Wall clock time and date at job start Mon Mar 30 2020 02:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.46659 * 2 1 4 4 H 1.09002 * 109.47146 * 304.99886 * 3 2 1 5 5 C 1.50700 * 109.46992 * 184.99932 * 3 2 1 6 6 H 1.07995 * 120.00487 * 239.99661 * 5 3 2 7 7 C 1.37880 * 119.99783 * 59.99875 * 5 3 2 8 8 N 1.31514 * 120.00155 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99800 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47273 * 90.00094 * 9 7 5 11 11 H 1.48502 * 109.47133 * 209.99761 * 9 7 5 12 12 H 1.48497 * 109.47161 * 329.99616 * 9 7 5 13 13 N 1.46499 * 109.47599 * 64.99944 * 3 2 1 14 14 C 1.34777 * 120.00092 * 274.99863 * 13 3 2 15 15 O 1.21279 * 119.99676 * 359.97438 * 14 13 3 16 16 C 1.50693 * 120.00113 * 179.97438 * 14 13 3 17 17 C 1.54347 * 110.82282 * 180.02562 * 16 14 13 18 18 C 1.51370 * 105.25432 * 215.37588 * 17 16 14 19 19 C 1.38309 * 130.55124 * 197.14857 * 18 17 16 20 20 C 1.38105 * 120.28108 * 180.02562 * 19 18 17 21 21 C 1.38256 * 119.93490 * 0.03279 * 20 19 18 22 22 C 1.38107 * 119.93596 * 359.97438 * 21 20 19 23 23 C 1.38451 * 109.62635 * 17.23355 * 18 17 16 24 24 C 1.51365 * 109.79657 * 359.95699 * 23 18 17 25 25 H 1.09000 * 109.47404 * 299.99713 * 1 2 3 26 26 H 1.08994 * 109.47113 * 60.00393 * 1 2 3 27 27 H 1.08998 * 109.46906 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46964 * 239.99981 * 2 1 3 29 29 H 1.09003 * 109.47060 * 119.99442 * 2 1 3 30 30 H 0.97005 * 119.99917 * 180.02562 * 8 7 5 31 31 H 0.97002 * 119.99811 * 94.99445 * 13 3 2 32 32 H 1.09008 * 110.88284 * 303.51671 * 16 14 13 33 33 H 1.09002 * 110.30226 * 334.35029 * 17 16 14 34 34 H 1.08997 * 110.30441 * 96.40589 * 17 16 14 35 35 H 1.07991 * 119.82817 * 0.06382 * 19 18 17 36 36 H 1.07992 * 120.03227 * 180.02562 * 20 19 18 37 37 H 1.08000 * 120.03517 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.89218 * 180.02562 * 22 21 20 39 39 H 1.08994 * 110.30543 * 223.91072 * 24 23 18 40 40 H 1.09006 * 110.38145 * 101.80589 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3375 -2.1733 9 14 6.0049 0.8802 -1.3811 10 1 6.5539 -0.3519 -0.7598 11 1 6.3835 0.9215 -2.8165 12 1 6.5574 2.0721 -0.6890 13 7 1.6523 2.0976 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3393 2.6327 0.4340 16 6 0.0361 3.3377 2.6547 17 6 -1.3935 3.9109 2.5543 18 6 -1.3668 5.1913 3.3611 19 6 -2.4011 5.9486 3.8804 20 6 -2.1311 7.0992 4.5949 21 6 -0.8220 7.4976 4.7922 22 6 0.2132 6.7439 4.2749 23 6 -0.0555 5.5899 3.5576 24 6 0.8844 4.6041 2.8974 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8901 30 1 3.8293 -0.0610 -2.9499 31 1 2.2719 2.1232 1.9977 32 1 0.1189 2.6487 3.4953 33 1 -1.6434 4.1238 1.5149 34 1 -2.1124 3.2107 2.9797 35 1 -3.4239 5.6380 3.7268 36 1 -2.9418 7.6873 4.9989 37 1 -0.6090 8.3969 5.3510 38 1 1.2356 7.0556 4.4298 39 1 1.7208 4.3781 3.5586 40 1 1.2486 5.0026 1.9504 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234033374.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:20 Heat of formation + Delta-G solvation = -45.356766 kcal Electronic energy + Delta-G solvation = -20720.385175 eV Core-core repulsion = 17691.256068 eV Total energy + Delta-G solvation = -3029.129107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.51538 -40.12466 -37.13325 -36.17052 -34.27885 -32.82041 -32.28817 -30.28490 -28.81827 -28.16217 -25.34439 -24.22297 -22.47276 -21.83004 -21.51738 -20.84714 -18.90568 -17.67523 -17.24169 -17.02463 -16.77885 -16.21002 -15.77288 -15.68673 -15.25547 -14.60668 -14.23443 -14.15689 -13.92848 -13.85160 -13.55866 -13.52041 -13.22915 -13.07679 -12.86613 -12.65805 -12.19389 -12.13848 -12.12271 -12.06231 -11.99550 -11.64356 -11.57808 -11.03715 -10.62942 -10.47746 -9.69737 -9.60493 -9.39715 -8.15234 -6.32456 0.45403 0.50877 1.45090 1.45758 1.56002 1.85156 2.36310 2.63871 2.86905 3.14230 3.37364 3.59803 4.00117 4.06911 4.16708 4.20587 4.33350 4.41350 4.50122 4.58330 4.66127 4.70543 4.75870 4.77938 4.88582 4.91726 5.07445 5.10703 5.20105 5.26374 5.28695 5.45139 5.56805 5.58245 5.63851 5.65176 5.76229 5.81236 5.94904 6.14384 6.18554 6.76181 7.02149 7.34945 7.61435 8.90043 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.027666 B = 0.004143 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.827154 B = 6757.543787 C = 7561.459848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.969 3.031 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.702 5.702 14 C 0.508 3.492 15 O -0.586 6.586 16 C -0.101 4.101 17 C -0.065 4.065 18 C -0.109 4.109 19 C -0.119 4.119 20 C -0.123 4.123 21 C -0.125 4.125 22 C -0.115 4.115 23 C -0.111 4.111 24 C -0.066 4.066 25 H 0.045 0.955 26 H 0.024 0.976 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.264 0.736 31 H 0.404 0.596 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.136 0.864 39 H 0.104 0.896 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 10.407 16.054 20.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.014 0.986 5 C -0.586 4.586 6 H 0.090 0.910 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.350 5.350 14 C 0.295 3.705 15 O -0.468 6.468 16 C -0.123 4.123 17 C -0.103 4.103 18 C -0.109 4.109 19 C -0.137 4.137 20 C -0.141 4.141 21 C -0.143 4.143 22 C -0.133 4.133 23 C -0.111 4.111 24 C -0.103 4.103 25 H 0.064 0.936 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.238 0.762 32 H 0.145 0.855 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.150 0.850 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.154 0.846 39 H 0.123 0.877 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.027 10.277 15.203 19.650 hybrid contribution 1.070 -0.297 -0.523 1.228 sum -5.956 9.981 14.680 18.724 Atomic orbital electron populations 1.21679 0.96996 0.99121 1.00279 1.21786 0.93745 0.99220 1.01277 1.18356 0.93591 0.89155 0.81495 0.98560 1.21594 0.91488 1.38819 1.06653 0.90980 1.25766 1.03229 0.94442 0.95046 1.70054 1.37025 1.38423 1.09891 0.85391 0.79248 0.78880 0.77088 1.19690 1.21399 1.18858 1.46237 1.15501 1.55795 1.17506 1.20808 0.81733 0.78210 0.89720 1.90645 1.52549 1.61181 1.42380 1.21970 0.96826 0.97882 0.95573 1.20848 0.95706 0.93934 0.99797 1.20718 0.94452 0.97164 0.98576 1.20838 0.98859 0.95494 0.98519 1.21382 0.97759 0.96251 0.98663 1.21396 0.92425 1.00346 1.00084 1.20914 1.00735 0.93842 0.97780 1.20726 0.94895 0.96635 0.98815 1.20917 0.97432 0.91474 1.00506 0.93588 0.95694 0.93620 0.91123 0.93984 0.92666 0.76163 0.85520 0.90996 0.89522 0.85016 0.83349 0.83285 0.84598 0.87748 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.51 71.98 0.61 -4.95 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.80 16 3 C 0.28 14.13 2.24 44.24 0.10 14.23 16 4 H 0.00 -0.21 7.58 -2.39 -0.02 -0.23 16 5 C -0.55 -28.71 8.73 25.60 0.22 -28.49 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.81 5.29 84.66 0.45 1.26 16 8 N -0.92 -52.40 11.29 21.45 0.24 -52.16 16 9 Si 0.97 41.87 29.54 68.60 2.03 43.90 16 10 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 11 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 13 N -0.70 -28.30 5.02 -446.11 -2.24 -30.54 16 14 C 0.51 19.61 5.61 87.65 0.49 20.11 16 15 O -0.59 -27.61 12.65 -3.03 -0.04 -27.65 16 16 C -0.10 -2.84 3.47 -10.63 -0.04 -2.88 16 17 C -0.07 -1.83 6.10 30.52 0.19 -1.65 16 18 C -0.11 -2.75 6.15 -19.58 -0.12 -2.87 16 19 C -0.12 -2.51 10.03 22.25 0.22 -2.29 16 20 C -0.12 -2.13 10.05 22.24 0.22 -1.91 16 21 C -0.12 -2.13 10.05 22.24 0.22 -1.91 16 22 C -0.11 -2.32 10.04 22.30 0.22 -2.09 16 23 C -0.11 -2.70 6.14 -19.54 -0.12 -2.82 16 24 C -0.07 -1.66 6.31 30.51 0.19 -1.47 16 25 H 0.05 1.98 5.65 -2.39 -0.01 1.96 16 26 H 0.02 1.21 7.85 -2.39 -0.02 1.19 16 27 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 3.90 5.95 -2.39 -0.01 3.89 16 29 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 31 H 0.40 13.68 8.54 -92.71 -0.79 12.89 16 32 H 0.13 2.90 8.14 -2.38 -0.02 2.88 16 33 H 0.07 2.42 6.98 -2.39 -0.02 2.41 16 34 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.13 2.32 8.06 -2.92 -0.02 2.30 16 36 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 37 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.07 1.96 7.89 -2.38 -0.02 1.94 16 Total: -1.00 -66.15 323.40 3.27 -62.87 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: 0.25 Total: 27.10 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 3.04 Total: -23.52 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -2.00 Total: -82.70 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.04 Total: -27.65 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -66.15 3.27 -62.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234033374.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.516 kcal (2) G-P(sol) polarization free energy of solvation -66.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds