Wall clock time and date at job start Mon Mar 30 2020 01:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53005 * 109.46934 * 2 1 4 4 C 1.52999 * 109.46936 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47166 * 179.97438 * 4 3 2 6 6 N 1.46493 * 109.47325 * 179.97438 * 5 4 3 7 7 C 1.39532 * 123.88226 * 270.00417 * 6 5 4 8 8 C 1.39373 * 130.81845 * 359.97438 * 7 6 5 9 9 C 1.37939 * 120.12738 * 179.97438 * 8 7 6 10 10 C 1.38301 * 120.37681 * 359.97438 * 9 8 7 11 11 C 1.38393 * 119.82794 * 0.02562 * 10 9 8 12 12 C 1.37682 * 119.91336 * 359.97438 * 11 10 9 13 13 C 1.51141 * 132.85240 * 180.02562 * 12 11 10 14 14 H 1.09003 * 110.50321 * 298.59194 * 13 12 11 15 15 C 1.50697 * 110.51112 * 61.30263 * 13 12 11 16 16 H 1.07996 * 120.00152 * 356.09725 * 15 13 12 17 17 C 1.37875 * 119.99885 * 176.10295 * 15 13 12 18 18 N 1.31521 * 119.99746 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00191 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46840 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47603 * 119.99965 * 19 17 15 22 22 H 1.48497 * 109.47074 * 240.00118 * 19 17 15 23 23 C 1.34371 * 123.87447 * 89.97417 * 6 5 4 24 24 O 1.21283 * 126.44611 * 0.02632 * 23 6 5 25 25 H 1.08999 * 109.46841 * 59.99949 * 1 2 3 26 26 H 1.08997 * 109.46792 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46903 * 300.00192 * 1 2 3 28 28 H 1.08997 * 109.46903 * 239.99808 * 2 1 3 29 29 H 1.08994 * 109.46934 * 119.99571 * 2 1 3 30 30 H 1.08998 * 109.47294 * 59.99643 * 3 2 1 31 31 H 1.09007 * 109.46605 * 299.99502 * 3 2 1 32 32 H 1.09002 * 109.46910 * 59.99263 * 4 3 2 33 33 H 1.08999 * 109.46743 * 299.99992 * 4 3 2 34 34 H 1.08998 * 109.46872 * 59.99641 * 5 4 3 35 35 H 1.09000 * 109.46872 * 300.00045 * 5 4 3 36 36 H 1.07996 * 119.93332 * 0.02562 * 8 7 6 37 37 H 1.07996 * 119.80724 * 179.97438 * 9 8 7 38 38 H 1.08000 * 120.08595 * 180.02562 * 10 9 8 39 39 H 1.07996 * 120.04590 * 180.02562 * 11 10 9 40 40 H 0.97001 * 119.99788 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8850 -0.0013 6 7 5.5450 2.8851 -0.0013 7 6 6.3229 2.8855 1.1571 8 6 5.9551 2.8865 2.5014 9 6 6.9232 2.8862 3.4840 10 6 8.2640 2.8845 3.1449 11 6 8.6369 2.8835 1.8121 12 6 7.6726 2.8838 0.8293 13 6 7.7436 2.8825 -0.6804 14 1 8.2506 3.7781 -1.0396 15 6 8.4440 1.6432 -1.1750 16 1 8.8663 0.9435 -0.4690 17 6 8.5459 1.4028 -2.5288 18 7 8.0313 2.2548 -3.3885 19 14 9.4135 -0.1336 -3.1420 20 1 9.9000 -0.9234 -1.9823 21 1 8.4649 -0.9539 -3.9372 22 1 10.5661 0.2553 -3.9937 23 6 6.2939 2.8841 -1.1169 24 8 5.8855 2.8835 -2.2589 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 3.7170 3.3991 0.8887 35 1 3.7163 3.3986 -0.8913 36 1 4.9102 2.8866 2.7743 37 1 6.6324 2.8874 4.5241 38 1 9.0180 2.8839 3.9180 39 1 9.6828 2.8817 1.5433 40 1 8.1033 2.0859 -4.3409 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218748405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:20 Heat of formation + Delta-G solvation = -31.700043 kcal Electronic energy + Delta-G solvation = -21048.203560 eV Core-core repulsion = 18019.666653 eV Total energy + Delta-G solvation = -3028.536907 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.14603 -38.98439 -37.44163 -36.13313 -35.33689 -33.52575 -31.93421 -30.30119 -29.09595 -27.43029 -25.63879 -23.47973 -22.82942 -22.13925 -21.94988 -20.81893 -18.76224 -17.69541 -17.47756 -16.75408 -16.53100 -16.40829 -16.17492 -15.19327 -15.04119 -14.62043 -14.52050 -14.46746 -14.20517 -14.11472 -13.80084 -13.52022 -13.02034 -12.92290 -12.85067 -12.75612 -12.51226 -12.18753 -11.99895 -11.91183 -11.90302 -11.73733 -11.45710 -11.30552 -11.00259 -10.73185 -10.36946 -9.55787 -8.59787 -8.14503 -6.35001 0.54266 0.65061 1.35133 1.36411 1.49238 1.96835 2.11162 2.38233 3.09256 3.11657 3.74120 3.79165 3.85649 4.07788 4.11997 4.23171 4.29691 4.36366 4.41741 4.44506 4.54148 4.64571 4.73372 4.78421 4.85312 4.90884 4.99332 5.02859 5.14834 5.15945 5.22581 5.28651 5.37571 5.42375 5.46003 5.62455 5.70532 5.82425 5.93913 6.07597 6.14031 6.44391 6.69910 7.30846 7.52593 8.86143 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.007079 C = 0.005086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.502065 B = 3954.153749 C = 5504.487021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C -0.106 4.106 4 C -0.126 4.126 5 C 0.109 3.891 6 N -0.566 5.566 7 C 0.124 3.876 8 C -0.145 4.145 9 C -0.091 4.091 10 C -0.143 4.143 11 C -0.085 4.085 12 C -0.139 4.139 13 C 0.047 3.953 14 H 0.036 0.964 15 C -0.534 4.534 16 H 0.066 0.934 17 C 0.013 3.987 18 N -0.875 5.875 19 Si 0.962 3.038 20 H -0.258 1.258 21 H -0.287 1.287 22 H -0.271 1.271 23 C 0.514 3.486 24 O -0.518 6.518 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.144 0.856 37 H 0.165 0.835 38 H 0.155 0.845 39 H 0.121 0.879 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.430 -0.751 15.109 17.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.144 4.144 4 C -0.164 4.164 5 C -0.012 4.012 6 N -0.290 5.290 7 C 0.028 3.972 8 C -0.166 4.166 9 C -0.109 4.109 10 C -0.161 4.161 11 C -0.103 4.103 12 C -0.142 4.142 13 C 0.026 3.974 14 H 0.053 0.947 15 C -0.572 4.572 16 H 0.084 0.916 17 C -0.191 4.191 18 N -0.509 5.509 19 Si 0.786 3.214 20 H -0.182 1.182 21 H -0.213 1.213 22 H -0.196 1.196 23 C 0.305 3.695 24 O -0.391 6.391 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.084 0.916 36 H 0.162 0.838 37 H 0.183 0.817 38 H 0.173 0.827 39 H 0.139 0.861 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.820 -0.684 14.149 17.237 hybrid contribution 0.556 -0.656 -1.451 1.686 sum -9.264 -1.340 12.699 15.776 Atomic orbital electron populations 1.21741 0.94335 1.02106 1.02276 1.21532 0.97029 0.96281 1.01591 1.21497 0.92170 0.97746 1.02998 1.21877 0.97546 0.95931 1.01089 1.21719 0.77684 0.98104 1.03709 1.46297 1.06961 1.70108 1.05614 1.18598 0.90182 1.00051 0.88354 1.20611 1.01500 1.06623 0.87869 1.21188 0.91838 0.98010 0.99829 1.21334 0.97412 1.02698 0.94705 1.20487 0.98524 0.98907 0.92392 1.20364 0.93924 1.04403 0.95498 1.18230 0.90917 0.98533 0.89752 0.94696 1.20865 1.37427 1.07010 0.91881 0.91565 1.26010 0.95853 1.00010 0.97277 1.70326 1.41922 1.36676 1.02004 0.85449 0.78212 0.79123 0.78630 1.18194 1.21326 1.19574 1.21947 0.90500 0.73346 0.83730 1.90614 1.79243 1.48714 1.20536 0.92897 0.92229 0.91514 0.93778 0.91570 0.89358 0.92288 0.95564 0.91336 0.87054 0.91622 0.83802 0.81716 0.82713 0.86095 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.91 71.99 0.71 -1.76 16 2 C -0.13 -2.71 5.93 30.60 0.18 -2.53 16 3 C -0.11 -2.43 5.21 30.60 0.16 -2.27 16 4 C -0.13 -3.92 5.54 30.59 0.17 -3.75 16 5 C 0.11 3.66 5.73 86.38 0.50 4.15 16 6 N -0.57 -24.50 2.73 -630.86 -1.72 -26.22 16 7 C 0.12 4.84 6.69 38.35 0.26 5.09 16 8 C -0.15 -4.10 9.74 22.47 0.22 -3.88 16 9 C -0.09 -2.12 10.02 22.21 0.22 -1.89 16 10 C -0.14 -3.74 10.07 22.32 0.22 -3.51 16 11 C -0.08 -3.02 10.04 22.18 0.22 -2.80 16 12 C -0.14 -6.11 5.63 -19.70 -0.11 -6.22 16 13 C 0.05 2.56 2.93 -12.67 -0.04 2.53 16 14 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 15 C -0.53 -31.01 8.61 25.60 0.22 -30.79 16 16 H 0.07 3.74 7.77 -2.91 -0.02 3.71 16 17 C 0.01 0.74 5.31 84.65 0.45 1.18 16 18 N -0.87 -55.30 10.89 21.45 0.23 -55.07 16 19 Si 0.96 45.76 29.54 68.60 2.03 47.79 16 20 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 23 C 0.51 28.27 7.36 87.94 0.65 28.92 16 24 O -0.52 -32.33 15.29 -3.04 -0.05 -32.38 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.11 2.80 7.61 -2.39 -0.02 2.78 16 35 H 0.07 2.38 7.95 -2.39 -0.02 2.36 16 36 H 0.14 3.12 7.70 -2.91 -0.02 3.10 16 37 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 38 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 39 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 40 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -75.10 333.42 5.53 -69.57 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.00 Total: 13.85 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 4.03 Total: -17.54 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -1.49 Total: -81.29 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.05 Total: -32.38 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -75.10 5.53 -69.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218748405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.869 kcal (2) G-P(sol) polarization free energy of solvation -75.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds