Wall clock time and date at job start Mon Mar 30 2020 02:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 H 1.09004 * 109.46982 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47092 * 119.99886 * 3 2 1 6 6 C 1.50702 * 109.47223 * 295.00184 * 5 3 2 7 7 O 1.21280 * 119.99766 * 359.97438 * 6 5 3 8 8 N 1.34778 * 119.99849 * 179.97438 * 6 5 3 9 9 C 1.46495 * 119.99937 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47311 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.47223 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00188 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00105 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99977 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00208 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47220 * 59.99938 * 15 13 11 17 17 H 1.48500 * 109.47380 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46951 * 300.00120 * 15 13 11 19 19 C 1.50701 * 109.47171 * 239.99998 * 3 2 1 20 20 C 1.38229 * 120.00208 * 299.72786 * 19 3 2 21 21 C 1.38227 * 120.00198 * 179.81014 * 20 19 3 22 22 C 1.38241 * 120.00120 * 0.39876 * 21 20 19 23 23 C 1.38229 * 119.99709 * 359.85188 * 22 21 20 24 24 C 1.38236 * 120.00089 * 359.95829 * 23 22 21 25 25 H 1.07999 * 120.00108 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99390 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00080 * 179.72973 * 2 1 3 28 28 H 1.09002 * 109.46670 * 55.00171 * 5 3 2 29 29 H 1.09004 * 109.47007 * 174.99965 * 5 3 2 30 30 H 0.97003 * 119.99907 * 0.02562 * 8 6 5 31 31 H 1.09000 * 109.47683 * 300.00454 * 9 8 6 32 32 H 1.09004 * 109.47169 * 60.00070 * 9 8 6 33 33 H 1.09002 * 109.47118 * 299.99810 * 10 9 8 34 34 H 1.08996 * 109.47139 * 59.99609 * 10 9 8 35 35 H 0.96996 * 120.00203 * 179.97438 * 14 13 11 36 36 H 1.08003 * 119.99682 * 359.97438 * 20 19 3 37 37 H 1.08003 * 120.00232 * 180.22779 * 21 20 19 38 38 H 1.07996 * 119.99907 * 179.83697 * 22 21 20 39 39 H 1.07997 * 120.00236 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00174 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0697 1.4300 2.4766 7 8 0.8626 1.3999 2.3632 8 7 2.6301 1.5027 3.7002 9 6 1.7811 1.5459 4.8933 10 6 2.6607 1.6268 6.1425 11 6 1.7874 1.6706 7.3699 12 1 0.7125 1.6430 7.2690 13 6 2.3606 1.7448 8.6216 14 7 3.6696 1.7779 8.7445 15 14 1.2781 1.7984 10.1430 16 1 0.4458 0.5699 10.2018 17 1 2.1318 1.8771 11.3555 18 1 0.3959 2.9914 10.0810 19 6 2.9299 1.3850 -1.2305 20 6 3.9128 0.4373 -1.4464 21 6 4.7049 0.5083 -2.5770 22 6 4.5196 1.5318 -3.4877 23 6 3.5402 2.4824 -3.2691 24 6 2.7454 2.4091 -2.1404 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8500 -0.9352 0.0044 28 1 3.5906 0.5105 1.2951 29 1 3.5540 2.2879 1.2056 30 1 3.5956 1.5272 3.7908 31 1 1.1342 2.4219 4.8475 32 1 1.1696 0.6446 4.9368 33 1 3.3079 0.7509 6.1886 34 1 3.2720 2.5282 6.0987 35 1 4.0729 1.8305 9.6251 36 1 4.0601 -0.3601 -0.7331 37 1 5.4704 -0.2342 -2.7476 38 1 5.1402 1.5887 -4.3696 39 1 3.3956 3.2822 -3.9803 40 1 1.9804 3.1521 -1.9694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273039234.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:57 Heat of formation + Delta-G solvation = -14.183651 kcal Electronic energy + Delta-G solvation = -19724.837934 eV Core-core repulsion = 16697.060595 eV Total energy + Delta-G solvation = -3027.777339 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.97912 -38.92453 -35.79913 -34.62816 -32.83644 -31.46113 -31.08304 -30.29096 -28.93224 -25.35283 -23.98563 -22.83932 -21.53056 -20.95361 -20.16108 -19.24815 -17.36154 -16.55305 -16.25469 -15.48669 -15.34124 -15.19277 -14.86939 -14.49895 -14.21009 -13.86389 -13.49621 -13.38310 -13.16242 -12.77832 -12.59423 -12.28156 -11.86121 -11.70130 -11.40208 -11.20029 -11.03979 -11.00940 -10.67733 -10.65482 -10.30313 -9.78998 -9.50830 -9.30750 -9.08528 -8.97567 -8.82995 -8.50773 -8.31479 -6.09200 -4.12103 1.17949 1.23420 2.50851 3.09652 3.31066 3.34836 3.37830 3.58822 3.78040 4.41616 4.59851 4.69711 4.82712 4.93645 4.95695 5.02202 5.18559 5.27668 5.32060 5.36637 5.42258 5.57296 5.68473 5.81862 5.82879 5.96679 6.05690 6.29743 6.33912 6.37080 6.37602 6.51284 6.74660 6.76021 6.85001 6.97140 6.98211 7.52466 7.62609 7.89135 8.07385 8.28764 8.72748 8.93930 9.52657 11.02393 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.035014 B = 0.002899 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.489265 B = 9657.475246 C =10084.466160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.151 4.151 3 C -0.002 4.002 4 H 0.089 0.911 5 C -0.132 4.132 6 C 0.504 3.496 7 O -0.543 6.543 8 N -0.725 5.725 9 C 0.123 3.877 10 C 0.013 3.987 11 C -0.522 4.522 12 H 0.058 0.942 13 C 0.059 3.941 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.068 4.068 20 C -0.113 4.113 21 C -0.119 4.119 22 C -0.128 4.128 23 C -0.120 4.120 24 C -0.115 4.115 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.396 0.604 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.263 0.737 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.523 -1.367 -23.403 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.169 4.169 3 C -0.021 4.021 4 H 0.107 0.893 5 C -0.172 4.172 6 C 0.289 3.711 7 O -0.421 6.421 8 N -0.376 5.376 9 C 0.001 3.999 10 C -0.025 4.025 11 C -0.561 4.561 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.068 4.068 20 C -0.131 4.131 21 C -0.137 4.137 22 C -0.146 4.146 23 C -0.138 4.138 24 C -0.133 4.133 25 H 0.115 0.885 26 H 0.110 0.890 27 H 0.121 0.879 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.230 0.770 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.784 -1.376 -23.318 23.427 hybrid contribution 0.083 0.003 1.031 1.034 sum 1.867 -1.373 -22.288 22.408 Atomic orbital electron populations 1.23693 0.95822 1.01445 0.98500 1.22532 0.95940 0.96502 1.01924 1.19064 0.95235 0.97796 0.90024 0.89285 1.21716 0.98600 1.04365 0.92509 1.20503 0.89094 0.76762 0.84743 1.90674 1.14755 1.49906 1.86771 1.46353 1.10781 1.73923 1.06502 1.21673 0.93927 1.00585 0.83761 1.19313 0.95165 0.97736 0.90246 1.21025 0.93174 1.51230 0.90659 0.92337 1.24998 0.95048 0.95002 0.99239 1.69946 1.09331 1.50227 1.23857 0.86572 0.80274 0.78785 0.81907 1.20107 1.21233 1.20109 1.19859 0.95994 0.94958 0.95976 1.21035 0.95554 0.98831 0.97675 1.21142 0.99530 0.98466 0.94611 1.21127 0.98615 0.95359 0.99501 1.21127 0.96056 0.99027 0.97544 1.21104 0.99734 0.98140 0.94367 0.88501 0.89032 0.87932 0.88990 0.88885 0.77032 0.92735 0.92723 0.96014 0.96000 0.92790 0.86034 0.86189 0.86362 0.86214 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 13.22 29.01 0.38 -1.64 16 2 C -0.15 -1.86 7.42 -36.03 -0.27 -2.13 16 3 C 0.00 -0.03 1.99 -92.92 -0.18 -0.21 16 4 H 0.09 1.13 7.33 -51.93 -0.38 0.75 16 5 C -0.13 -1.56 4.90 -27.88 -0.14 -1.69 16 6 C 0.50 8.22 7.58 -10.98 -0.08 8.14 16 7 O -0.54 -10.60 14.17 5.56 0.08 -10.52 16 8 N -0.73 -12.53 5.56 -60.30 -0.33 -12.87 16 9 C 0.12 2.63 5.61 -4.05 -0.02 2.60 16 10 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 11 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 12 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 15 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 C -0.07 -0.71 4.77 -104.62 -0.50 -1.21 16 20 C -0.11 -1.08 8.87 -39.59 -0.35 -1.43 16 21 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 22 C -0.13 -1.07 10.05 -39.58 -0.40 -1.47 16 23 C -0.12 -1.04 10.05 -39.59 -0.40 -1.44 16 24 C -0.12 -1.13 9.67 -39.58 -0.38 -1.52 16 25 H 0.10 1.29 7.83 -52.49 -0.41 0.88 16 26 H 0.09 1.06 8.06 -52.49 -0.42 0.64 16 27 H 0.10 1.16 8.06 -52.49 -0.42 0.73 16 28 H 0.09 0.94 7.55 -51.93 -0.39 0.54 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.40 5.93 8.47 -40.82 -0.35 5.59 16 31 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.12 1.03 7.62 -52.48 -0.40 0.63 16 37 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.12 1.06 7.95 -52.49 -0.42 0.65 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -31.60 341.50 -8.80 -40.40 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.12 Total: 3.49 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -3.29 Total: -16.59 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.40 Total: -38.37 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.60 -8.80 -40.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273039234.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.213 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds