Wall clock time and date at job start Mon Mar 30 2020 01:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32558 * 120.00405 * 2 1 4 4 C 1.47818 * 119.99921 * 7.65682 * 3 2 1 5 5 C 1.39535 * 120.13948 * 213.18612 * 4 3 2 6 6 C 1.37974 * 119.85026 * 179.71435 * 5 4 3 7 7 C 1.38343 * 120.14551 * 0.54127 * 6 5 4 8 8 C 1.38346 * 120.28433 * 359.75800 * 7 6 5 9 9 C 1.37978 * 120.13988 * 359.95502 * 8 7 6 10 10 C 1.50704 * 119.99770 * 179.97438 * 2 1 3 11 11 N 1.46903 * 109.47606 * 275.00357 * 10 2 1 12 12 C 1.47957 * 110.99932 * 190.00211 * 11 10 2 13 13 C 1.53944 * 86.17688 * 222.41221 * 12 11 10 14 14 O 1.42895 * 113.73584 * 269.25561 * 13 12 11 15 15 C 1.50704 * 113.72744 * 138.07628 * 13 12 11 16 16 H 1.07997 * 120.00288 * 1.90467 * 15 13 12 17 17 C 1.37879 * 119.99336 * 181.89834 * 15 13 12 18 18 N 1.31509 * 120.00159 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99787 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47326 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47157 * 300.00456 * 19 17 15 22 22 H 1.48500 * 109.47049 * 60.00181 * 19 17 15 23 23 C 1.48184 * 111.07243 * 90.56286 * 11 10 2 24 24 H 1.09001 * 109.47007 * 266.56868 * 1 2 3 25 25 H 1.08994 * 109.46778 * 26.57121 * 1 2 3 26 26 H 1.08998 * 109.46805 * 146.56934 * 1 2 3 27 27 H 1.08001 * 120.00519 * 187.65278 * 3 2 1 28 28 H 1.07992 * 120.07384 * 359.97438 * 5 4 3 29 29 H 1.08000 * 119.92816 * 180.27374 * 6 5 4 30 30 H 1.07996 * 119.85779 * 179.74212 * 7 6 5 31 31 H 1.08002 * 119.92882 * 179.97438 * 8 7 6 32 32 H 1.08006 * 120.06610 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.47201 * 155.00062 * 10 2 1 34 34 H 1.09006 * 109.47028 * 35.00456 * 10 2 1 35 35 H 1.09005 * 113.75670 * 108.10172 * 12 11 10 36 36 H 1.08997 * 113.86077 * 336.74483 * 12 11 10 37 37 H 0.96695 * 113.99775 * 178.09726 * 14 13 12 38 38 H 0.97004 * 120.00255 * 179.97438 * 18 17 15 39 39 H 1.09009 * 113.75902 * 23.24361 * 23 11 10 40 40 H 1.08995 * 113.83122 * 251.81678 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1699 1.1479 0.0000 4 6 1.4408 2.4224 0.1706 5 6 1.8897 3.5776 -0.4705 6 6 1.2012 4.7627 -0.3118 7 6 0.0745 4.8097 0.4896 8 6 -0.3721 3.6693 1.1329 9 6 0.3040 2.4766 0.9778 10 6 2.2605 -1.3052 0.0006 11 7 2.4008 -1.7891 1.3805 12 6 3.3338 -2.9354 1.4481 13 6 2.3197 -3.5713 2.4161 14 8 2.5647 -3.2633 3.7898 15 6 2.0912 -5.0414 2.1754 16 1 2.6427 -5.5539 1.4011 17 6 1.1781 -5.7318 2.9438 18 7 0.5062 -5.1076 3.8863 19 14 0.8952 -7.5541 2.6460 20 1 -0.1284 -8.0580 3.5964 21 1 0.4216 -7.7605 1.2538 22 1 2.1674 -8.2924 2.8506 23 6 1.2655 -2.6643 1.7562 24 1 -0.3633 -0.0615 1.0258 25 1 -0.3633 0.9191 -0.4597 26 1 -0.3633 -0.8576 -0.5662 27 1 3.2427 1.1521 -0.1245 28 1 2.7717 3.5433 -1.0927 29 1 1.5450 5.6566 -0.8110 30 1 -0.4585 5.7408 0.6138 31 1 -1.2521 3.7126 1.7575 32 1 -0.0460 1.5868 1.4802 33 1 3.2488 -1.1544 -0.4338 34 1 1.7131 -2.0410 -0.5886 35 1 4.2914 -2.6955 1.9105 36 1 3.4395 -3.4741 0.5064 37 1 1.9131 -3.6369 4.3988 38 1 -0.1365 -5.5932 4.4267 39 1 0.7634 -3.1225 0.9040 40 1 0.5734 -2.2083 2.4641 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190980669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:33 Heat of formation + Delta-G solvation = 26.668250 kcal Electronic energy + Delta-G solvation = -20464.402230 eV Core-core repulsion = 17438.396362 eV Total energy + Delta-G solvation = -3026.005868 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.46344 -38.87464 -35.81499 -33.91891 -32.08577 -31.11640 -30.66962 -28.23020 -27.06967 -25.60715 -25.02139 -22.67803 -22.35012 -21.31622 -18.61541 -18.33804 -17.16339 -16.48514 -15.52668 -15.28459 -15.08555 -14.94079 -14.28892 -14.11944 -13.97342 -13.59907 -13.36109 -12.93337 -12.71881 -12.24626 -12.11988 -12.00315 -11.63886 -11.48760 -11.43254 -11.18848 -10.96456 -10.93046 -10.63857 -10.46059 -10.20800 -10.00926 -9.59079 -9.27944 -8.88608 -8.65150 -8.27113 -7.88161 -7.79480 -6.26359 -4.36527 1.08497 1.43441 2.56264 3.20162 3.25817 3.28201 3.91038 4.25029 4.77756 4.89278 4.92225 4.96999 5.00709 5.11849 5.20512 5.36389 5.45658 5.59437 5.66989 5.83253 5.85004 5.89952 5.98948 6.02323 6.11516 6.14599 6.19542 6.32022 6.41280 6.44201 6.51755 6.54566 6.68396 6.84891 7.01768 7.04233 7.08136 7.23549 7.35726 7.75154 7.96995 8.01128 8.64998 9.33510 9.62313 10.79367 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.035394 B = 0.003606 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.915440 B = 7763.497567 C = 7973.909315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.075 4.075 3 C -0.140 4.140 4 C -0.038 4.038 5 C -0.116 4.116 6 C -0.125 4.125 7 C -0.130 4.130 8 C -0.123 4.123 9 C -0.114 4.114 10 C 0.051 3.949 11 N -0.472 5.472 12 C 0.008 3.992 13 C 0.244 3.756 14 O -0.571 6.571 15 C -0.540 4.540 16 H 0.064 0.936 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.902 3.098 20 H -0.285 1.285 21 H -0.276 1.276 22 H -0.274 1.274 23 C -0.009 4.009 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.117 0.883 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.388 0.612 38 H 0.271 0.729 39 H 0.059 0.941 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.418 13.949 -8.007 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.076 4.076 3 C -0.159 4.159 4 C -0.038 4.038 5 C -0.135 4.135 6 C -0.143 4.143 7 C -0.148 4.148 8 C -0.141 4.141 9 C -0.132 4.132 10 C -0.078 4.078 11 N -0.194 5.194 12 C -0.120 4.120 13 C 0.203 3.797 14 O -0.382 6.382 15 C -0.578 4.578 16 H 0.082 0.918 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.730 3.270 20 H -0.210 1.210 21 H -0.201 1.201 22 H -0.200 1.200 23 C -0.138 4.138 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.151 0.849 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.241 0.759 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.920 14.823 -7.750 16.752 hybrid contribution -0.872 -1.865 -0.534 2.127 sum -1.792 12.958 -8.284 15.484 Atomic orbital electron populations 1.21172 0.92677 1.02024 1.02170 1.21959 0.95400 0.94394 0.95797 1.21331 0.98661 0.90411 1.05478 1.19092 0.94807 0.93520 0.96395 1.21267 1.00062 0.92351 0.99774 1.21027 0.96096 0.97692 0.99440 1.21138 0.97191 0.98239 0.98221 1.21111 1.00167 0.92851 0.99944 1.21727 0.95039 0.98439 0.97995 1.21677 0.98713 0.93833 0.93528 1.68600 1.07391 1.25646 1.17770 1.24137 0.98060 0.90870 0.98969 1.19739 0.88330 0.91086 0.80548 1.86046 1.56430 1.78512 1.17247 1.21618 1.22924 0.94496 1.18746 0.91764 1.25048 0.94595 0.98993 0.94412 1.69419 1.26169 1.36836 1.21283 0.86488 0.78103 0.84289 0.78169 1.21015 1.20095 1.19961 1.24777 0.95292 0.94038 0.99726 0.90810 0.91431 0.92134 0.86517 0.86184 0.86414 0.86532 0.86200 0.84915 0.91268 0.93632 0.90662 0.91755 0.75852 0.91887 0.92280 0.91076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 8.19 36.01 0.29 -1.46 16 2 C -0.07 -1.16 5.55 -101.25 -0.56 -1.72 16 3 C -0.14 -2.03 9.42 -37.57 -0.35 -2.39 16 4 C -0.04 -0.52 5.21 -105.01 -0.55 -1.07 16 5 C -0.12 -1.39 9.79 -39.19 -0.38 -1.77 16 6 C -0.12 -1.33 10.03 -39.64 -0.40 -1.72 16 7 C -0.13 -1.38 10.04 -39.50 -0.40 -1.77 16 8 C -0.12 -1.42 10.03 -39.64 -0.40 -1.82 16 9 C -0.11 -1.52 7.59 -39.20 -0.30 -1.82 16 10 C 0.05 0.86 4.97 -4.97 -0.02 0.84 16 11 N -0.47 -9.79 6.14 -239.48 -1.47 -11.26 16 12 C 0.01 0.18 7.34 -2.76 -0.02 0.16 16 13 C 0.24 6.16 1.40 -90.83 -0.13 6.04 16 14 O -0.57 -15.49 13.48 -35.23 -0.48 -15.96 16 15 C -0.54 -14.32 8.61 -34.44 -0.30 -14.62 16 16 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 17 C 0.07 1.88 5.39 -17.82 -0.10 1.78 16 18 N -0.90 -23.91 11.20 55.43 0.62 -23.29 16 19 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 C -0.01 -0.21 7.36 -2.63 -0.02 -0.23 16 24 H 0.07 1.08 6.85 -51.93 -0.36 0.73 16 25 H 0.07 0.88 5.99 -51.93 -0.31 0.56 16 26 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 27 H 0.12 1.61 7.99 -52.49 -0.42 1.19 16 28 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 32 H 0.13 1.81 5.30 -52.48 -0.28 1.53 16 33 H 0.07 1.09 7.92 -51.93 -0.41 0.68 16 34 H 0.05 0.77 7.37 -51.93 -0.38 0.39 16 35 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 36 H 0.06 1.30 7.88 -51.93 -0.41 0.90 16 37 H 0.39 10.63 6.60 45.56 0.30 10.93 16 38 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.06 1.33 7.44 -51.92 -0.39 0.95 16 40 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 LS Contribution 328.70 15.07 4.95 4.95 Total: -1.00 -27.96 328.70 -10.17 -38.14 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -5.16 Total: 13.73 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -3.63 Total: -21.57 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: -0.85 Total: -34.54 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.48 Total: -15.96 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.96 -10.17 -38.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190980669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.808 kcal (2) G-P(sol) polarization free energy of solvation -27.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds