Wall clock time and date at job start Mon Mar 30 2020 02:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46659 * 2 1 4 4 H 1.09002 * 109.47146 * 304.99886 * 3 2 1 5 5 C 1.50700 * 109.46992 * 184.99932 * 3 2 1 6 6 H 1.07995 * 120.00487 * 239.99661 * 5 3 2 7 7 C 1.37880 * 119.99783 * 59.99875 * 5 3 2 8 8 N 1.31514 * 120.00155 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99800 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47273 * 90.00094 * 9 7 5 11 11 H 1.48502 * 109.47133 * 209.99761 * 9 7 5 12 12 H 1.48497 * 109.47161 * 329.99616 * 9 7 5 13 13 N 1.46499 * 109.47599 * 64.99944 * 3 2 1 14 14 C 1.34777 * 120.00092 * 274.99863 * 13 3 2 15 15 O 1.21279 * 119.99676 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00113 * 179.97438 * 14 13 3 17 17 C 1.54347 * 110.82282 * 180.02562 * 16 14 13 18 18 C 1.51370 * 105.25432 * 215.37588 * 17 16 14 19 19 C 1.38309 * 130.55124 * 197.14857 * 18 17 16 20 20 C 1.38105 * 120.28108 * 180.02562 * 19 18 17 21 21 C 1.38256 * 119.93490 * 0.03279 * 20 19 18 22 22 C 1.38107 * 119.93596 * 359.97438 * 21 20 19 23 23 C 1.38451 * 109.62635 * 17.23355 * 18 17 16 24 24 C 1.51365 * 109.79657 * 359.95699 * 23 18 17 25 25 H 1.09000 * 109.47404 * 299.99713 * 1 2 3 26 26 H 1.08994 * 109.47113 * 60.00393 * 1 2 3 27 27 H 1.08998 * 109.46906 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46964 * 239.99981 * 2 1 3 29 29 H 1.09003 * 109.47060 * 119.99442 * 2 1 3 30 30 H 0.97005 * 119.99917 * 180.02562 * 8 7 5 31 31 H 0.97002 * 119.99811 * 94.99445 * 13 3 2 32 32 H 1.09008 * 110.88284 * 303.51671 * 16 14 13 33 33 H 1.09002 * 110.30226 * 334.35029 * 17 16 14 34 34 H 1.08997 * 110.30441 * 96.40589 * 17 16 14 35 35 H 1.07991 * 119.82817 * 0.06382 * 19 18 17 36 36 H 1.07992 * 120.03227 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.03517 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.89218 * 180.02562 * 22 21 20 39 39 H 1.08994 * 110.30543 * 223.91072 * 24 23 18 40 40 H 1.09006 * 110.38145 * 101.80589 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8802 -1.3811 10 1 6.5539 -0.3519 -0.7598 11 1 6.3835 0.9215 -2.8165 12 1 6.5574 2.0721 -0.6890 13 7 1.6523 2.0976 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3393 2.6327 0.4340 16 6 0.0361 3.3377 2.6547 17 6 -1.3935 3.9109 2.5543 18 6 -1.3668 5.1913 3.3611 19 6 -2.4011 5.9486 3.8804 20 6 -2.1311 7.0992 4.5949 21 6 -0.8220 7.4976 4.7922 22 6 0.2132 6.7439 4.2749 23 6 -0.0555 5.5899 3.5576 24 6 0.8844 4.6041 2.8974 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 3.8293 -0.0610 -2.9499 31 1 2.2719 2.1232 1.9977 32 1 0.1189 2.6487 3.4953 33 1 -1.6434 4.1238 1.5149 34 1 -2.1124 3.2107 2.9797 35 1 -3.4239 5.6380 3.7268 36 1 -2.9418 7.6873 4.9989 37 1 -0.6090 8.3969 5.3510 38 1 1.2356 7.0556 4.4298 39 1 1.7208 4.3781 3.5586 40 1 1.2486 5.0026 1.9504 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234033374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:20 Heat of formation + Delta-G solvation = -29.067356 kcal Electronic energy + Delta-G solvation = -20719.678814 eV Core-core repulsion = 17691.256068 eV Total energy + Delta-G solvation = -3028.422745 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.36660 -38.74988 -35.63159 -34.75756 -32.38316 -31.44464 -30.96370 -29.13547 -27.27596 -26.85009 -23.74961 -22.69884 -21.35921 -20.92454 -19.83165 -19.22047 -17.26541 -16.30351 -15.96466 -15.58378 -15.39225 -14.89176 -14.43786 -14.17730 -13.77540 -13.30139 -13.06081 -12.82984 -12.72479 -12.67995 -12.16115 -11.98151 -11.47401 -11.25875 -11.22611 -11.08187 -10.99968 -10.93892 -10.80961 -10.79127 -10.31675 -10.16218 -9.63235 -9.05509 -8.96214 -8.83248 -8.50287 -8.48637 -7.81442 -6.12645 -4.22081 1.32150 1.35918 3.23651 3.30827 3.32592 3.37425 3.72638 4.03975 4.35893 4.40022 4.69654 4.94919 4.97915 5.07004 5.18708 5.20064 5.28526 5.47835 5.60125 5.67883 5.81230 5.85752 5.90526 6.09332 6.16991 6.31154 6.39510 6.41771 6.45092 6.46042 6.66058 6.66647 6.96919 7.04219 7.20087 7.37220 7.46540 7.62099 7.73684 7.90413 8.18324 8.68009 8.77813 9.14591 9.45555 10.92624 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.027666 B = 0.004143 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.827154 B = 6757.543787 C = 7561.459848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.706 5.706 14 C 0.510 3.490 15 O -0.547 6.547 16 C -0.112 4.112 17 C -0.068 4.068 18 C -0.089 4.089 19 C -0.110 4.110 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.107 4.107 23 C -0.094 4.094 24 C -0.071 4.071 25 H 0.038 0.962 26 H 0.049 0.951 27 H 0.022 0.978 28 H 0.099 0.901 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.388 0.612 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.081 0.919 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.057 9.264 13.319 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.353 5.353 14 C 0.294 3.706 15 O -0.425 6.425 16 C -0.134 4.134 17 C -0.105 4.105 18 C -0.089 4.089 19 C -0.128 4.128 20 C -0.141 4.141 21 C -0.144 4.144 22 C -0.125 4.125 23 C -0.094 4.094 24 C -0.108 4.108 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.117 0.883 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.220 0.780 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.094 0.906 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.100 0.900 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.569 9.120 12.425 17.171 hybrid contribution 1.316 -0.017 0.321 1.355 sum -6.252 9.103 12.746 16.865 Atomic orbital electron populations 1.21839 0.98366 0.98011 1.01228 1.21936 0.92604 0.99858 1.02251 1.18784 0.94163 0.89175 0.81092 0.93328 1.21238 0.90759 1.39001 1.06260 0.92104 1.24886 0.98558 0.94838 0.95387 1.69897 1.35098 1.37600 1.09352 0.86470 0.84948 0.78432 0.77379 1.20563 1.21088 1.19871 1.46481 1.14557 1.55761 1.18513 1.20025 0.82809 0.79172 0.88549 1.90658 1.51505 1.59972 1.40414 1.22025 0.96269 0.97195 0.97877 1.20945 0.95785 0.92713 1.01091 1.20724 0.93567 0.97103 0.97509 1.20565 0.98519 0.95134 0.98563 1.20998 0.96691 0.96778 0.99658 1.20993 0.92761 0.99823 1.00818 1.20629 0.99315 0.94375 0.98205 1.20678 0.95240 0.95742 0.97718 1.20984 0.96811 0.92130 1.00919 0.94281 0.93159 0.95896 0.88323 0.95070 0.92577 0.77974 0.88233 0.88063 0.90577 0.86309 0.86131 0.86123 0.86264 0.90018 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.51 37.16 0.32 -2.72 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.66 2.24 -69.08 -0.15 6.51 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -13.89 8.73 -34.44 -0.30 -14.19 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.54 11.29 55.43 0.63 -23.92 16 9 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.71 -14.12 5.02 -54.94 -0.28 -14.40 16 14 C 0.51 9.68 5.61 -10.99 -0.06 9.62 16 15 O -0.55 -12.32 12.65 5.56 0.07 -12.25 16 16 C -0.11 -1.61 3.47 -90.37 -0.31 -1.92 16 17 C -0.07 -0.95 6.10 -26.85 -0.16 -1.12 16 18 C -0.09 -1.17 6.15 -104.19 -0.64 -1.81 16 19 C -0.11 -1.26 10.03 -39.60 -0.40 -1.66 16 20 C -0.12 -1.26 10.05 -39.62 -0.40 -1.66 16 21 C -0.13 -1.29 10.05 -39.62 -0.40 -1.68 16 22 C -0.11 -1.22 10.04 -39.53 -0.40 -1.61 16 23 C -0.09 -1.21 6.14 -104.12 -0.64 -1.85 16 24 C -0.07 -0.93 6.31 -26.86 -0.17 -1.10 16 25 H 0.04 0.83 5.65 -51.93 -0.29 0.54 16 26 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 29 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.39 6.75 8.54 -40.82 -0.35 6.40 16 32 H 0.10 1.25 8.14 -51.92 -0.42 0.83 16 33 H 0.10 1.63 6.98 -51.93 -0.36 1.26 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.09 1.28 7.89 -51.93 -0.41 0.87 16 LS Contribution 323.40 15.07 4.87 4.87 Total: -1.00 -29.58 323.40 -9.55 -39.13 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -5.87 Total: 7.90 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -3.96 Total: -16.75 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.35 Total: -38.32 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: 0.07 Total: -12.25 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.58 -9.55 -39.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234033374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.068 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds