Wall clock time and date at job start Mon Mar 30 2020 01:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47739 * 2 1 4 4 C 1.53008 * 109.46936 * 240.00226 * 2 1 3 5 5 C 1.50706 * 109.47067 * 120.00762 * 2 1 3 6 6 C 1.33032 * 119.99734 * 359.97438 * 5 2 1 7 7 C 1.47044 * 119.99975 * 180.02562 * 6 5 2 8 8 O 1.21630 * 119.99766 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00033 * 180.02562 * 7 6 5 10 10 C 1.39109 * 119.99867 * 185.10311 * 9 7 6 11 11 C 1.39513 * 119.83711 * 34.38577 * 10 9 7 12 12 C 1.36358 * 120.16662 * 180.27589 * 11 10 9 13 13 C 1.40884 * 119.82521 * 359.46324 * 12 11 10 14 14 C 1.41141 * 120.15762 * 180.27031 * 13 12 11 15 15 H 1.07994 * 120.00196 * 205.50697 * 14 13 12 16 16 C 1.39916 * 119.99746 * 25.50935 * 14 13 12 17 17 N 1.30873 * 120.00126 * 16.69702 * 16 14 13 18 18 Si 1.86798 * 119.99819 * 196.69686 * 16 14 13 19 19 H 1.48504 * 109.46999 * 60.00150 * 18 16 14 20 20 H 1.48495 * 109.47131 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47139 * 300.00337 * 18 16 14 22 22 C 1.40876 * 119.68235 * 0.55984 * 13 12 11 23 23 C 1.36359 * 119.82947 * 359.71025 * 22 13 12 24 24 H 1.09000 * 109.46960 * 299.99962 * 1 2 3 25 25 H 1.09003 * 109.46554 * 59.99652 * 1 2 3 26 26 H 1.08997 * 109.47439 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47546 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47575 * 300.00683 * 3 2 1 29 29 H 1.09004 * 109.46574 * 60.00370 * 3 2 1 30 30 H 1.08997 * 109.47036 * 300.00222 * 4 2 1 31 31 H 1.08995 * 109.47061 * 60.00101 * 4 2 1 32 32 H 1.09003 * 109.46651 * 180.02562 * 4 2 1 33 33 H 1.08002 * 119.99605 * 180.02562 * 5 2 1 34 34 H 1.08002 * 120.00632 * 0.02562 * 6 5 2 35 35 H 0.96999 * 120.00339 * 5.10135 * 9 7 6 36 36 H 1.08002 * 119.91807 * 0.02562 * 11 10 9 37 37 H 1.07999 * 120.08700 * 179.70602 * 12 11 10 38 38 H 0.96998 * 119.99451 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.08871 * 179.69613 * 22 13 12 40 40 H 1.07997 * 119.91287 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7106 1.2304 6 6 1.1678 -1.2158 2.1062 7 6 1.6579 -1.9087 3.3071 8 8 2.8537 -2.0194 3.4998 9 7 0.7820 -2.4210 4.1941 10 6 1.2420 -2.9821 5.3810 11 6 2.3652 -2.4469 6.0122 12 6 2.8252 -2.9951 7.1729 13 6 2.1565 -4.0976 7.7404 14 6 2.6232 -4.6670 8.9446 15 1 2.4115 -5.7016 9.1704 16 6 3.3601 -3.8909 9.8458 17 7 3.3447 -2.5857 9.7504 18 14 4.3660 -4.7176 11.1853 19 1 5.3804 -5.6071 10.5647 20 1 5.0483 -3.6822 12.0023 21 1 3.4684 -5.5208 12.0539 22 6 1.0233 -4.6329 7.0970 23 6 0.5782 -4.0776 5.9339 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1302 1.4424 0.0005 28 1 1.6768 1.9564 -0.8899 29 1 1.6768 1.9562 0.8901 30 1 1.6766 -1.7489 -1.2494 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7216 -1.2491 33 1 3.0942 -0.8089 1.4015 34 1 0.1059 -1.1172 1.9354 35 1 -0.1691 -2.3984 4.0050 36 1 2.8740 -1.5988 5.5784 37 1 3.6976 -2.5828 7.6580 38 1 3.8554 -2.0477 10.3755 39 1 0.5085 -5.4810 7.5237 40 1 -0.2902 -4.4871 5.4393 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264673228.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:12 Heat of formation + Delta-G solvation = -33.379058 kcal Electronic energy + Delta-G solvation = -19910.872938 eV Core-core repulsion = 16882.263223 eV Total energy + Delta-G solvation = -3028.609715 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.20603 -39.30483 -38.46320 -36.20358 -34.73038 -32.62496 -31.42557 -30.75412 -28.18754 -28.09072 -27.12504 -24.72470 -23.22765 -22.45109 -20.96078 -19.33933 -19.19805 -18.48499 -17.83640 -17.08055 -16.07755 -15.90468 -15.74737 -15.68066 -15.05181 -14.82635 -14.70828 -14.42284 -13.95309 -13.67356 -13.31139 -13.17048 -13.13072 -12.93861 -12.86709 -12.77314 -12.52950 -12.41568 -11.92681 -11.92157 -11.74212 -11.60006 -11.50194 -11.17767 -10.86799 -10.60798 -10.38391 -9.48078 -8.86324 -8.60823 -6.28647 0.32763 0.94674 1.12442 1.37449 1.49121 1.52403 2.19975 2.36157 2.43201 2.76841 3.63765 3.72861 3.86779 4.09673 4.14874 4.27641 4.41247 4.43371 4.46794 4.77824 4.80239 4.92389 4.95028 5.01404 5.04701 5.07297 5.14717 5.16464 5.23768 5.27860 5.32204 5.42930 5.43847 5.47681 5.57771 5.66474 5.87919 6.06500 6.09433 6.32171 6.65715 6.76445 6.90901 6.99152 7.43010 8.32406 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.039729 B = 0.003184 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.612887 B = 8791.476786 C = 9162.743093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.045 4.045 3 C -0.139 4.139 4 C -0.138 4.138 5 C -0.051 4.051 6 C -0.217 4.217 7 C 0.522 3.478 8 O -0.590 6.590 9 N -0.638 5.638 10 C 0.004 3.996 11 C -0.100 4.100 12 C -0.180 4.180 13 C 0.074 3.926 14 C -0.494 4.494 15 H 0.082 0.918 16 C 0.030 3.970 17 N -0.827 5.827 18 Si 0.985 3.015 19 H -0.262 1.262 20 H -0.269 1.269 21 H -0.254 1.254 22 C -0.224 4.224 23 C -0.099 4.099 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.102 0.898 34 H 0.165 0.835 35 H 0.418 0.582 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.288 0.712 39 H 0.112 0.888 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.870 5.771 -17.142 19.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.045 4.045 3 C -0.196 4.196 4 C -0.195 4.195 5 C -0.071 4.071 6 C -0.237 4.237 7 C 0.314 3.686 8 O -0.472 6.472 9 N -0.282 5.282 10 C -0.090 4.090 11 C -0.120 4.120 12 C -0.200 4.200 13 C 0.071 3.929 14 C -0.524 4.524 15 H 0.100 0.900 16 C -0.184 4.184 17 N -0.453 5.453 18 Si 0.806 3.194 19 H -0.187 1.187 20 H -0.193 1.193 21 H -0.178 1.178 22 C -0.244 4.244 23 C -0.119 4.119 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.182 0.818 35 H 0.255 0.745 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.130 0.870 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.999 5.940 -16.905 18.896 hybrid contribution 0.403 -0.196 0.950 1.051 sum -5.596 5.745 -15.955 17.857 Atomic orbital electron populations 1.22022 0.92659 1.02779 1.03059 1.19838 0.97122 0.95547 0.91982 1.21846 1.01186 0.93759 1.02802 1.21839 1.01176 1.00344 0.96123 1.23904 0.99286 0.90441 0.93442 1.22737 1.02559 1.04253 0.94161 1.19491 0.85746 0.79079 0.84322 1.90763 1.18086 1.60387 1.77967 1.42797 1.10502 1.58153 1.16737 1.17271 1.01528 0.99588 0.90592 1.20440 0.97408 0.99190 0.94995 1.20870 1.01683 1.01413 0.96039 1.18004 0.90400 0.91734 0.92762 1.19807 1.31196 0.98735 1.02630 0.90005 1.26855 0.95636 0.94958 1.00992 1.69909 1.33369 1.06929 1.35091 0.85207 0.78515 0.78777 0.76939 1.18694 1.19332 1.17798 1.20838 0.99139 1.04826 0.99565 1.20413 1.00575 0.94160 0.96711 0.91970 0.90578 0.91696 0.92759 0.90113 0.92850 0.92602 0.90153 0.92765 0.88045 0.81810 0.74462 0.89377 0.88540 0.90189 0.86981 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 7.13 71.98 0.51 -1.26 16 2 C -0.04 -0.70 0.99 -52.92 -0.05 -0.75 16 3 C -0.14 -1.96 8.46 71.98 0.61 -1.35 16 4 C -0.14 -1.87 8.46 71.98 0.61 -1.26 16 5 C -0.05 -1.18 8.33 24.52 0.20 -0.98 16 6 C -0.22 -5.44 9.00 23.42 0.21 -5.23 16 7 C 0.52 19.23 7.48 86.55 0.65 19.88 16 8 O -0.59 -27.88 13.93 -4.13 -0.06 -27.94 16 9 N -0.64 -22.76 5.30 -306.41 -1.62 -24.39 16 10 C 0.00 0.18 6.27 38.60 0.24 0.42 16 11 C -0.10 -5.37 8.57 22.14 0.19 -5.18 16 12 C -0.18 -10.41 8.63 22.48 0.19 -10.22 16 13 C 0.07 4.15 5.57 -21.27 -0.12 4.03 16 14 C -0.49 -27.42 9.04 23.39 0.21 -27.21 16 15 H 0.08 4.28 7.90 -2.91 -0.02 4.26 16 16 C 0.03 1.58 5.15 85.24 0.44 2.02 16 17 N -0.83 -45.34 10.95 21.82 0.24 -45.10 16 18 Si 0.99 39.41 29.59 68.60 2.03 41.44 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 20 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 21 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 22 C -0.22 -11.04 9.74 22.48 0.22 -10.82 16 23 C -0.10 -4.30 9.90 22.14 0.22 -4.08 16 24 H 0.06 0.76 7.50 -2.39 -0.02 0.74 16 25 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.75 7.50 -2.39 -0.02 0.73 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 2.88 7.49 -2.91 -0.02 2.86 16 34 H 0.16 2.85 5.75 -2.91 -0.02 2.83 16 35 H 0.42 10.85 8.80 -92.71 -0.82 10.04 16 36 H 0.09 4.84 6.46 -2.91 -0.02 4.82 16 37 H 0.10 5.89 6.18 -2.91 -0.02 5.87 16 38 H 0.29 14.31 8.30 -92.71 -0.77 13.54 16 39 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 40 H 0.14 4.62 8.06 -2.91 -0.02 4.60 16 Total: -1.00 -70.51 332.77 5.14 -65.36 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: 0.22 Total: 32.61 kcal Atomic # 6 Polarization: -46.31 SS G_CDS: 4.34 Total: -41.98 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: -1.38 Total: -69.49 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.06 Total: -27.94 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -70.51 5.14 -65.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264673228.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.984 kcal (2) G-P(sol) polarization free energy of solvation -70.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds