Wall clock time and date at job start Mon Mar 30 2020 01:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47739 * 2 1 4 4 C 1.53008 * 109.46936 * 240.00226 * 2 1 3 5 5 C 1.50706 * 109.47067 * 120.00762 * 2 1 3 6 6 C 1.33032 * 119.99734 * 359.97438 * 5 2 1 7 7 C 1.47044 * 119.99975 * 180.02562 * 6 5 2 8 8 O 1.21630 * 119.99766 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00033 * 180.02562 * 7 6 5 10 10 C 1.39109 * 119.99867 * 185.10311 * 9 7 6 11 11 C 1.39513 * 119.83711 * 34.38577 * 10 9 7 12 12 C 1.36358 * 120.16662 * 180.27589 * 11 10 9 13 13 C 1.40884 * 119.82521 * 359.46324 * 12 11 10 14 14 C 1.41141 * 120.15762 * 180.27031 * 13 12 11 15 15 H 1.07994 * 120.00196 * 205.50697 * 14 13 12 16 16 C 1.39916 * 119.99746 * 25.50935 * 14 13 12 17 17 N 1.30873 * 120.00126 * 16.69702 * 16 14 13 18 18 Si 1.86798 * 119.99819 * 196.69686 * 16 14 13 19 19 H 1.48504 * 109.46999 * 60.00150 * 18 16 14 20 20 H 1.48495 * 109.47131 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47139 * 300.00337 * 18 16 14 22 22 C 1.40876 * 119.68235 * 0.55984 * 13 12 11 23 23 C 1.36359 * 119.82947 * 359.71025 * 22 13 12 24 24 H 1.09000 * 109.46960 * 299.99962 * 1 2 3 25 25 H 1.09003 * 109.46554 * 59.99652 * 1 2 3 26 26 H 1.08997 * 109.47439 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47546 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47575 * 300.00683 * 3 2 1 29 29 H 1.09004 * 109.46574 * 60.00370 * 3 2 1 30 30 H 1.08997 * 109.47036 * 300.00222 * 4 2 1 31 31 H 1.08995 * 109.47061 * 60.00101 * 4 2 1 32 32 H 1.09003 * 109.46651 * 180.02562 * 4 2 1 33 33 H 1.08002 * 119.99605 * 180.02562 * 5 2 1 34 34 H 1.08002 * 120.00632 * 0.02562 * 6 5 2 35 35 H 0.96999 * 120.00339 * 5.10135 * 9 7 6 36 36 H 1.08002 * 119.91807 * 0.02562 * 11 10 9 37 37 H 1.07999 * 120.08700 * 179.70602 * 12 11 10 38 38 H 0.96998 * 119.99451 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.08871 * 179.69613 * 22 13 12 40 40 H 1.07997 * 119.91287 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7106 1.2304 6 6 1.1678 -1.2158 2.1062 7 6 1.6579 -1.9087 3.3071 8 8 2.8537 -2.0194 3.4998 9 7 0.7820 -2.4210 4.1941 10 6 1.2420 -2.9821 5.3810 11 6 2.3652 -2.4469 6.0122 12 6 2.8252 -2.9951 7.1729 13 6 2.1565 -4.0976 7.7404 14 6 2.6232 -4.6670 8.9446 15 1 2.4115 -5.7016 9.1704 16 6 3.3601 -3.8909 9.8458 17 7 3.3447 -2.5857 9.7504 18 14 4.3660 -4.7176 11.1853 19 1 5.3804 -5.6071 10.5647 20 1 5.0483 -3.6822 12.0023 21 1 3.4684 -5.5208 12.0539 22 6 1.0233 -4.6329 7.0970 23 6 0.5782 -4.0776 5.9339 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1302 1.4424 0.0005 28 1 1.6768 1.9564 -0.8899 29 1 1.6768 1.9562 0.8901 30 1 1.6766 -1.7489 -1.2494 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7216 -1.2491 33 1 3.0942 -0.8089 1.4015 34 1 0.1059 -1.1172 1.9354 35 1 -0.1691 -2.3984 4.0050 36 1 2.8740 -1.5988 5.5784 37 1 3.6976 -2.5828 7.6580 38 1 3.8554 -2.0477 10.3755 39 1 0.5085 -5.4810 7.5237 40 1 -0.2902 -4.4871 5.4393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264673228.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:12 Heat of formation + Delta-G solvation = -16.155209 kcal Electronic energy + Delta-G solvation = -19910.126056 eV Core-core repulsion = 16882.263223 eV Total energy + Delta-G solvation = -3027.862833 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.63719 -38.02905 -37.03340 -34.41005 -32.91331 -31.49220 -29.46848 -28.91598 -27.57324 -27.45857 -25.35214 -23.31327 -21.35238 -20.79562 -19.45064 -18.28389 -17.30678 -17.09936 -16.29856 -15.23805 -14.93615 -14.58244 -14.52124 -14.21745 -13.88804 -13.66593 -13.00355 -12.64570 -12.57011 -12.33914 -12.14168 -12.01703 -11.90972 -11.80755 -11.37897 -11.25395 -11.10489 -11.09027 -11.07318 -10.87298 -10.67400 -9.91329 -9.62486 -9.37945 -9.33375 -9.04226 -8.84334 -7.49965 -6.95593 -6.70829 -4.27641 1.53789 2.75012 3.08320 3.09873 3.11493 3.19480 3.81651 3.85764 3.95084 4.54054 4.59487 4.66769 4.75622 5.10488 5.21222 5.32456 5.39291 5.46220 5.53957 5.64090 5.64294 5.73808 5.80312 5.91892 6.00401 6.07309 6.17242 6.38633 6.46646 6.49963 6.84655 7.03633 7.07616 7.19027 7.32305 7.61988 7.73039 8.00339 8.07453 8.25092 8.36727 8.64867 8.84722 8.90403 9.04606 10.20664 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.039729 B = 0.003184 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.612887 B = 8791.476786 C = 9162.743093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.067 4.067 6 C -0.210 4.210 7 C 0.526 3.474 8 O -0.538 6.538 9 N -0.646 5.646 10 C -0.005 4.005 11 C -0.085 4.085 12 C -0.154 4.154 13 C 0.106 3.894 14 C -0.459 4.459 15 H 0.078 0.922 16 C 0.074 3.926 17 N -0.792 5.792 18 Si 0.909 3.091 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.266 1.266 22 C -0.216 4.216 23 C -0.105 4.105 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.394 0.606 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.281 0.719 39 H 0.096 0.904 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.054 5.826 -15.477 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.047 4.047 3 C -0.196 4.196 4 C -0.195 4.195 5 C -0.087 4.087 6 C -0.230 4.230 7 C 0.315 3.685 8 O -0.417 6.417 9 N -0.288 5.288 10 C -0.098 4.098 11 C -0.105 4.105 12 C -0.174 4.174 13 C 0.103 3.897 14 C -0.488 4.488 15 H 0.096 0.904 16 C -0.144 4.144 17 N -0.417 5.417 18 Si 0.734 3.266 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.236 4.236 23 C -0.125 4.125 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.227 0.773 36 H 0.118 0.882 37 H 0.138 0.862 38 H 0.092 0.908 39 H 0.114 0.886 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.128 5.986 -15.209 16.858 hybrid contribution -0.144 -0.293 0.624 0.704 sum -4.272 5.692 -14.586 16.230 Atomic orbital electron populations 1.22003 0.94200 1.02187 1.02061 1.19756 0.95883 0.95550 0.93536 1.21827 1.01432 0.94285 1.02012 1.21826 1.01425 1.00341 0.95929 1.23637 1.00424 0.92031 0.92610 1.22822 1.00647 1.03445 0.96120 1.18595 0.86485 0.80063 0.83309 1.90780 1.15705 1.58580 1.76614 1.42889 1.09068 1.58574 1.18255 1.17172 1.02932 1.00014 0.89674 1.20414 0.95967 0.99084 0.95018 1.20982 1.01447 1.00048 0.94948 1.17660 0.89092 0.91171 0.91774 1.19517 1.29177 0.98237 1.01886 0.90426 1.25931 0.95167 0.94549 0.98717 1.69836 1.32583 1.05438 1.33871 0.86350 0.80345 0.79821 0.80096 1.18806 1.20340 1.19024 1.20541 0.99812 1.04366 0.98849 1.20042 0.99767 0.95123 0.97555 0.92052 0.92372 0.92096 0.92217 0.92236 0.92291 0.92337 0.92238 0.92224 0.85650 0.85540 0.77270 0.88157 0.86226 0.90785 0.88631 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 7.13 37.16 0.26 -0.89 16 2 C -0.05 -0.43 0.99 -155.66 -0.15 -0.58 16 3 C -0.14 -1.14 8.46 37.16 0.31 -0.82 16 4 C -0.14 -1.11 8.46 37.16 0.31 -0.80 16 5 C -0.07 -0.82 8.33 -36.11 -0.30 -1.13 16 6 C -0.21 -2.81 9.00 -37.82 -0.34 -3.15 16 7 C 0.53 9.81 7.48 -12.69 -0.09 9.72 16 8 O -0.54 -12.34 13.93 5.25 0.07 -12.27 16 9 N -0.65 -11.99 5.30 -10.82 -0.06 -12.05 16 10 C -0.01 -0.13 6.27 -83.61 -0.52 -0.65 16 11 C -0.08 -2.19 8.57 -39.78 -0.34 -2.53 16 12 C -0.15 -4.24 8.63 -39.26 -0.34 -4.57 16 13 C 0.11 2.89 5.57 -106.80 -0.59 2.29 16 14 C -0.46 -12.35 9.04 -37.85 -0.34 -12.69 16 15 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 16 C 0.07 1.89 5.15 -17.33 -0.09 1.81 16 17 N -0.79 -20.88 10.95 55.55 0.61 -20.27 16 18 Si 0.91 18.95 29.59 -169.99 -5.03 13.92 16 19 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 C -0.22 -5.34 9.74 -39.26 -0.38 -5.72 16 23 C -0.10 -2.36 9.90 -39.78 -0.39 -2.76 16 24 H 0.06 0.49 7.50 -51.93 -0.39 0.10 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.47 7.50 -51.93 -0.39 0.08 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.13 1.75 7.49 -52.49 -0.39 1.35 16 34 H 0.13 1.33 5.75 -52.49 -0.30 1.02 16 35 H 0.39 5.70 8.80 -40.82 -0.36 5.35 16 36 H 0.10 2.60 6.46 -52.49 -0.34 2.26 16 37 H 0.12 3.39 6.18 -52.49 -0.32 3.07 16 38 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 39 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 332.77 15.07 5.01 5.01 Total: -1.00 -30.73 332.77 -8.24 -38.98 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.85 Total: 9.15 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -3.00 Total: -22.47 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.55 Total: -32.32 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.07 Total: -12.27 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.73 -8.24 -38.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264673228.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.821 kcal (2) G-P(sol) polarization free energy of solvation -30.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds