Wall clock time and date at job start Mon Mar 30 2020 01:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53005 * 109.46934 * 2 1 4 4 C 1.52999 * 109.46936 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47166 * 179.97438 * 4 3 2 6 6 N 1.46493 * 109.47325 * 179.97438 * 5 4 3 7 7 C 1.39532 * 123.88226 * 270.00417 * 6 5 4 8 8 C 1.39373 * 130.81845 * 359.97438 * 7 6 5 9 9 C 1.37939 * 120.12738 * 179.97438 * 8 7 6 10 10 C 1.38301 * 120.37681 * 359.97438 * 9 8 7 11 11 C 1.38393 * 119.82794 * 0.02562 * 10 9 8 12 12 C 1.37682 * 119.91336 * 359.97438 * 11 10 9 13 13 C 1.51141 * 132.85240 * 180.02562 * 12 11 10 14 14 H 1.09003 * 110.50321 * 298.59194 * 13 12 11 15 15 C 1.50697 * 110.51112 * 61.30263 * 13 12 11 16 16 H 1.07996 * 120.00152 * 356.09725 * 15 13 12 17 17 C 1.37875 * 119.99885 * 176.10295 * 15 13 12 18 18 N 1.31521 * 119.99746 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00191 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46840 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47603 * 119.99965 * 19 17 15 22 22 H 1.48497 * 109.47074 * 240.00118 * 19 17 15 23 23 C 1.34371 * 123.87447 * 89.97417 * 6 5 4 24 24 O 1.21283 * 126.44611 * 0.02632 * 23 6 5 25 25 H 1.08999 * 109.46841 * 59.99949 * 1 2 3 26 26 H 1.08997 * 109.46792 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46903 * 300.00192 * 1 2 3 28 28 H 1.08997 * 109.46903 * 239.99808 * 2 1 3 29 29 H 1.08994 * 109.46934 * 119.99571 * 2 1 3 30 30 H 1.08998 * 109.47294 * 59.99643 * 3 2 1 31 31 H 1.09007 * 109.46605 * 299.99502 * 3 2 1 32 32 H 1.09002 * 109.46910 * 59.99263 * 4 3 2 33 33 H 1.08999 * 109.46743 * 299.99992 * 4 3 2 34 34 H 1.08998 * 109.46872 * 59.99641 * 5 4 3 35 35 H 1.09000 * 109.46872 * 300.00045 * 5 4 3 36 36 H 1.07996 * 119.93332 * 0.02562 * 8 7 6 37 37 H 1.07996 * 119.80724 * 179.97438 * 9 8 7 38 38 H 1.08000 * 120.08595 * 180.02562 * 10 9 8 39 39 H 1.07996 * 120.04590 * 180.02562 * 11 10 9 40 40 H 0.97001 * 119.99788 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8850 -0.0013 6 7 5.5450 2.8851 -0.0013 7 6 6.3229 2.8855 1.1571 8 6 5.9551 2.8865 2.5014 9 6 6.9232 2.8862 3.4840 10 6 8.2640 2.8845 3.1449 11 6 8.6369 2.8835 1.8121 12 6 7.6726 2.8838 0.8293 13 6 7.7436 2.8825 -0.6804 14 1 8.2506 3.7781 -1.0396 15 6 8.4440 1.6432 -1.1750 16 1 8.8663 0.9435 -0.4690 17 6 8.5459 1.4028 -2.5288 18 7 8.0313 2.2548 -3.3885 19 14 9.4135 -0.1336 -3.1420 20 1 9.9000 -0.9234 -1.9823 21 1 8.4649 -0.9539 -3.9372 22 1 10.5661 0.2553 -3.9937 23 6 6.2939 2.8841 -1.1169 24 8 5.8855 2.8835 -2.2589 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 3.7170 3.3991 0.8887 35 1 3.7163 3.3986 -0.8913 36 1 4.9102 2.8866 2.7743 37 1 6.6324 2.8874 4.5241 38 1 9.0180 2.8839 3.9180 39 1 9.6828 2.8817 1.5433 40 1 8.1033 2.0859 -4.3409 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218748405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:20 Heat of formation + Delta-G solvation = -15.002797 kcal Electronic energy + Delta-G solvation = -21047.479513 eV Core-core repulsion = 18019.666653 eV Total energy + Delta-G solvation = -3027.812860 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50708 -37.37574 -36.14270 -34.59766 -33.48722 -31.91076 -30.59456 -28.90931 -27.39992 -26.06329 -23.87056 -22.22216 -21.35470 -20.92285 -20.61213 -19.17905 -16.87136 -16.04002 -15.83858 -15.49278 -15.01298 -14.68326 -14.42018 -13.89672 -13.82347 -13.39687 -13.19253 -13.09979 -12.52218 -12.41890 -12.05417 -12.03970 -11.85596 -11.70339 -11.28989 -11.08773 -10.90974 -10.90585 -10.81642 -10.72406 -10.42610 -10.37627 -9.74974 -9.59248 -9.50490 -8.63564 -8.37218 -8.12992 -7.05068 -6.01691 -4.14293 1.96007 2.02864 3.27889 3.36125 3.39711 3.63571 3.88018 4.40801 4.51791 4.87468 4.93975 5.10133 5.14376 5.23509 5.32979 5.49656 5.50636 5.52740 5.58978 5.64571 5.76734 5.85082 5.93251 5.94670 5.97089 6.04690 6.07027 6.16937 6.25567 6.33137 6.42995 6.53342 6.56402 6.84621 7.02631 7.15386 7.28244 7.43220 7.65692 7.81838 8.01821 8.15701 8.82956 9.42307 9.48294 10.99940 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.007079 C = 0.005086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.502065 B = 3954.153749 C = 5504.487021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.136 4.136 5 C 0.113 3.887 6 N -0.569 5.569 7 C 0.151 3.849 8 C -0.158 4.158 9 C -0.106 4.106 10 C -0.159 4.159 11 C -0.071 4.071 12 C -0.104 4.104 13 C 0.059 3.941 14 H 0.072 0.928 15 C -0.524 4.524 16 H 0.068 0.932 17 C 0.067 3.933 18 N -0.837 5.837 19 Si 0.895 3.105 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.281 1.281 23 C 0.523 3.477 24 O -0.467 6.467 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.390 -0.005 10.884 13.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.175 4.175 5 C -0.010 4.010 6 N -0.293 5.293 7 C 0.054 3.946 8 C -0.180 4.180 9 C -0.124 4.124 10 C -0.178 4.178 11 C -0.090 4.090 12 C -0.106 4.106 13 C 0.039 3.961 14 H 0.090 0.910 15 C -0.562 4.562 16 H 0.086 0.914 17 C -0.141 4.141 18 N -0.470 5.470 19 Si 0.722 3.278 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.207 1.207 23 C 0.313 3.687 24 O -0.336 6.336 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.140 0.860 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.782 0.060 9.845 13.193 hybrid contribution 0.201 -0.947 -0.336 1.024 sum -8.581 -0.887 9.510 12.840 Atomic orbital electron populations 1.21774 0.96118 1.01327 1.01629 1.21527 0.95485 0.97098 1.02186 1.21532 0.95116 0.96773 1.01844 1.21975 0.95007 0.97397 1.03073 1.21429 0.80216 0.96899 1.02443 1.46590 1.05374 1.71053 1.06329 1.18285 0.91208 0.97801 0.87305 1.20163 0.99134 1.08896 0.89808 1.20584 0.92779 1.01187 0.97879 1.20877 0.95684 1.05531 0.95703 1.20272 0.99000 0.98426 0.91259 1.20516 0.91762 1.00671 0.97700 1.18369 0.90942 1.00764 0.86071 0.91033 1.20577 1.37474 1.06429 0.91686 0.91377 1.25122 0.95122 0.96880 0.96978 1.70145 1.40172 1.34584 1.02068 0.86480 0.79321 0.83017 0.78971 1.19520 1.20963 1.20700 1.22115 0.89649 0.73546 0.83345 1.90673 1.78302 1.46115 1.18510 0.92807 0.92998 0.92916 0.91931 0.92102 0.92147 0.91911 0.91219 0.91794 0.91156 0.90223 0.87122 0.86670 0.86641 0.85992 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 37.16 0.37 -1.07 16 2 C -0.13 -1.43 5.93 -26.72 -0.16 -1.59 16 3 C -0.11 -1.40 5.21 -26.73 -0.14 -1.54 16 4 C -0.14 -2.13 5.54 -26.73 -0.15 -2.28 16 5 C 0.11 1.91 5.73 -4.05 -0.02 1.89 16 6 N -0.57 -12.02 2.73 -113.26 -0.31 -12.33 16 7 C 0.15 3.02 6.69 -83.69 -0.56 2.46 16 8 C -0.16 -2.59 9.74 -39.27 -0.38 -2.97 16 9 C -0.11 -1.55 10.02 -39.67 -0.40 -1.95 16 10 C -0.16 -2.44 10.07 -39.50 -0.40 -2.83 16 11 C -0.07 -1.30 10.04 -39.73 -0.40 -1.70 16 12 C -0.10 -2.23 5.63 -104.36 -0.59 -2.82 16 13 C 0.06 1.52 2.93 -93.52 -0.27 1.25 16 14 H 0.07 1.94 8.14 -51.93 -0.42 1.51 16 15 C -0.52 -14.43 8.61 -34.44 -0.30 -14.73 16 16 H 0.07 1.85 7.77 -52.49 -0.41 1.44 16 17 C 0.07 1.88 5.31 -17.82 -0.09 1.79 16 18 N -0.84 -24.82 10.89 55.43 0.60 -24.22 16 19 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.52 13.46 7.36 -10.82 -0.08 13.38 16 24 O -0.47 -13.50 15.29 5.55 0.08 -13.42 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.99 7.61 -51.93 -0.40 0.60 16 35 H 0.08 1.39 7.95 -51.93 -0.41 0.98 16 36 H 0.11 1.54 7.70 -52.49 -0.40 1.14 16 37 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 333.42 15.07 5.02 5.02 Total: -1.00 -31.23 333.42 -9.44 -40.67 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.25 Total: 0.53 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: -3.57 Total: -12.72 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.29 Total: -36.54 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.08 Total: -13.42 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.23 -9.44 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218748405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.663 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds