Wall clock time and date at job start Mon Mar 30 2020 01:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47099 * 2 1 4 4 C 1.52998 * 109.46903 * 119.99794 * 2 1 3 5 5 C 1.50701 * 109.46855 * 174.99794 * 4 2 1 6 6 C 1.38413 * 119.82203 * 90.00391 * 5 4 2 7 7 C 1.37881 * 120.17501 * 180.27030 * 6 5 4 8 8 C 1.39878 * 119.81866 * 359.46211 * 7 6 5 9 9 C 1.47143 * 120.17373 * 180.25064 * 8 7 6 10 10 C 1.34983 * 120.00303 * 44.01746 * 9 8 7 11 11 C 1.46229 * 119.99396 * 10.10997 * 10 9 8 12 12 O 1.21751 * 120.00307 * 7.34337 * 11 10 9 13 13 N 1.34784 * 119.99722 * 187.34176 * 11 10 9 14 14 C 1.36711 * 119.99888 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00325 * 359.97438 * 14 13 11 16 16 C 1.39123 * 120.00027 * 179.97438 * 14 13 11 17 17 N 1.31331 * 119.99807 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00290 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47010 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46900 * 120.00022 * 18 16 14 21 21 H 1.48499 * 109.47317 * 239.99968 * 18 16 14 22 22 C 1.39881 * 119.65641 * 0.51250 * 8 7 6 23 23 C 1.37877 * 119.81664 * 359.75374 * 22 8 7 24 24 H 1.08999 * 109.46969 * 300.00215 * 1 2 3 25 25 H 1.09003 * 109.46835 * 59.99778 * 1 2 3 26 26 H 1.09003 * 109.47239 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46969 * 239.99785 * 2 1 3 28 28 H 1.09003 * 109.47458 * 299.99841 * 3 2 1 29 29 H 1.08999 * 109.47386 * 60.00040 * 3 2 1 30 30 H 1.09004 * 109.47294 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47162 * 55.00479 * 4 2 1 32 32 H 1.08997 * 109.47579 * 295.00058 * 4 2 1 33 33 H 1.08001 * 119.91235 * 0.02562 * 6 5 4 34 34 H 1.08001 * 120.08910 * 179.72271 * 7 6 5 35 35 H 1.08003 * 120.00239 * 224.02570 * 9 8 7 36 36 H 1.07990 * 120.00342 * 190.11360 * 10 9 8 37 37 H 0.97003 * 119.99653 * 0.02562 * 13 11 10 38 38 H 0.96996 * 119.99657 * 180.02562 * 17 16 14 39 39 H 1.07994 * 120.08651 * 179.78487 * 22 8 7 40 40 H 1.08005 * 119.90559 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8294 1.1889 6 6 4.3266 0.1746 1.7292 7 6 5.7014 0.0858 1.6731 8 6 6.3027 -1.0282 1.0780 9 6 7.7691 -1.1337 1.0187 10 6 8.5124 -0.8248 2.1022 11 6 7.8641 -0.6007 3.3937 12 8 6.6741 -0.8222 3.5241 13 7 8.5841 -0.1489 4.4397 14 6 7.9782 0.0602 5.6472 15 1 6.9225 -0.1363 5.7630 16 6 8.7215 0.5260 6.7271 17 7 10.0051 0.7654 6.5863 18 14 7.8935 0.8123 8.3769 19 1 6.4519 0.4714 8.2730 20 1 8.5326 -0.0455 9.4070 21 1 8.0376 2.2392 8.7621 22 6 5.5026 -2.0388 0.5346 23 6 4.1293 -1.9324 0.5939 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6054 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1370 33 1 3.8608 1.0318 2.1926 34 1 6.3123 0.8721 2.0912 35 1 8.2509 -1.4581 0.1081 36 1 9.5857 -0.7432 2.0154 37 1 9.5322 0.0279 4.3357 38 1 10.5233 1.0898 7.3393 39 1 5.9595 -2.9003 0.0704 40 1 3.5102 -2.7117 0.1744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255412709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:27 Heat of formation + Delta-G solvation = -11.397096 kcal Electronic energy + Delta-G solvation = -20344.152783 eV Core-core repulsion = 17316.496278 eV Total energy + Delta-G solvation = -3027.656505 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.27116 -38.05156 -36.10894 -34.19376 -32.80699 -31.36815 -30.34397 -29.86078 -27.14504 -26.36335 -25.00712 -22.54248 -21.84209 -20.66737 -19.80438 -18.55332 -17.71196 -16.52478 -15.63292 -15.06064 -14.79163 -14.38468 -14.30619 -14.15098 -13.83496 -13.53343 -13.17073 -12.99511 -12.63106 -12.48376 -12.22777 -12.06739 -11.81945 -11.61705 -11.55902 -11.18689 -11.06924 -10.87830 -10.64738 -10.41447 -10.38976 -10.34282 -10.30676 -9.65195 -9.13873 -8.52900 -8.20650 -7.92941 -7.21815 -6.56749 -3.86711 1.40885 2.12954 2.52836 3.14446 3.20795 3.28352 4.09737 4.36809 4.42880 4.88018 4.91995 5.00226 5.08911 5.29993 5.34045 5.40261 5.46849 5.56202 5.59164 5.68664 5.70549 5.82869 5.87860 5.95544 5.99277 6.00959 6.10476 6.19083 6.27508 6.33746 6.39627 6.59698 6.65485 6.77029 6.92406 7.10024 7.19739 7.34384 7.42423 7.65334 7.99698 8.54164 9.08889 9.46485 10.05669 10.60009 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.004274 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.863471 B = 6549.831903 C = 7506.172275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.073 4.073 5 C -0.081 4.081 6 C -0.131 4.131 7 C -0.018 4.018 8 C -0.048 4.048 9 C -0.087 4.087 10 C -0.169 4.169 11 C 0.445 3.555 12 O -0.582 6.582 13 N -0.542 5.542 14 C -0.291 4.291 15 H 0.108 0.892 16 C 0.022 3.978 17 N -0.889 5.889 18 Si 0.932 3.068 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.110 4.110 23 C -0.140 4.140 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.393 0.607 38 H 0.274 0.726 39 H 0.111 0.889 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.811 -0.895 -12.444 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.208 4.208 4 C -0.111 4.111 5 C -0.081 4.081 6 C -0.149 4.149 7 C -0.036 4.036 8 C -0.048 4.048 9 C -0.109 4.109 10 C -0.191 4.191 11 C 0.234 3.766 12 O -0.470 6.470 13 N -0.175 5.175 14 C -0.421 4.421 15 H 0.125 0.875 16 C -0.181 4.181 17 N -0.529 5.529 18 Si 0.758 3.242 19 H -0.190 1.190 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.128 4.128 23 C -0.158 4.158 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.134 0.866 37 H 0.226 0.774 38 H 0.085 0.915 39 H 0.129 0.871 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.427 -0.948 -12.140 16.032 hybrid contribution 0.559 0.154 1.003 1.159 sum -9.868 -0.794 -11.137 14.901 Atomic orbital electron populations 1.21859 0.95556 1.01460 1.01548 1.21071 0.94933 0.96632 0.98204 1.21918 1.02134 0.95617 1.01088 1.20630 0.91988 1.00565 0.97888 1.19690 0.94640 0.94832 0.98937 1.20714 0.93595 0.98912 1.01667 1.21042 0.94067 0.96768 0.91745 1.18749 0.92469 0.94909 0.98704 1.21993 0.92392 0.99127 0.97370 1.23177 0.99420 1.02357 0.94104 1.17918 0.87715 0.86132 0.84797 1.90711 1.14686 1.57733 1.83842 1.41997 1.11489 1.54532 1.09469 1.19866 0.96325 1.39714 0.86168 0.87456 1.25396 0.95454 0.96949 1.00332 1.69588 1.06351 1.43933 1.33018 0.85760 0.79610 0.78002 0.80818 1.19010 1.20555 1.20557 1.21031 0.93443 0.97878 1.00452 1.20607 0.94446 0.98040 1.02731 0.92746 0.92931 0.92877 0.91294 0.93293 0.92876 0.91736 0.91596 0.91383 0.87161 0.86946 0.86211 0.86603 0.77396 0.91550 0.87087 0.87332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.19 37.16 0.34 -0.99 16 2 C -0.09 -0.97 2.91 -90.62 -0.26 -1.24 16 3 C -0.15 -1.65 8.75 37.15 0.33 -1.33 16 4 C -0.07 -0.93 4.83 -27.88 -0.13 -1.06 16 5 C -0.08 -1.27 4.72 -104.49 -0.49 -1.77 16 6 C -0.13 -2.31 7.93 -39.65 -0.31 -2.62 16 7 C -0.02 -0.34 6.58 -39.10 -0.26 -0.60 16 8 C -0.05 -0.89 4.55 -105.05 -0.48 -1.37 16 9 C -0.09 -1.49 9.81 -37.13 -0.36 -1.86 16 10 C -0.17 -3.20 9.92 -37.53 -0.37 -3.57 16 11 C 0.44 10.62 6.73 -13.05 -0.09 10.54 16 12 O -0.58 -15.42 11.68 5.14 0.06 -15.36 16 13 N -0.54 -13.74 5.27 -12.31 -0.06 -13.81 16 14 C -0.29 -7.98 9.68 -15.05 -0.15 -8.12 16 15 H 0.11 3.10 7.15 -52.48 -0.38 2.73 16 16 C 0.02 0.58 5.50 -17.44 -0.10 0.48 16 17 N -0.89 -23.72 13.05 55.51 0.72 -23.00 16 18 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 22 C -0.11 -1.83 9.80 -39.10 -0.38 -2.21 16 23 C -0.14 -2.19 9.68 -39.65 -0.38 -2.57 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.80 6.26 -51.93 -0.33 0.48 16 31 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 33 H 0.11 1.81 8.03 -52.49 -0.42 1.39 16 34 H 0.11 2.35 7.00 -52.49 -0.37 1.98 16 35 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.39 9.54 7.87 -40.82 -0.32 9.21 16 38 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 333.32 15.07 5.02 5.02 Total: -1.00 -29.78 333.32 -8.40 -38.18 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -6.01 Total: 11.63 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -3.11 Total: -18.30 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.66 Total: -36.80 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: 0.06 Total: -15.36 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.78 -8.40 -38.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255412709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.780 kcal (2) G-P(sol) polarization free energy of solvation -29.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds