Wall clock time and date at job start Mon Mar 30 2020 01:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47099 * 2 1 4 4 C 1.52998 * 109.46903 * 119.99794 * 2 1 3 5 5 C 1.50701 * 109.46855 * 174.99794 * 4 2 1 6 6 C 1.38413 * 119.82203 * 90.00391 * 5 4 2 7 7 C 1.37881 * 120.17501 * 180.27030 * 6 5 4 8 8 C 1.39878 * 119.81866 * 359.46211 * 7 6 5 9 9 C 1.47143 * 120.17373 * 180.25064 * 8 7 6 10 10 C 1.34983 * 120.00303 * 44.01746 * 9 8 7 11 11 C 1.46229 * 119.99396 * 10.10997 * 10 9 8 12 12 O 1.21751 * 120.00307 * 7.34337 * 11 10 9 13 13 N 1.34784 * 119.99722 * 187.34176 * 11 10 9 14 14 C 1.36711 * 119.99888 * 180.02562 * 13 11 10 15 15 H 1.08003 * 120.00325 * 359.97438 * 14 13 11 16 16 C 1.39123 * 120.00027 * 179.97438 * 14 13 11 17 17 N 1.31331 * 119.99807 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00290 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47010 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46900 * 120.00022 * 18 16 14 21 21 H 1.48499 * 109.47317 * 239.99968 * 18 16 14 22 22 C 1.39881 * 119.65641 * 0.51250 * 8 7 6 23 23 C 1.37877 * 119.81664 * 359.75374 * 22 8 7 24 24 H 1.08999 * 109.46969 * 300.00215 * 1 2 3 25 25 H 1.09003 * 109.46835 * 59.99778 * 1 2 3 26 26 H 1.09003 * 109.47239 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46969 * 239.99785 * 2 1 3 28 28 H 1.09003 * 109.47458 * 299.99841 * 3 2 1 29 29 H 1.08999 * 109.47386 * 60.00040 * 3 2 1 30 30 H 1.09004 * 109.47294 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47162 * 55.00479 * 4 2 1 32 32 H 1.08997 * 109.47579 * 295.00058 * 4 2 1 33 33 H 1.08001 * 119.91235 * 0.02562 * 6 5 4 34 34 H 1.08001 * 120.08910 * 179.72271 * 7 6 5 35 35 H 1.08003 * 120.00239 * 224.02570 * 9 8 7 36 36 H 1.07990 * 120.00342 * 190.11360 * 10 9 8 37 37 H 0.97003 * 119.99653 * 0.02562 * 13 11 10 38 38 H 0.96996 * 119.99657 * 180.02562 * 17 16 14 39 39 H 1.07994 * 120.08651 * 179.78487 * 22 8 7 40 40 H 1.08005 * 119.90559 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8294 1.1889 6 6 4.3266 0.1746 1.7292 7 6 5.7014 0.0858 1.6731 8 6 6.3027 -1.0282 1.0780 9 6 7.7691 -1.1337 1.0187 10 6 8.5124 -0.8248 2.1022 11 6 7.8641 -0.6007 3.3937 12 8 6.6741 -0.8222 3.5241 13 7 8.5841 -0.1489 4.4397 14 6 7.9782 0.0602 5.6472 15 1 6.9225 -0.1363 5.7630 16 6 8.7215 0.5260 6.7271 17 7 10.0051 0.7654 6.5863 18 14 7.8935 0.8123 8.3769 19 1 6.4519 0.4714 8.2730 20 1 8.5326 -0.0455 9.4070 21 1 8.0376 2.2392 8.7621 22 6 5.5026 -2.0388 0.5346 23 6 4.1293 -1.9324 0.5939 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6054 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1370 33 1 3.8608 1.0318 2.1926 34 1 6.3123 0.8721 2.0912 35 1 8.2509 -1.4581 0.1081 36 1 9.5857 -0.7432 2.0154 37 1 9.5322 0.0279 4.3357 38 1 10.5233 1.0898 7.3393 39 1 5.9595 -2.9003 0.0704 40 1 3.5102 -2.7117 0.1744 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255412709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:26 Heat of formation + Delta-G solvation = -27.243640 kcal Electronic energy + Delta-G solvation = -20344.839941 eV Core-core repulsion = 17316.496278 eV Total energy + Delta-G solvation = -3028.343663 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.75647 -39.67908 -37.24064 -36.01575 -34.28017 -33.32197 -31.69154 -31.16399 -27.99741 -27.80396 -26.65131 -24.01019 -23.23679 -22.07735 -20.81798 -20.36059 -19.49912 -18.15925 -16.97073 -16.57665 -16.31328 -15.95144 -15.66427 -15.27463 -15.23358 -15.08238 -14.66055 -14.26688 -14.09813 -13.90247 -13.50056 -13.26868 -13.09153 -12.96901 -12.95082 -12.58843 -12.44602 -12.21085 -12.14546 -11.92402 -11.65954 -11.57689 -11.47712 -11.44376 -10.56987 -10.28426 -10.06628 -9.46086 -8.71546 -8.53008 -5.95045 -0.01194 0.75489 1.11268 1.38406 1.40390 1.52809 2.26687 2.53110 3.07777 3.32168 3.37053 3.88396 3.96047 4.03928 4.11587 4.17806 4.27691 4.39857 4.44576 4.60283 4.67914 4.71826 4.79864 4.85433 4.93216 4.98908 5.09230 5.11317 5.19949 5.25863 5.29938 5.36698 5.38741 5.47809 5.48751 5.53023 5.72455 5.86982 5.89642 6.05881 6.31870 6.58108 7.09872 7.54460 8.14707 8.64018 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.004274 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.863471 B = 6549.831903 C = 7506.172275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.151 4.151 4 C -0.073 4.073 5 C -0.077 4.077 6 C -0.146 4.146 7 C -0.042 4.042 8 C -0.082 4.082 9 C -0.049 4.049 10 C -0.200 4.200 11 C 0.449 3.551 12 O -0.612 6.612 13 N -0.560 5.560 14 C -0.327 4.327 15 H 0.080 0.920 16 C -0.013 4.013 17 N -0.915 5.915 18 Si 0.994 3.006 19 H -0.274 1.274 20 H -0.269 1.269 21 H -0.269 1.269 22 C -0.109 4.109 23 C -0.142 4.142 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.170 0.830 36 H 0.147 0.853 37 H 0.395 0.605 38 H 0.280 0.720 39 H 0.141 0.859 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.993 -2.164 -14.246 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.208 4.208 4 C -0.110 4.110 5 C -0.077 4.077 6 C -0.164 4.164 7 C -0.060 4.060 8 C -0.082 4.082 9 C -0.069 4.069 10 C -0.221 4.221 11 C 0.240 3.760 12 O -0.501 6.501 13 N -0.194 5.194 14 C -0.457 4.457 15 H 0.098 0.902 16 C -0.214 4.214 17 N -0.555 5.555 18 Si 0.817 3.183 19 H -0.199 1.199 20 H -0.194 1.194 21 H -0.194 1.194 22 C -0.127 4.127 23 C -0.160 4.160 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.187 0.813 36 H 0.165 0.835 37 H 0.228 0.772 38 H 0.089 0.911 39 H 0.159 0.841 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.603 -2.217 -13.969 18.294 hybrid contribution 0.742 0.496 1.311 1.586 sum -10.861 -1.721 -12.657 16.767 Atomic orbital electron populations 1.21824 0.93818 1.02289 1.02116 1.21033 0.96288 0.95876 0.97111 1.21916 1.00826 0.96318 1.01746 1.20700 0.89803 1.01711 0.98768 1.20059 0.96307 0.93985 0.97351 1.20843 0.93300 0.99895 1.02379 1.20971 0.94782 0.97168 0.93122 1.19077 0.93741 0.95458 0.99930 1.22572 0.91744 0.94434 0.98155 1.23128 1.01070 1.05691 0.92170 1.18809 0.87369 0.83725 0.86102 1.90687 1.16243 1.58275 1.84886 1.41986 1.11577 1.56393 1.09458 1.19711 0.95529 1.42449 0.87996 0.90215 1.26119 0.96033 0.96216 1.03007 1.69642 1.07105 1.44680 1.34068 0.84862 0.78080 0.78409 0.76949 1.19860 1.19399 1.19412 1.21415 0.93913 0.97928 0.99404 1.21053 0.94677 0.98427 1.01873 0.92787 0.91820 0.91933 0.91012 0.91858 0.93048 0.93737 0.90049 0.91908 0.87332 0.89952 0.81287 0.83498 0.77150 0.91064 0.84079 0.84066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.19 71.98 0.66 -1.53 16 2 C -0.08 -1.64 2.91 -10.79 -0.03 -1.68 16 3 C -0.15 -3.17 8.75 71.98 0.63 -2.53 16 4 C -0.07 -1.71 4.83 29.85 0.14 -1.56 16 5 C -0.08 -2.34 4.72 -19.78 -0.09 -2.43 16 6 C -0.15 -5.29 7.93 22.23 0.18 -5.11 16 7 C -0.04 -1.69 6.58 22.58 0.15 -1.54 16 8 C -0.08 -2.96 4.55 -20.14 -0.09 -3.05 16 9 C -0.05 -1.55 9.81 23.86 0.23 -1.32 16 10 C -0.20 -7.42 9.92 23.60 0.23 -7.19 16 11 C 0.45 22.18 6.73 86.32 0.58 22.76 16 12 O -0.61 -33.76 11.68 -4.51 -0.05 -33.81 16 13 N -0.56 -29.67 5.27 -311.04 -1.64 -31.31 16 14 C -0.33 -18.86 9.68 84.15 0.81 -18.04 16 15 H 0.08 4.92 7.15 -2.91 -0.02 4.90 16 16 C -0.01 -0.72 5.50 84.98 0.47 -0.25 16 17 N -0.91 -49.83 13.05 21.69 0.28 -49.55 16 18 Si 0.99 43.35 29.55 68.60 2.03 45.38 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 22 C -0.11 -3.32 9.80 22.58 0.22 -3.10 16 23 C -0.14 -4.07 9.68 22.22 0.22 -3.85 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 1.10 6.26 -2.39 -0.01 1.09 16 31 H 0.08 1.68 8.08 -2.39 -0.02 1.66 16 32 H 0.06 1.55 8.08 -2.39 -0.02 1.53 16 33 H 0.11 3.80 8.03 -2.91 -0.02 3.78 16 34 H 0.08 3.71 7.00 -2.91 -0.02 3.69 16 35 H 0.17 3.71 8.06 -2.91 -0.02 3.69 16 36 H 0.15 4.48 8.06 -2.92 -0.02 4.45 16 37 H 0.39 19.99 7.87 -92.71 -0.73 19.26 16 38 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 39 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 40 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -67.45 333.32 5.22 -62.23 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: 0.29 Total: 37.48 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 4.31 Total: -30.42 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -1.36 Total: -80.86 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.05 Total: -33.81 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -67.45 5.22 -62.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255412709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.984 kcal (2) G-P(sol) polarization free energy of solvation -67.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds