Wall clock time and date at job start Mon Mar 30 2020 01:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.32558 * 120.00405 * 2 1 4 4 C 1.47818 * 119.99921 * 7.65682 * 3 2 1 5 5 C 1.39535 * 120.13948 * 213.18612 * 4 3 2 6 6 C 1.37974 * 119.85026 * 179.71435 * 5 4 3 7 7 C 1.38343 * 120.14551 * 0.54127 * 6 5 4 8 8 C 1.38346 * 120.28433 * 359.75800 * 7 6 5 9 9 C 1.37978 * 120.13988 * 359.95502 * 8 7 6 10 10 C 1.50704 * 119.99770 * 179.97438 * 2 1 3 11 11 N 1.46903 * 109.47606 * 275.00357 * 10 2 1 12 12 C 1.47957 * 110.99932 * 190.00211 * 11 10 2 13 13 C 1.53944 * 86.17688 * 222.41221 * 12 11 10 14 14 O 1.42895 * 113.73584 * 269.25561 * 13 12 11 15 15 C 1.50704 * 113.72744 * 138.07628 * 13 12 11 16 16 H 1.07997 * 120.00288 * 1.90467 * 15 13 12 17 17 C 1.37879 * 119.99336 * 181.89834 * 15 13 12 18 18 N 1.31509 * 120.00159 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99787 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47326 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.47157 * 300.00456 * 19 17 15 22 22 H 1.48500 * 109.47049 * 60.00181 * 19 17 15 23 23 C 1.48184 * 111.07243 * 90.56286 * 11 10 2 24 24 H 1.09001 * 109.47007 * 266.56868 * 1 2 3 25 25 H 1.08994 * 109.46778 * 26.57121 * 1 2 3 26 26 H 1.08998 * 109.46805 * 146.56934 * 1 2 3 27 27 H 1.08001 * 120.00519 * 187.65278 * 3 2 1 28 28 H 1.07992 * 120.07384 * 359.97438 * 5 4 3 29 29 H 1.08000 * 119.92816 * 180.27374 * 6 5 4 30 30 H 1.07996 * 119.85779 * 179.74212 * 7 6 5 31 31 H 1.08002 * 119.92882 * 179.97438 * 8 7 6 32 32 H 1.08006 * 120.06610 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.47201 * 155.00062 * 10 2 1 34 34 H 1.09006 * 109.47028 * 35.00456 * 10 2 1 35 35 H 1.09005 * 113.75670 * 108.10172 * 12 11 10 36 36 H 1.08997 * 113.86077 * 336.74483 * 12 11 10 37 37 H 0.96695 * 113.99775 * 178.09726 * 14 13 12 38 38 H 0.97004 * 120.00255 * 179.97438 * 18 17 15 39 39 H 1.09009 * 113.75902 * 23.24361 * 23 11 10 40 40 H 1.08995 * 113.83122 * 251.81678 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1699 1.1479 0.0000 4 6 1.4408 2.4224 0.1706 5 6 1.8897 3.5776 -0.4705 6 6 1.2012 4.7627 -0.3118 7 6 0.0745 4.8097 0.4896 8 6 -0.3721 3.6693 1.1329 9 6 0.3040 2.4766 0.9778 10 6 2.2605 -1.3052 0.0006 11 7 2.4008 -1.7891 1.3805 12 6 3.3338 -2.9354 1.4481 13 6 2.3197 -3.5713 2.4161 14 8 2.5647 -3.2633 3.7898 15 6 2.0912 -5.0414 2.1754 16 1 2.6427 -5.5539 1.4011 17 6 1.1781 -5.7318 2.9438 18 7 0.5062 -5.1076 3.8863 19 14 0.8952 -7.5541 2.6460 20 1 -0.1284 -8.0580 3.5964 21 1 0.4216 -7.7605 1.2538 22 1 2.1674 -8.2924 2.8506 23 6 1.2655 -2.6643 1.7562 24 1 -0.3633 -0.0615 1.0258 25 1 -0.3633 0.9191 -0.4597 26 1 -0.3633 -0.8576 -0.5662 27 1 3.2427 1.1521 -0.1245 28 1 2.7717 3.5433 -1.0927 29 1 1.5450 5.6566 -0.8110 30 1 -0.4585 5.7408 0.6138 31 1 -1.2521 3.7126 1.7575 32 1 -0.0460 1.5868 1.4802 33 1 3.2488 -1.1544 -0.4338 34 1 1.7131 -2.0410 -0.5886 35 1 4.2914 -2.6955 1.9105 36 1 3.4395 -3.4741 0.5064 37 1 1.9131 -3.6369 4.3988 38 1 -0.1365 -5.5932 4.4267 39 1 0.7634 -3.1225 0.9040 40 1 0.5734 -2.2083 2.4641 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190980669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:32 Heat of formation + Delta-G solvation = 9.127689 kcal Electronic energy + Delta-G solvation = -20465.162846 eV Core-core repulsion = 17438.396362 eV Total energy + Delta-G solvation = -3026.766484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87817 -40.13316 -37.15047 -35.65496 -34.12458 -32.06662 -31.76322 -29.72626 -28.34153 -27.25223 -26.80308 -24.16849 -23.25268 -22.46571 -20.48790 -19.60200 -19.01410 -17.42398 -17.14150 -16.83798 -16.53443 -16.21506 -15.83842 -15.67970 -15.24198 -14.63308 -14.59969 -14.35765 -13.94550 -13.86681 -13.47923 -13.40598 -13.30949 -12.93946 -12.79130 -12.69349 -12.56782 -12.31161 -12.22109 -11.86725 -11.80807 -11.52406 -11.20459 -10.67294 -10.54396 -10.11996 -9.77637 -9.55759 -8.97603 -8.24064 -6.42437 0.10441 0.54523 1.42463 1.43775 1.47441 1.52019 2.37200 2.96620 2.99139 3.23760 3.70242 3.90623 4.05661 4.13116 4.14931 4.21486 4.24540 4.32928 4.36386 4.48068 4.57028 4.64767 4.68787 4.71228 4.78203 4.80882 4.90348 5.03381 5.12135 5.15373 5.22350 5.40717 5.44091 5.48892 5.60751 5.65048 5.74088 5.78053 5.98761 5.99411 6.16114 6.31946 6.62566 7.30532 7.50848 8.80348 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.035394 B = 0.003606 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.915440 B = 7763.497567 C = 7973.909315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.100 4.100 3 C -0.125 4.125 4 C -0.064 4.064 5 C -0.121 4.121 6 C -0.126 4.126 7 C -0.126 4.126 8 C -0.132 4.132 9 C -0.131 4.131 10 C 0.053 3.947 11 N -0.475 5.475 12 C 0.016 3.984 13 C 0.217 3.783 14 O -0.585 6.585 15 C -0.563 4.563 16 H 0.064 0.936 17 C 0.028 3.972 18 N -0.918 5.918 19 Si 0.966 3.034 20 H -0.281 1.281 21 H -0.269 1.269 22 H -0.273 1.273 23 C 0.006 3.994 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.058 0.942 27 H 0.123 0.877 28 H 0.136 0.864 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.136 0.864 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.381 0.619 38 H 0.273 0.727 39 H 0.058 0.942 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.411 15.249 -9.310 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.064 4.064 5 C -0.139 4.139 6 C -0.143 4.143 7 C -0.144 4.144 8 C -0.150 4.150 9 C -0.149 4.149 10 C -0.075 4.075 11 N -0.197 5.197 12 C -0.112 4.112 13 C 0.176 3.824 14 O -0.395 6.395 15 C -0.601 4.601 16 H 0.082 0.918 17 C -0.172 4.172 18 N -0.558 5.558 19 Si 0.791 3.209 20 H -0.206 1.206 21 H -0.194 1.194 22 H -0.198 1.198 23 C -0.123 4.123 24 H 0.079 0.921 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.140 0.860 28 H 0.154 0.846 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.154 0.846 32 H 0.138 0.862 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.234 0.766 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.905 16.136 -9.065 18.530 hybrid contribution -0.856 -2.116 -0.128 2.286 sum -1.761 14.020 -9.194 16.858 Atomic orbital electron populations 1.21078 0.92145 1.02458 1.01435 1.21881 0.95850 0.93909 0.98403 1.21530 0.99025 0.90764 1.03138 1.19160 0.95511 0.93773 0.97979 1.21520 1.00632 0.92182 0.99531 1.21410 0.95692 0.98214 0.99021 1.21534 0.97020 0.98878 0.96998 1.21369 1.00629 0.92638 1.00322 1.21750 0.95582 0.98915 0.98607 1.21681 0.99978 0.94570 0.91227 1.68512 1.05855 1.24667 1.20690 1.24078 0.97482 0.91015 0.98642 1.20142 0.90818 0.91367 0.80093 1.86029 1.56485 1.78629 1.18376 1.21894 1.23451 0.95525 1.19237 0.91760 1.25799 0.94236 1.03038 0.94133 1.69505 1.26342 1.38246 1.21708 0.85490 0.77926 0.79242 0.78254 1.20592 1.19414 1.19783 1.24468 0.94981 0.93829 0.99033 0.92096 0.90413 0.92265 0.85953 0.84649 0.83546 0.83735 0.84628 0.86206 0.89669 0.93599 0.90651 0.90208 0.76584 0.91709 0.92372 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.28 8.19 71.24 0.58 -2.70 16 2 C -0.10 -3.06 5.55 -17.60 -0.10 -3.16 16 3 C -0.13 -3.55 9.42 23.66 0.22 -3.33 16 4 C -0.06 -1.69 5.21 -20.12 -0.10 -1.79 16 5 C -0.12 -2.61 9.79 22.52 0.22 -2.39 16 6 C -0.13 -2.28 10.03 22.23 0.22 -2.05 16 7 C -0.13 -2.30 10.04 22.32 0.22 -2.08 16 8 C -0.13 -2.83 10.03 22.23 0.22 -2.61 16 9 C -0.13 -3.41 7.59 22.52 0.17 -3.24 16 10 C 0.05 1.79 4.97 85.56 0.43 2.21 16 11 N -0.47 -19.75 6.14 -914.80 -5.62 -25.37 16 12 C 0.02 0.71 7.34 86.41 0.63 1.34 16 13 C 0.22 11.09 1.40 -10.89 -0.02 11.08 16 14 O -0.58 -32.52 13.48 -148.98 -2.01 -34.53 16 15 C -0.56 -30.12 8.61 25.60 0.22 -29.90 16 16 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 17 C 0.03 1.47 5.39 84.66 0.46 1.93 16 18 N -0.92 -49.58 11.20 21.45 0.24 -49.34 16 19 Si 0.97 41.48 29.54 68.60 2.03 43.51 16 20 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 C 0.01 0.29 7.36 86.37 0.64 0.93 16 24 H 0.06 1.86 6.85 -2.39 -0.02 1.85 16 25 H 0.08 2.01 5.99 -2.39 -0.01 2.00 16 26 H 0.06 1.65 8.12 -2.39 -0.02 1.63 16 27 H 0.12 3.23 7.99 -2.91 -0.02 3.21 16 28 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 29 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 30 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.12 3.37 5.30 -2.91 -0.02 3.35 16 33 H 0.08 2.56 7.92 -2.39 -0.02 2.54 16 34 H 0.05 1.54 7.37 -2.38 -0.02 1.52 16 35 H 0.08 3.24 8.14 -2.38 -0.02 3.22 16 36 H 0.08 3.17 7.88 -2.39 -0.02 3.15 16 37 H 0.38 21.64 6.60 -74.06 -0.49 21.15 16 38 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 39 H 0.06 2.68 7.44 -2.38 -0.02 2.66 16 40 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -59.49 328.70 -0.79 -60.29 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: 0.54 Total: 41.20 kcal Atomic # 6 Polarization: -39.78 SS G_CDS: 4.02 Total: -35.75 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -5.38 Total: -74.71 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -2.01 Total: -34.53 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -59.49 -0.79 -60.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190980669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.416 kcal (2) G-P(sol) polarization free energy of solvation -59.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds