Wall clock time and date at job start Mon Mar 30 2020 02:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 H 1.09004 * 109.46982 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47092 * 119.99886 * 3 2 1 6 6 C 1.50702 * 109.47223 * 295.00184 * 5 3 2 7 7 O 1.21280 * 119.99766 * 359.97438 * 6 5 3 8 8 N 1.34778 * 119.99849 * 179.97438 * 6 5 3 9 9 C 1.46495 * 119.99937 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47311 * 180.02562 * 9 8 6 11 11 C 1.50702 * 109.47223 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00188 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00105 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99977 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00208 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47220 * 59.99938 * 15 13 11 17 17 H 1.48500 * 109.47380 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46951 * 300.00120 * 15 13 11 19 19 C 1.50701 * 109.47171 * 239.99998 * 3 2 1 20 20 C 1.38229 * 120.00208 * 299.72786 * 19 3 2 21 21 C 1.38227 * 120.00198 * 179.81014 * 20 19 3 22 22 C 1.38241 * 120.00120 * 0.39876 * 21 20 19 23 23 C 1.38229 * 119.99709 * 359.85188 * 22 21 20 24 24 C 1.38236 * 120.00089 * 359.95829 * 23 22 21 25 25 H 1.07999 * 120.00108 * 0.02562 * 1 2 3 26 26 H 1.08000 * 119.99390 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.00080 * 179.72973 * 2 1 3 28 28 H 1.09002 * 109.46670 * 55.00171 * 5 3 2 29 29 H 1.09004 * 109.47007 * 174.99965 * 5 3 2 30 30 H 0.97003 * 119.99907 * 0.02562 * 8 6 5 31 31 H 1.09000 * 109.47683 * 300.00454 * 9 8 6 32 32 H 1.09004 * 109.47169 * 60.00070 * 9 8 6 33 33 H 1.09002 * 109.47118 * 299.99810 * 10 9 8 34 34 H 1.08996 * 109.47139 * 59.99609 * 10 9 8 35 35 H 0.96996 * 120.00203 * 179.97438 * 14 13 11 36 36 H 1.08003 * 119.99682 * 359.97438 * 20 19 3 37 37 H 1.08003 * 120.00232 * 180.22779 * 21 20 19 38 38 H 1.07996 * 119.99907 * 179.83697 * 22 21 20 39 39 H 1.07997 * 120.00236 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00174 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9431 1.3862 1.2492 6 6 2.0697 1.4300 2.4766 7 8 0.8626 1.3999 2.3632 8 7 2.6301 1.5027 3.7002 9 6 1.7811 1.5459 4.8933 10 6 2.6607 1.6268 6.1425 11 6 1.7874 1.6706 7.3699 12 1 0.7125 1.6430 7.2690 13 6 2.3606 1.7448 8.6216 14 7 3.6696 1.7779 8.7445 15 14 1.2781 1.7984 10.1430 16 1 0.4458 0.5699 10.2018 17 1 2.1318 1.8771 11.3555 18 1 0.3959 2.9914 10.0810 19 6 2.9299 1.3850 -1.2305 20 6 3.9128 0.4373 -1.4464 21 6 4.7049 0.5083 -2.5770 22 6 4.5196 1.5318 -3.4877 23 6 3.5402 2.4824 -3.2691 24 6 2.7454 2.4091 -2.1404 25 1 -0.5400 0.9353 -0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8500 -0.9352 0.0044 28 1 3.5906 0.5105 1.2951 29 1 3.5540 2.2879 1.2056 30 1 3.5956 1.5272 3.7908 31 1 1.1342 2.4219 4.8475 32 1 1.1696 0.6446 4.9368 33 1 3.3079 0.7509 6.1886 34 1 3.2720 2.5282 6.0987 35 1 4.0729 1.8305 9.6251 36 1 4.0601 -0.3601 -0.7331 37 1 5.4704 -0.2342 -2.7476 38 1 5.1402 1.5887 -4.3696 39 1 3.3956 3.2822 -3.9803 40 1 1.9804 3.1521 -1.9694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273039234.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:57 Heat of formation + Delta-G solvation = -31.783913 kcal Electronic energy + Delta-G solvation = -19725.601138 eV Core-core repulsion = 16697.060595 eV Total energy + Delta-G solvation = -3028.540544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.01664 -39.96448 -36.95363 -36.13766 -34.78478 -32.45490 -31.79746 -31.67184 -30.22331 -26.95967 -25.31746 -23.53649 -22.87151 -22.25269 -21.48369 -20.22979 -18.62846 -18.19729 -17.37119 -16.74019 -16.65681 -16.48135 -16.02669 -15.87011 -15.28913 -15.12905 -14.46770 -14.42139 -14.30721 -14.12958 -13.88307 -13.44699 -13.20965 -13.00483 -12.81646 -12.59155 -12.50270 -12.20859 -12.14194 -11.79820 -11.64403 -11.54272 -11.47102 -10.81247 -10.60429 -10.10990 -9.89793 -9.75313 -9.55505 -8.24651 -6.35297 0.48374 0.56719 1.41024 1.43270 1.51331 1.52943 1.78241 2.30774 2.48235 2.95532 3.09862 3.72489 3.78481 4.03997 4.13828 4.20905 4.28611 4.35338 4.39950 4.48036 4.52861 4.59532 4.68670 4.75973 4.78612 4.86946 4.98210 5.09716 5.16576 5.24471 5.33301 5.52444 5.58768 5.63727 5.69215 5.77258 5.78384 5.79959 6.01163 6.16457 6.18505 6.71536 6.78148 7.34056 7.38624 8.86987 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.035014 B = 0.002899 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.489265 B = 9657.475246 C =10084.466160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.152 4.152 3 C 0.003 3.997 4 H 0.072 0.928 5 C -0.120 4.120 6 C 0.502 3.498 7 O -0.576 6.576 8 N -0.723 5.723 9 C 0.143 3.857 10 C 0.023 3.977 11 C -0.549 4.549 12 H 0.057 0.943 13 C 0.007 3.993 14 N -0.927 5.927 15 Si 0.964 3.036 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.269 1.269 19 C -0.079 4.079 20 C -0.121 4.121 21 C -0.125 4.125 22 C -0.131 4.131 23 C -0.126 4.126 24 C -0.130 4.130 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.409 0.591 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.008 0.992 34 H 0.008 0.992 35 H 0.266 0.734 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.335 -1.668 -24.338 24.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.169 4.169 3 C -0.016 4.016 4 H 0.090 0.910 5 C -0.160 4.160 6 C 0.290 3.710 7 O -0.456 6.456 8 N -0.374 5.374 9 C 0.019 3.981 10 C -0.014 4.014 11 C -0.587 4.587 12 H 0.076 0.924 13 C -0.192 4.192 14 N -0.566 5.566 15 Si 0.789 3.211 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.194 1.194 19 C -0.079 4.079 20 C -0.139 4.139 21 C -0.143 4.143 22 C -0.149 4.149 23 C -0.144 4.144 24 C -0.149 4.149 25 H 0.103 0.897 26 H 0.119 0.881 27 H 0.134 0.866 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.245 0.755 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.149 0.851 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.613 -1.676 -24.278 24.476 hybrid contribution -0.139 0.103 1.242 1.254 sum 2.474 -1.574 -23.036 23.222 Atomic orbital electron populations 1.23763 0.96351 1.01387 0.99715 1.22774 0.95932 0.97422 1.00820 1.18961 0.95093 0.96831 0.90730 0.90982 1.21720 0.98039 1.06427 0.89791 1.21292 0.89184 0.75234 0.85308 1.90667 1.16567 1.51135 1.87213 1.46199 1.11100 1.74328 1.05784 1.21138 0.93374 0.99424 0.84161 1.19121 0.94844 0.96224 0.91226 1.21457 0.93623 1.51479 0.92165 0.92430 1.25872 0.96423 0.94405 1.02452 1.70049 1.10931 1.50821 1.24803 0.85512 0.78546 0.79125 0.77963 1.19337 1.20499 1.19363 1.19746 0.96544 0.95956 0.95688 1.21205 0.95444 0.98838 0.98407 1.21445 0.99689 0.98946 0.94187 1.21472 0.98449 0.94849 1.00115 1.21396 0.95825 0.99711 0.97439 1.21267 1.00309 0.98325 0.94950 0.89727 0.88125 0.86592 0.86551 0.86923 0.75525 0.93917 0.93884 0.97385 0.97413 0.92506 0.85055 0.84176 0.84169 0.84437 0.85903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.54 13.22 67.78 0.90 -3.65 16 2 C -0.15 -3.63 7.42 25.64 0.19 -3.44 16 3 C 0.00 0.06 1.99 -12.29 -0.02 0.04 16 4 H 0.07 1.86 7.33 -2.38 -0.02 1.84 16 5 C -0.12 -2.64 4.90 29.85 0.15 -2.49 16 6 C 0.50 16.07 7.58 87.66 0.66 16.73 16 7 O -0.58 -22.61 14.17 -3.03 -0.04 -22.65 16 8 N -0.72 -24.66 5.56 -463.07 -2.57 -27.23 16 9 C 0.14 6.19 5.61 86.38 0.48 6.68 16 10 C 0.02 1.18 5.09 29.85 0.15 1.33 16 11 C -0.55 -30.93 9.11 25.60 0.23 -30.70 16 12 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 13 C 0.01 0.41 5.46 84.65 0.46 0.87 16 14 N -0.93 -54.54 13.29 21.45 0.28 -54.25 16 15 Si 0.96 43.79 29.54 68.60 2.03 45.81 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 C -0.08 -1.54 4.77 -19.87 -0.09 -1.64 16 20 C -0.12 -2.05 8.87 22.26 0.20 -1.85 16 21 C -0.12 -1.83 10.05 22.27 0.22 -1.61 16 22 C -0.13 -1.85 10.05 22.27 0.22 -1.63 16 23 C -0.13 -1.96 10.05 22.27 0.22 -1.73 16 24 C -0.13 -2.42 9.67 22.27 0.22 -2.20 16 25 H 0.08 2.35 7.83 -2.91 -0.02 2.33 16 26 H 0.10 2.33 8.06 -2.91 -0.02 2.31 16 27 H 0.12 2.43 8.06 -2.91 -0.02 2.40 16 28 H 0.12 2.04 7.55 -2.39 -0.02 2.02 16 29 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.41 11.87 8.47 -92.71 -0.79 11.09 16 31 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.01 0.41 8.14 -2.39 -0.02 0.40 16 34 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.13 1.88 7.62 -2.91 -0.02 1.86 16 37 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 39 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.12 2.12 7.95 -2.91 -0.02 2.10 16 Total: -1.00 -67.57 341.50 4.11 -63.46 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.22 Total: 20.15 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 4.19 Total: -25.29 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -2.29 Total: -81.48 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.04 Total: -22.65 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -67.57 4.11 -63.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273039234.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.674 kcal (2) G-P(sol) polarization free energy of solvation -67.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds