Wall clock time and date at job start Mon Mar 30 2020 02:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47361 * 2 1 4 4 N 1.46499 * 109.47136 * 180.02562 * 3 2 1 5 5 C 1.34777 * 120.00068 * 105.14390 * 4 3 2 6 6 O 1.21583 * 119.99655 * 178.18839 * 5 4 3 7 7 C 1.47639 * 119.99807 * 358.19283 * 5 4 3 8 8 C 1.40010 * 119.89508 * 155.10262 * 7 5 4 9 9 C 1.36323 * 120.10864 * 180.02562 * 8 7 5 10 10 C 1.40886 * 119.89121 * 0.26067 * 9 8 7 11 11 C 1.41100 * 120.10472 * 179.69715 * 10 9 8 12 12 H 1.08002 * 119.99967 * 33.95667 * 11 10 9 13 13 C 1.40230 * 120.00278 * 213.94851 * 11 10 9 14 14 N 1.30644 * 119.99656 * 5.76504 * 13 11 10 15 15 Si 1.86800 * 120.00122 * 185.76538 * 13 11 10 16 16 H 1.48501 * 109.47186 * 60.00145 * 15 13 11 17 17 H 1.48495 * 109.47343 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47220 * 300.00572 * 15 13 11 19 19 C 1.40891 * 119.79218 * 359.42176 * 10 9 8 20 20 C 1.36319 * 119.89060 * 0.60110 * 19 10 9 21 21 C 1.46498 * 119.99738 * 285.13984 * 4 3 2 22 22 C 1.53007 * 117.49861 * 196.82676 * 21 4 3 23 23 C 1.52998 * 60.00210 * 252.51422 * 22 21 4 24 24 H 1.09001 * 109.47302 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47156 * 299.99437 * 1 2 3 26 26 H 1.09002 * 109.47035 * 59.99765 * 1 2 3 27 27 H 1.09005 * 109.47152 * 240.00125 * 2 1 3 28 28 H 1.08995 * 109.47413 * 120.00380 * 2 1 3 29 29 H 1.08999 * 109.46527 * 60.00177 * 3 2 1 30 30 H 1.08995 * 109.47168 * 300.00530 * 3 2 1 31 31 H 1.07995 * 119.94607 * 0.02562 * 8 7 5 32 32 H 1.08001 * 120.05346 * 179.97438 * 9 8 7 33 33 H 0.97003 * 119.99483 * 179.97438 * 14 13 11 34 34 H 1.08000 * 120.05591 * 180.29335 * 19 10 9 35 35 H 1.07999 * 119.94992 * 179.68142 * 20 19 10 36 36 H 1.09003 * 115.55396 * 342.53785 * 21 4 3 37 37 H 1.09001 * 117.49232 * 0.02562 * 22 21 4 38 38 H 1.08997 * 117.50140 * 145.02234 * 22 21 4 39 39 H 1.09003 * 117.49914 * 252.50983 * 23 22 21 40 40 H 1.09004 * 117.52148 * 107.47748 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1784 1.7475 -1.1275 6 8 5.3938 1.7796 -1.1195 7 6 3.4403 2.0427 -2.3716 8 6 4.0305 2.8380 -3.3612 9 6 3.3526 3.1138 -4.5114 10 6 2.0539 2.6017 -4.7009 11 6 1.3457 2.8896 -5.8869 12 1 1.8767 2.9904 -6.8219 13 6 -0.0475 3.0446 -5.8515 14 7 -0.6770 3.0347 -4.7068 15 14 -1.0034 3.2652 -7.4412 16 1 -0.7963 2.0802 -8.3119 17 1 -2.4492 3.4076 -7.1338 18 1 -0.5244 4.4839 -8.1417 19 6 1.4668 1.7963 -3.7051 20 6 2.1522 1.5263 -2.5581 21 6 4.2379 1.1109 1.2237 22 6 5.7163 1.4999 1.2894 23 6 5.3181 0.0312 1.1300 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 5.0244 3.2337 -3.2132 32 1 3.8086 3.7277 -5.2740 33 1 -1.6407 3.1423 -4.6823 34 1 0.4733 1.3975 -3.8480 35 1 1.7010 0.9134 -1.7919 36 1 3.6610 1.1668 2.1469 37 1 6.1433 2.0029 0.4218 38 1 6.1121 1.8120 2.2558 39 1 5.4520 -0.6229 1.9916 40 1 5.4830 -0.4326 0.1575 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270264881.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:29 Heat of formation + Delta-G solvation = 28.312784 kcal Electronic energy + Delta-G solvation = -21189.372127 eV Core-core repulsion = 18163.437572 eV Total energy + Delta-G solvation = -3025.934556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62568 -39.25278 -37.58267 -36.69990 -35.37357 -33.17948 -31.79476 -31.33765 -27.82920 -27.04297 -24.55182 -23.38066 -22.97637 -22.50186 -22.47847 -20.24333 -19.37537 -18.10230 -17.58548 -16.88663 -16.46800 -16.13672 -16.02352 -15.27793 -15.09760 -14.82916 -14.47443 -14.18309 -14.02035 -13.81734 -13.61840 -13.40594 -12.85752 -12.83505 -12.80060 -12.64848 -12.43125 -12.30954 -12.13784 -11.80956 -11.68838 -11.58641 -11.28454 -11.13006 -11.03739 -10.19364 -9.48866 -9.42630 -9.20867 -8.67530 -6.48740 0.44109 1.10183 1.40745 1.44350 1.51894 2.02314 2.06442 2.20302 2.76224 3.05253 3.61134 3.73601 3.93384 4.00743 4.07701 4.19290 4.27180 4.37290 4.40788 4.47435 4.57013 4.75947 4.77619 4.83202 4.93875 4.98103 5.04663 5.09658 5.17438 5.19527 5.23638 5.29900 5.43645 5.48316 5.62742 5.75383 5.91313 5.95081 6.01156 6.24847 6.51076 6.56698 6.81394 6.89494 7.38714 8.27769 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.025366 B = 0.005109 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.559228 B = 5479.552296 C = 6397.572862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.075 3.925 4 N -0.583 5.583 5 C 0.567 3.433 6 O -0.584 6.584 7 C -0.282 4.282 8 C -0.041 4.041 9 C -0.244 4.244 10 C 0.103 3.897 11 C -0.487 4.487 12 H 0.080 0.920 13 C 0.037 3.963 14 N -0.815 5.815 15 Si 0.987 3.013 16 H -0.260 1.260 17 H -0.264 1.264 18 H -0.262 1.262 19 C -0.182 4.182 20 C -0.090 4.090 21 C 0.071 3.929 22 C -0.208 4.208 23 C -0.184 4.184 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.293 0.707 34 H 0.113 0.887 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.124 0.876 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.908 -4.470 10.260 11.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C -0.046 4.046 4 N -0.312 5.312 5 C 0.362 3.638 6 O -0.469 6.469 7 C -0.286 4.286 8 C -0.060 4.060 9 C -0.264 4.264 10 C 0.100 3.900 11 C -0.516 4.516 12 H 0.098 0.902 13 C -0.179 4.179 14 N -0.439 5.439 15 Si 0.807 3.193 16 H -0.184 1.184 17 H -0.188 1.188 18 H -0.187 1.187 19 C -0.202 4.202 20 C -0.108 4.108 21 C -0.033 4.033 22 C -0.246 4.246 23 C -0.222 4.222 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.131 0.869 35 H 0.177 0.823 36 H 0.177 0.823 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.142 0.858 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.556 -4.419 10.402 11.408 hybrid contribution -0.161 0.311 -0.968 1.030 sum -1.717 -4.108 9.433 10.431 Atomic orbital electron populations 1.21719 0.93688 1.02780 1.02492 1.21914 0.97280 0.95838 1.02506 1.22688 0.77973 0.98601 1.05378 1.47209 1.07185 1.67965 1.08794 1.18599 0.86421 0.74993 0.83755 1.90442 1.14936 1.55997 1.85477 1.19303 0.97974 1.14140 0.97230 1.20489 0.97341 0.95290 0.92877 1.20957 0.98445 1.08006 0.98967 1.18167 0.91210 0.87148 0.93453 1.19971 0.92987 1.43141 0.95488 0.90163 1.26795 0.98296 0.91581 1.01272 1.69711 1.11576 1.34435 1.28225 0.85166 0.77044 0.79918 0.77126 1.18378 1.18830 1.18674 1.21064 1.00942 1.02373 0.95801 1.21919 0.92668 0.98635 0.97579 1.21943 0.89165 1.03730 0.88437 1.23927 0.97210 0.98773 1.04653 1.23185 1.04102 0.92401 1.02551 0.91268 0.90835 0.93527 0.93117 0.89771 0.88875 0.88068 0.88008 0.87809 0.89570 0.86928 0.82303 0.82307 0.87305 0.87166 0.85767 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.85 71.98 0.71 -2.43 16 2 C -0.14 -3.32 5.19 30.59 0.16 -3.16 16 3 C 0.08 2.13 4.91 86.38 0.42 2.56 16 4 N -0.58 -19.42 2.88 -801.42 -2.31 -21.72 16 5 C 0.57 24.13 7.28 86.73 0.63 24.76 16 6 O -0.58 -27.09 12.43 -3.98 -0.05 -27.14 16 7 C -0.28 -13.04 5.61 -19.93 -0.11 -13.15 16 8 C -0.04 -1.98 9.52 22.25 0.21 -1.76 16 9 C -0.24 -12.27 9.73 22.47 0.22 -12.05 16 10 C 0.10 5.41 5.51 -21.28 -0.12 5.30 16 11 C -0.49 -25.04 9.03 23.46 0.21 -24.83 16 12 H 0.08 3.98 7.86 -2.91 -0.02 3.95 16 13 C 0.04 1.75 5.31 85.35 0.45 2.20 16 14 N -0.81 -39.23 10.96 21.87 0.24 -38.99 16 15 Si 0.99 35.70 29.57 68.60 2.03 37.73 16 16 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 17 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 18 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 19 C -0.18 -9.04 8.56 22.47 0.19 -8.85 16 20 C -0.09 -3.99 7.41 22.25 0.16 -3.82 16 21 C 0.07 1.92 6.46 45.00 0.29 2.21 16 22 C -0.21 -6.07 9.64 30.60 0.29 -5.78 16 23 C -0.18 -4.97 9.89 30.60 0.30 -4.67 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 1.16 7.93 -2.39 -0.02 1.14 16 27 H 0.05 1.45 7.05 -2.38 -0.02 1.44 16 28 H 0.08 1.72 8.08 -2.39 -0.02 1.70 16 29 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.10 3.50 3.95 -3.66 -0.01 3.49 16 31 H 0.10 4.74 7.83 -2.91 -0.02 4.72 16 32 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 33 H 0.29 12.66 8.29 -92.71 -0.77 11.89 16 34 H 0.11 5.67 6.46 -2.91 -0.02 5.65 16 35 H 0.16 5.93 2.19 -2.91 -0.01 5.93 16 36 H 0.16 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.11 4.14 4.99 -23.10 -0.12 4.02 16 38 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.06 2.11 7.79 -2.38 -0.02 2.09 16 Total: -1.00 -60.36 320.37 4.88 -55.47 By element: Atomic # 1 Polarization: 37.18 SS G_CDS: 0.94 Total: 38.12 kcal Atomic # 6 Polarization: -47.50 SS G_CDS: 4.04 Total: -43.47 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -2.07 Total: -60.71 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.05 Total: -27.14 kcal Atomic # 14 Polarization: 35.70 SS G_CDS: 2.03 Total: 37.73 kcal Total: -60.36 4.88 -55.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270264881.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.784 kcal (2) G-P(sol) polarization free energy of solvation -60.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds