Wall clock time and date at job start Mon Mar 30 2020 02:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47361 * 2 1 4 4 N 1.46499 * 109.47136 * 180.02562 * 3 2 1 5 5 C 1.34777 * 120.00068 * 105.14390 * 4 3 2 6 6 O 1.21583 * 119.99655 * 178.18839 * 5 4 3 7 7 C 1.47639 * 119.99807 * 358.19283 * 5 4 3 8 8 C 1.40010 * 119.89508 * 155.10262 * 7 5 4 9 9 C 1.36323 * 120.10864 * 180.02562 * 8 7 5 10 10 C 1.40886 * 119.89121 * 0.26067 * 9 8 7 11 11 C 1.41100 * 120.10472 * 179.69715 * 10 9 8 12 12 H 1.08002 * 119.99967 * 33.95667 * 11 10 9 13 13 C 1.40230 * 120.00278 * 213.94851 * 11 10 9 14 14 N 1.30644 * 119.99656 * 5.76504 * 13 11 10 15 15 Si 1.86800 * 120.00122 * 185.76538 * 13 11 10 16 16 H 1.48501 * 109.47186 * 60.00145 * 15 13 11 17 17 H 1.48495 * 109.47343 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47220 * 300.00572 * 15 13 11 19 19 C 1.40891 * 119.79218 * 359.42176 * 10 9 8 20 20 C 1.36319 * 119.89060 * 0.60110 * 19 10 9 21 21 C 1.46498 * 119.99738 * 285.13984 * 4 3 2 22 22 C 1.53007 * 117.49861 * 196.82676 * 21 4 3 23 23 C 1.52998 * 60.00210 * 252.51422 * 22 21 4 24 24 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47156 * 299.99437 * 1 2 3 26 26 H 1.09002 * 109.47035 * 59.99765 * 1 2 3 27 27 H 1.09005 * 109.47152 * 240.00125 * 2 1 3 28 28 H 1.08995 * 109.47413 * 120.00380 * 2 1 3 29 29 H 1.08999 * 109.46527 * 60.00177 * 3 2 1 30 30 H 1.08995 * 109.47168 * 300.00530 * 3 2 1 31 31 H 1.07995 * 119.94607 * 0.02562 * 8 7 5 32 32 H 1.08001 * 120.05346 * 179.97438 * 9 8 7 33 33 H 0.97003 * 119.99483 * 179.97438 * 14 13 11 34 34 H 1.08000 * 120.05591 * 180.29335 * 19 10 9 35 35 H 1.07999 * 119.94992 * 179.68142 * 20 19 10 36 36 H 1.09003 * 115.55396 * 342.53785 * 21 4 3 37 37 H 1.09001 * 117.49232 * 0.02562 * 22 21 4 38 38 H 1.08997 * 117.50140 * 145.02234 * 22 21 4 39 39 H 1.09003 * 117.49914 * 252.50983 * 23 22 21 40 40 H 1.09004 * 117.52148 * 107.47748 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1784 1.7475 -1.1275 6 8 5.3938 1.7796 -1.1195 7 6 3.4403 2.0427 -2.3716 8 6 4.0305 2.8380 -3.3612 9 6 3.3526 3.1138 -4.5114 10 6 2.0539 2.6017 -4.7009 11 6 1.3457 2.8896 -5.8869 12 1 1.8767 2.9904 -6.8219 13 6 -0.0475 3.0446 -5.8515 14 7 -0.6770 3.0347 -4.7068 15 14 -1.0034 3.2652 -7.4412 16 1 -0.7963 2.0802 -8.3119 17 1 -2.4492 3.4076 -7.1338 18 1 -0.5244 4.4839 -8.1417 19 6 1.4668 1.7963 -3.7051 20 6 2.1522 1.5263 -2.5581 21 6 4.2379 1.1109 1.2237 22 6 5.7163 1.4999 1.2894 23 6 5.3181 0.0312 1.1300 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 5.0244 3.2337 -3.2132 32 1 3.8086 3.7277 -5.2740 33 1 -1.6407 3.1423 -4.6823 34 1 0.4733 1.3975 -3.8480 35 1 1.7010 0.9134 -1.7919 36 1 3.6610 1.1668 2.1469 37 1 6.1433 2.0029 0.4218 38 1 6.1121 1.8120 2.2558 39 1 5.4520 -0.6229 1.9916 40 1 5.4830 -0.4326 0.1575 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270264881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:30 Heat of formation + Delta-G solvation = 40.525421 kcal Electronic energy + Delta-G solvation = -21188.842548 eV Core-core repulsion = 18163.437572 eV Total energy + Delta-G solvation = -3025.404976 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.10275 -37.54411 -36.10887 -35.34875 -33.64323 -31.91320 -30.02919 -29.51500 -26.14372 -25.73066 -23.01704 -22.12729 -21.53092 -21.15491 -20.81679 -18.68958 -17.57138 -16.68473 -15.98527 -15.33768 -15.02247 -14.64585 -14.48299 -13.86906 -13.59515 -13.36738 -12.84475 -12.75546 -12.69566 -12.28687 -11.94763 -11.83427 -11.54822 -11.34254 -11.26513 -11.19858 -11.12188 -10.79978 -10.78506 -10.56439 -10.37249 -10.06623 -9.92562 -9.40306 -9.32582 -8.58211 -7.99164 -7.65803 -7.42940 -6.91674 -4.60820 2.20910 2.95624 2.96094 2.97585 2.99719 3.42403 3.69542 3.80522 4.24510 4.56185 5.03193 5.13383 5.14080 5.18745 5.38022 5.40020 5.49831 5.64694 5.79524 5.85616 5.88386 5.97339 6.01798 6.15576 6.20073 6.27505 6.28140 6.33541 6.50977 6.67756 6.77747 6.88538 7.00886 7.12262 7.21751 7.46065 7.58647 7.77526 7.86710 8.05833 8.10179 8.42058 8.66252 8.75057 8.99931 10.01289 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025366 B = 0.005109 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.559228 B = 5479.552296 C = 6397.572862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.144 4.144 3 C 0.079 3.921 4 N -0.589 5.589 5 C 0.574 3.426 6 O -0.562 6.562 7 C -0.272 4.272 8 C -0.030 4.030 9 C -0.229 4.229 10 C 0.130 3.870 11 C -0.453 4.453 12 H 0.081 0.919 13 C 0.073 3.927 14 N -0.791 5.791 15 Si 0.916 3.084 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.264 1.264 19 C -0.164 4.164 20 C -0.104 4.104 21 C 0.076 3.924 22 C -0.200 4.200 23 C -0.192 4.192 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.130 0.870 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.284 0.716 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.118 0.882 37 H 0.147 0.853 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.620 -3.696 8.223 9.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.183 4.183 3 C -0.044 4.044 4 N -0.319 5.319 5 C 0.371 3.629 6 O -0.444 6.444 7 C -0.276 4.276 8 C -0.049 4.049 9 C -0.249 4.249 10 C 0.127 3.873 11 C -0.482 4.482 12 H 0.100 0.900 13 C -0.145 4.145 14 N -0.416 5.416 15 Si 0.740 3.260 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.188 1.188 19 C -0.184 4.184 20 C -0.122 4.122 21 C -0.029 4.029 22 C -0.237 4.237 23 C -0.231 4.231 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.147 0.853 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.138 0.862 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.164 0.836 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.262 -3.635 8.332 9.094 hybrid contribution -0.630 0.077 -0.469 0.789 sum -0.892 -3.558 7.863 8.676 Atomic orbital electron populations 1.21738 0.95043 1.01793 1.02460 1.21985 0.96243 0.97509 1.02525 1.22617 0.79310 0.97163 1.05272 1.47176 1.06212 1.69466 1.09000 1.18752 0.86692 0.74436 0.83036 1.90409 1.14173 1.54937 1.84918 1.18955 0.97539 1.14746 0.96389 1.20338 0.97086 0.94835 0.92640 1.20827 0.98318 1.07364 0.98363 1.17827 0.90542 0.86416 0.92517 1.19726 0.91622 1.41335 0.95537 0.90046 1.25994 0.98116 0.92514 0.97911 1.69673 1.10810 1.34634 1.26438 0.86229 0.78154 0.80102 0.81507 1.18703 1.20151 1.18833 1.21061 1.00862 1.01548 0.94887 1.21606 0.93275 0.99418 0.97869 1.21486 0.89082 1.03876 0.88495 1.24068 0.96657 0.98275 1.04663 1.23190 1.04755 0.92476 1.02708 0.92674 0.92801 0.91618 0.90982 0.91940 0.91981 0.85262 0.88325 0.88313 0.90471 0.86167 0.85255 0.86387 0.83554 0.90224 0.89360 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.85 37.16 0.37 -1.44 16 2 C -0.14 -1.94 5.19 -26.73 -0.14 -2.08 16 3 C 0.08 1.20 4.91 -4.04 -0.02 1.18 16 4 N -0.59 -10.29 2.88 -167.28 -0.48 -10.77 16 5 C 0.57 12.14 7.28 -12.42 -0.09 12.05 16 6 O -0.56 -12.76 12.43 5.29 0.07 -12.69 16 7 C -0.27 -6.13 5.61 -104.73 -0.59 -6.72 16 8 C -0.03 -0.69 9.52 -39.61 -0.38 -1.07 16 9 C -0.23 -5.49 9.73 -39.27 -0.38 -5.88 16 10 C 0.13 3.27 5.51 -106.81 -0.59 2.69 16 11 C -0.45 -11.27 9.03 -37.75 -0.34 -11.61 16 12 H 0.08 1.94 7.86 -52.49 -0.41 1.53 16 13 C 0.07 1.71 5.31 -17.31 -0.09 1.62 16 14 N -0.79 -18.83 10.96 55.56 0.61 -18.22 16 15 Si 0.92 17.49 29.57 -169.99 -5.03 12.47 16 16 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 17 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 18 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 19 C -0.16 -3.93 8.56 -39.27 -0.34 -4.27 16 20 C -0.10 -2.24 7.41 -39.61 -0.29 -2.53 16 21 C 0.08 1.14 6.46 -67.92 -0.44 0.70 16 22 C -0.20 -3.10 9.64 -26.73 -0.26 -3.36 16 23 C -0.19 -2.85 9.89 -26.73 -0.26 -3.11 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 27 H 0.07 1.09 7.05 -51.93 -0.37 0.72 16 28 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.13 2.29 3.95 -53.29 -0.21 2.08 16 31 H 0.10 2.20 7.83 -52.49 -0.41 1.78 16 32 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 33 H 0.28 6.16 8.29 -40.82 -0.34 5.82 16 34 H 0.12 2.92 6.46 -52.49 -0.34 2.58 16 35 H 0.13 2.42 2.19 -52.49 -0.12 2.30 16 36 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.15 2.78 4.99 -53.24 -0.27 2.51 16 38 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.09 1.61 7.79 -51.93 -0.40 1.20 16 LS Contribution 320.37 15.07 4.83 4.83 Total: -1.00 -26.71 320.37 -9.30 -36.01 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -5.45 Total: 12.20 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -3.84 Total: -23.82 kcal Atomic # 7 Polarization: -29.12 SS G_CDS: 0.13 Total: -28.99 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.07 Total: -12.69 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.47 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.71 -9.30 -36.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270264881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.535 kcal (2) G-P(sol) polarization free energy of solvation -26.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds