.71805 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6991 -0.2384 2.4866 6 6 2.1621 -0.8923 3.6185 7 6 2.9573 -2.0192 3.4920 8 6 3.2896 -2.4894 2.2330 9 6 2.8264 -1.8334 1.1047 10 6 4.1595 -3.7212 2.3634 11 1 3.8359 -4.4890 1.6607 12 7 5.5645 -3.3784 2.1289 13 6 6.4318 -4.3283 1.7264 14 8 6.0478 -5.4706 1.5572 15 6 7.8354 -3.9857 1.4916 16 1 8.1985 -2.9986 1.7368 17 6 8.7073 -4.9380 0.9492 18 7 9.9788 -4.6636 0.8244 19 14 8.0528 -6.6005 0.4040 20 1 9.1693 -7.4211 -0.1301 21 1 7.0297 -6.4067 -0.6547 22 1 7.4392 -7.2955 1.5641 23 6 3.9618 -4.2062 3.8153 24 6 3.5802 -2.9040 4.5505 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.0777 0.6393 2.5867 33 1 1.9019 -0.5245 4.6001 34 1 3.0868 -2.2010 0.1231 35 1 5.8706 -2.4678 2.2634 36 1 10.3066 -3.7759 1.0379 37 1 3.1532 -4.9349 3.8736 38 1 4.8866 -4.6233 4.2138 39 1 2.8594 -3.1129 5.3411 40 1 4.4700 -2.4295 4.9645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187242100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:00 Heat of formation + Delta-G solvation = -51.711737 kcal Electronic energy + Delta-G solvation = -20699.258147 eV Core-core repulsion = 17669.853468 eV Total energy + Delta-G solvation = -3029.404679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.28629 -38.02868 -36.64567 -34.08905 -32.85549 -32.13470 -30.74899 -28.19937 -27.29525 -27.06892 -25.33230 -22.64074 -22.23041 -20.83695 -19.62442 -19.12181 -17.97146 -16.24654 -15.94998 -15.41829 -15.32849 -14.63202 -14.17009 -13.98487 -13.67616 -13.61716 -13.41150 -13.09759 -12.81392 -12.57094 -12.49410 -12.18892 -12.12320 -12.01408 -11.50406 -11.27531 -11.12181 -10.99259 -10.81388 -10.64447 -10.48014 -10.34917 -10.17953 -9.20570 -8.96190 -8.75520 -8.37211 -7.94169 -7.86257 -6.96949 -4.91457 1.39241 1.46844 3.59672 3.68926 3.75625 4.10319 4.33948 4.41577 4.53244 4.66273 4.76520 4.78257 4.86871 5.06229 5.09336 5.21644 5.35058 5.40281 5.44408 5.44929 5.53237 5.61175 5.65173 5.67036 5.76422 5.86268 5.98638 6.01637 6.08461 6.10032 6.19573 6.27478 6.36225 6.40255 6.58944 6.68202 6.82348 7.08475 7.51441 7.71331 7.77394 8.12370 8.85352 9.09202 10.07510 10.34692 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022040 B = 0.004675 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.113244 B = 5988.419088 C = 6569.221695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.084 4.084 5 C -0.113 4.113 6 C -0.113 4.113 7 C -0.089 4.089 8 C -0.097 4.097 9 C -0.089 4.089 10 C 0.190 3.810 11 H 0.088 0.912 12 N -0.743 5.743 13 C 0.553 3.447 14 O -0.617 6.617 15 C -0.597 4.597 16 H 0.069 0.931 17 C 0.060 3.940 18 N -0.834 5.834 19 Si 1.131 2.869 20 H -0.323 1.323 21 H -0.292 1.292 22 H -0.280 1.280 23 C -0.130 4.130 24 C -0.081 4.081 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.387 0.613 36 H 0.277 0.723 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.421 10.967 2.875 20.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 C -0.201 4.201 4 C -0.084 4.084 5 C -0.131 4.131 6 C -0.131 4.131 7 C -0.090 4.090 8 C -0.098 4.098 9 C -0.107 4.107 10 C 0.084 3.916 11 H 0.105 0.895 12 N -0.393 5.393 13 C 0.362 3.638 14 O -0.511 6.511 15 C -0.634 4.634 16 H 0.087 0.913 17 C -0.157 4.157 18 N -0.462 5.462 19 Si 0.964 3.036 20 H -0.255 1.255 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.169 4.169 24 C -0.118 4.118 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.219 0.781 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.185 8.816 2.190 19.438 hybrid contribution -0.270 2.339 0.807 2.489 sum -17.455 11.155 2.997 20.931 Atomic orbital electron populations 1.21851 0.94494 1.01979 1.01652 1.20096 0.95760 0.95995 0.95566 1.21851 1.01475 0.95099 1.01625 1.19674 0.98373 0.95722 0.94593 1.20909 1.00652 0.99822 0.91740 1.20689 0.98662 0.95388 0.98334 1.20743 0.97136 0.95485 0.95628 1.20847 0.98068 0.97606 0.93254 1.20597 0.97120 0.94841 0.98152 1.19972 0.82537 0.92865 0.96266 0.89451 1.45797 1.06579 1.12550 1.74349 1.18469 0.86476 0.83372 0.75519 1.90143 1.79031 1.20851 1.61031 1.22042 0.92986 1.02229 1.46116 0.91288 1.27163 0.92549 1.05870 0.90102 1.70659 1.14028 1.23566 1.37925 0.82364 0.71405 0.72463 0.77362 1.25509 1.21925 1.20760 1.22708 1.02283 0.96065 0.95804 1.21069 0.99746 0.94718 0.96229 0.92541 0.92529 0.92580 0.90440 0.92395 0.92526 0.92592 0.86322 0.86488 0.86267 0.78088 0.91246 0.91032 0.89859 0.91090 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.01 37.16 0.33 -0.89 16 2 C -0.06 -0.56 3.09 -91.77 -0.28 -0.85 16 3 C -0.14 -1.30 9.01 37.16 0.33 -0.97 16 4 C -0.08 -1.04 4.78 -104.66 -0.50 -1.54 16 5 C -0.11 -1.31 8.74 -39.41 -0.34 -1.65 16 6 C -0.11 -1.38 10.07 -39.32 -0.40 -1.78 16 7 C -0.09 -1.27 6.14 -104.12 -0.64 -1.91 16 8 C -0.10 -1.55 5.65 -104.13 -0.59 -2.13 16 9 C -0.09 -1.31 9.67 -39.53 -0.38 -1.69 16 10 C 0.19 3.53 3.18 -68.04 -0.22 3.31 16 11 H 0.09 1.79 7.60 -51.93 -0.39 1.40 16 12 N -0.74 -16.02 5.10 -55.33 -0.28 -16.30 16 13 C 0.55 14.72 7.57 -12.99 -0.10 14.62 16 14 O -0.62 -17.69 11.74 5.19 0.06 -17.63 16 15 C -0.60 -17.01 9.96 -35.63 -0.36 -17.36 16 16 H 0.07 1.95 8.05 -52.48 -0.42 1.52 16 17 C 0.06 1.76 5.52 -17.37 -0.10 1.66 16 18 N -0.83 -24.34 13.64 55.55 0.76 -23.58 16 19 Si 1.13 30.17 25.99 -169.99 -4.42 25.75 16 20 H -0.32 -8.30 7.11 56.52 0.40 -7.90 16 21 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 22 H -0.28 -7.68 6.78 56.52 0.38 -7.29 16 23 C -0.13 -2.12 6.78 -25.33 -0.17 -2.29 16 24 C -0.08 -1.10 6.77 -26.85 -0.18 -1.28 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.45 7.39 -51.93 -0.38 0.07 16 28 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.47 7.39 -51.93 -0.38 0.09 16 32 H 0.12 1.11 7.11 -52.49 -0.37 0.74 16 33 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.12 1.75 7.94 -52.49 -0.42 1.34 16 35 H 0.39 7.81 8.59 -40.82 -0.35 7.46 16 36 H 0.28 7.76 8.72 -40.82 -0.36 7.41 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 1.52 8.08 -51.93 -0.42 1.10 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 327.21 15.07 4.93 4.93 Total: -1.00 -31.32 327.21 -8.64 -39.96 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.11 Total: 1.61 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -3.58 Total: -14.75 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.48 Total: -39.88 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.06 Total: -17.63 kcal Atomic # 14 Polarization: 30.17 SS G_CDS: -4.42 Total: 25.75 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.32 -8.64 -39.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187242100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.749 kcal (2) G-P(sol) polarization free energy of solvation -31.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds