Wall clock time and date at job start Mon Mar 30 2020 02:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46625 * 2 1 4 4 N 1.46495 * 109.47199 * 120.00106 * 2 1 3 5 5 C 1.34776 * 120.00167 * 113.73370 * 4 2 1 6 6 O 1.21589 * 120.00416 * 174.62406 * 5 4 2 7 7 C 1.47640 * 119.99638 * 354.62780 * 5 4 2 8 8 C 1.40015 * 119.89825 * 150.11979 * 7 5 4 9 9 C 1.36311 * 120.11098 * 180.02562 * 8 7 5 10 10 C 1.40888 * 119.88994 * 0.25801 * 9 8 7 11 11 C 1.41111 * 120.10426 * 179.70356 * 10 9 8 12 12 H 1.07998 * 120.00153 * 31.86053 * 11 10 9 13 13 C 1.40228 * 119.99833 * 211.87087 * 11 10 9 14 14 N 1.30640 * 120.00278 * 7.44891 * 13 11 10 15 15 Si 1.86808 * 119.99771 * 187.45125 * 13 11 10 16 16 H 1.48506 * 109.46820 * 59.99575 * 15 13 11 17 17 H 1.48496 * 109.46890 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46906 * 300.00028 * 15 13 11 19 19 C 1.40888 * 119.79618 * 359.42240 * 10 9 8 20 20 C 1.36322 * 119.88721 * 0.59874 * 19 10 9 21 21 C 1.46498 * 120.00242 * 293.72884 * 4 2 1 22 22 C 1.52996 * 117.50384 * 197.63254 * 21 4 2 23 23 C 1.52998 * 60.00119 * 252.50900 * 22 21 4 24 24 H 1.09005 * 109.47007 * 299.99253 * 1 2 3 25 25 H 1.08993 * 109.47445 * 59.99583 * 1 2 3 26 26 H 1.08997 * 109.46651 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47236 * 240.00518 * 2 1 3 28 28 H 1.09005 * 109.46824 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47549 * 300.00353 * 3 2 1 30 30 H 1.09005 * 109.47330 * 60.00760 * 3 2 1 31 31 H 1.08004 * 119.94596 * 0.02562 * 8 7 5 32 32 H 1.08004 * 120.05381 * 179.97438 * 9 8 7 33 33 H 0.96996 * 120.00237 * 180.02562 * 14 13 11 34 34 H 1.07997 * 120.05835 * 180.29399 * 19 10 9 35 35 H 1.07993 * 119.94546 * 179.67576 * 20 19 10 36 36 H 1.09008 * 115.54993 * 343.34246 * 21 4 2 37 37 H 1.09008 * 117.49881 * 359.97438 * 22 21 4 38 38 H 1.08997 * 117.50554 * 145.02474 * 22 21 4 39 39 H 1.08995 * 117.50118 * 252.50565 * 23 22 21 40 40 H 1.09003 * 117.51692 * 107.47313 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.6859 -1.8553 1.0765 6 8 3.1760 -2.3789 2.0584 7 6 2.8223 -2.4954 -0.2469 8 6 3.9465 -3.2804 -0.5300 9 6 4.0771 -3.8730 -1.7507 10 6 3.0810 -3.6899 -2.7301 11 6 3.2145 -4.2961 -3.9973 12 1 3.7214 -5.2451 -4.0913 13 6 2.6893 -3.6662 -5.1347 14 7 2.2067 -2.4554 -5.0467 15 14 2.6795 -4.5585 -6.7759 16 1 1.8827 -5.8059 -6.6563 17 1 2.0751 -3.6828 -7.8117 18 1 4.0726 -4.8962 -7.1639 19 6 1.9482 -2.9047 -2.4384 20 6 1.8267 -2.3157 -1.2149 21 6 1.7813 -0.1152 2.5223 22 6 2.6404 -0.6290 3.6793 23 6 1.1654 -1.0248 3.5873 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 4.7116 -3.4168 0.2200 32 1 4.9449 -4.4780 -1.9682 33 1 1.8431 -2.0198 -5.8333 34 1 1.1798 -2.7654 -3.1844 35 1 0.9613 -1.7093 -0.9921 36 1 1.4977 0.9373 2.5343 37 1 3.3819 -1.3956 3.4539 38 1 2.9224 0.0853 4.4528 39 1 0.4770 -0.5709 4.3001 40 1 0.9363 -2.0514 3.3009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270300828.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:34 Heat of formation + Delta-G solvation = 33.341018 kcal Electronic energy + Delta-G solvation = -21301.306701 eV Core-core repulsion = 18275.590186 eV Total energy + Delta-G solvation = -3025.716515 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.13109 -37.52455 -36.22638 -35.27078 -33.67856 -30.73641 -30.00859 -29.50694 -27.06495 -25.96704 -23.04257 -22.17936 -21.97618 -20.85845 -20.72447 -18.47053 -17.52982 -16.66172 -15.72236 -15.39154 -14.80213 -14.51183 -14.30982 -13.88335 -13.48684 -13.35202 -13.13704 -12.72053 -12.62979 -12.17417 -11.99902 -11.85172 -11.68878 -11.42581 -11.28642 -11.24729 -11.17848 -10.87175 -10.77985 -10.61428 -10.31951 -10.05153 -9.94690 -9.43764 -9.37624 -8.54994 -7.99034 -7.66240 -7.44742 -6.93002 -4.60915 2.22955 2.95422 2.95707 2.97275 2.99288 3.41436 3.68189 3.79380 4.26752 4.55032 5.00027 5.13523 5.19284 5.27557 5.38822 5.43564 5.52648 5.69134 5.73497 5.88513 5.94397 5.96988 5.99440 6.06710 6.21769 6.24762 6.34689 6.39037 6.45089 6.69635 6.77649 6.87304 7.01214 7.12432 7.25836 7.45195 7.59385 7.79032 7.86035 8.06597 8.10754 8.41567 8.65718 8.74601 9.01125 9.99189 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.028801 B = 0.004936 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.968325 B = 5671.116252 C = 6301.807500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.105 3.895 3 C -0.159 4.159 4 N -0.583 5.583 5 C 0.576 3.424 6 O -0.561 6.561 7 C -0.273 4.273 8 C -0.030 4.030 9 C -0.230 4.230 10 C 0.129 3.871 11 C -0.451 4.451 12 H 0.082 0.918 13 C 0.073 3.927 14 N -0.788 5.788 15 Si 0.916 3.084 16 H -0.262 1.262 17 H -0.276 1.276 18 H -0.264 1.264 19 C -0.166 4.166 20 C -0.088 4.088 21 C 0.077 3.923 22 C -0.201 4.201 23 C -0.194 4.194 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.134 0.866 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.285 0.715 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.149 0.851 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.693 6.509 4.989 8.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.002 3.998 3 C -0.217 4.217 4 N -0.314 5.314 5 C 0.372 3.628 6 O -0.443 6.443 7 C -0.278 4.278 8 C -0.049 4.049 9 C -0.250 4.250 10 C 0.126 3.874 11 C -0.479 4.479 12 H 0.100 0.900 13 C -0.146 4.146 14 N -0.413 5.413 15 Si 0.740 3.260 16 H -0.187 1.187 17 H -0.201 1.201 18 H -0.188 1.188 19 C -0.185 4.185 20 C -0.107 4.107 21 C -0.028 4.028 22 C -0.238 4.238 23 C -0.233 4.233 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.151 0.849 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.140 0.860 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.166 0.834 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.550 6.449 5.315 9.080 hybrid contribution -0.164 -0.094 -0.764 0.787 sum -3.713 6.355 4.551 8.654 Atomic orbital electron populations 1.22216 0.95601 1.02442 1.01902 1.21977 0.94020 0.93622 0.90189 1.22146 1.01787 0.96080 1.01676 1.47279 1.56748 1.22589 1.04765 1.18760 0.75648 0.78901 0.89468 1.90396 1.50075 1.64522 1.39324 1.18946 1.02030 1.12556 0.94246 1.20310 0.95214 0.93810 0.95557 1.20794 1.00307 1.08426 0.95475 1.17808 0.89046 0.88633 0.91927 1.19745 1.30944 1.06013 0.91243 0.90009 1.26012 0.92435 0.94449 1.01686 1.69673 1.28176 1.11222 1.32224 0.86231 0.79811 0.80133 0.79840 1.18672 1.20134 1.18801 1.21061 0.99099 1.02872 0.95501 1.21088 0.97627 0.98179 0.93786 1.21416 1.05400 0.95842 0.80143 1.24132 0.96348 1.04972 0.98367 1.23193 0.96695 1.01098 1.02303 0.92614 0.91508 0.91895 0.84932 0.92247 0.91535 0.92988 0.88421 0.88332 0.90423 0.86026 0.86899 0.86351 0.83399 0.90340 0.89389 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 8.50 37.16 0.32 -1.85 16 2 C 0.10 1.62 2.38 -67.93 -0.16 1.45 16 3 C -0.16 -2.06 9.09 37.16 0.34 -1.73 16 4 N -0.58 -10.15 2.73 -159.76 -0.44 -10.58 16 5 C 0.58 12.15 7.17 -12.42 -0.09 12.06 16 6 O -0.56 -12.73 12.59 5.29 0.07 -12.67 16 7 C -0.27 -6.15 5.47 -104.73 -0.57 -6.73 16 8 C -0.03 -0.69 9.52 -39.61 -0.38 -1.07 16 9 C -0.23 -5.51 9.73 -39.27 -0.38 -5.89 16 10 C 0.13 3.25 5.53 -106.80 -0.59 2.65 16 11 C -0.45 -11.18 9.04 -37.75 -0.34 -11.52 16 12 H 0.08 1.94 7.86 -52.49 -0.41 1.53 16 13 C 0.07 1.70 5.29 -17.31 -0.09 1.61 16 14 N -0.79 -18.75 10.89 55.56 0.61 -18.14 16 15 Si 0.92 17.43 29.57 -169.99 -5.03 12.40 16 16 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 17 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 18 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 19 C -0.17 -3.99 8.58 -39.27 -0.34 -4.33 16 20 C -0.09 -1.93 7.30 -39.61 -0.29 -2.22 16 21 C 0.08 1.16 5.69 -67.93 -0.39 0.78 16 22 C -0.20 -3.14 9.64 -26.73 -0.26 -3.40 16 23 C -0.19 -2.89 9.90 -26.73 -0.26 -3.16 16 24 H 0.05 0.67 7.83 -51.93 -0.41 0.26 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.91 6.99 -51.93 -0.36 0.54 16 27 H 0.13 2.40 3.95 -51.93 -0.21 2.19 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.59 6.66 -51.93 -0.35 0.25 16 31 H 0.10 2.16 7.91 -52.48 -0.41 1.75 16 32 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 33 H 0.28 6.15 8.29 -40.82 -0.34 5.81 16 34 H 0.12 2.98 6.35 -52.49 -0.33 2.65 16 35 H 0.11 2.16 3.50 -52.49 -0.18 1.98 16 36 H 0.12 1.50 6.66 -51.92 -0.35 1.15 16 37 H 0.15 2.81 4.94 -53.47 -0.26 2.55 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.09 1.60 7.83 -51.93 -0.41 1.19 16 LS Contribution 317.47 15.07 4.78 4.78 Total: -1.00 -26.56 317.47 -8.85 -35.41 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -5.35 Total: 12.13 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -3.49 Total: -23.32 kcal Atomic # 7 Polarization: -28.89 SS G_CDS: 0.17 Total: -28.73 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.07 Total: -12.67 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.56 -8.85 -35.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270300828.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.747 kcal (2) G-P(sol) polarization free energy of solvation -26.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds