Wall clock time and date at job start Mon Mar 30 2020 02:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47414 * 18.80485 * 3 2 1 5 5 O 1.42903 * 109.47203 * 179.97438 * 4 3 2 6 6 C 1.35899 * 116.99883 * 179.97438 * 5 4 3 7 7 C 1.38733 * 120.05512 * 179.97438 * 6 5 4 8 8 C 1.38148 * 119.94226 * 180.02562 * 7 6 5 9 9 C 1.38270 * 120.05515 * 0.02693 * 8 7 6 10 10 C 1.50707 * 119.93910 * 179.97438 * 9 8 7 11 11 N 1.46902 * 109.46656 * 90.00160 * 10 9 8 12 12 C 1.46906 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47332 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99871 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00534 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99727 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00639 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47022 * 89.99777 * 18 16 14 20 20 H 1.48497 * 109.47267 * 210.00472 * 18 16 14 21 21 H 1.48503 * 109.46510 * 330.00340 * 18 16 14 22 22 C 1.38264 * 120.11323 * 0.24765 * 9 8 7 23 23 C 1.38141 * 120.05663 * 359.45486 * 22 9 8 24 24 H 4.44646 * 5.63403 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.47286 * 258.80139 * 3 2 1 26 26 H 1.09005 * 109.47273 * 138.80688 * 3 2 1 27 27 H 1.09002 * 109.47077 * 60.00090 * 4 3 2 28 28 H 1.09005 * 109.46998 * 299.99778 * 4 3 2 29 29 H 1.07996 * 120.02849 * 0.02562 * 7 6 5 30 30 H 1.08000 * 119.97048 * 179.97438 * 8 7 6 31 31 H 1.08990 * 109.47142 * 330.00145 * 10 9 8 32 32 H 1.09004 * 109.46726 * 210.00043 * 10 9 8 33 33 H 1.00896 * 111.00219 * 303.95295 * 11 10 9 34 34 H 1.09002 * 109.46991 * 299.99841 * 12 11 10 35 35 H 1.09000 * 109.47202 * 60.00133 * 12 11 10 36 36 H 1.08995 * 109.47213 * 300.00679 * 13 12 11 37 37 H 1.09008 * 109.47264 * 60.00068 * 13 12 11 38 38 H 0.97001 * 120.00114 * 179.97438 * 17 16 14 39 39 H 1.07997 * 119.97123 * 179.70535 * 22 9 8 40 40 H 1.07995 * 120.03365 * 180.24888 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3646 -0.4650 5 8 4.5857 -1.3637 -0.4655 6 6 5.2032 -2.5098 -0.8554 7 6 6.5885 -2.5788 -0.8802 8 6 7.2138 -3.7448 -1.2775 9 6 6.4601 -4.8423 -1.6506 10 6 7.1450 -6.1129 -2.0841 11 7 7.3687 -6.9723 -0.9138 12 6 8.0355 -8.2233 -1.2992 13 6 8.2515 -9.0897 -0.0568 14 6 8.9350 -10.3732 -0.4521 15 1 9.1902 -10.5529 -1.4860 16 6 9.2355 -11.3178 0.5062 17 7 8.9252 -11.0988 1.7654 18 14 10.0834 -12.9086 0.0163 19 1 11.5555 -12.7276 0.0891 20 1 9.6716 -13.9944 0.9419 21 1 9.6969 -13.2682 -1.3717 22 6 5.0793 -4.7743 -1.6321 23 6 4.4492 -3.6126 -1.2299 24 1 -1.0498 -0.0004 -0.0003 25 1 3.0092 0.2004 1.0081 26 1 3.0090 0.7742 -0.6768 27 1 2.7934 -1.5643 -1.4731 28 1 2.7937 -2.1380 0.2119 29 1 7.1777 -1.7217 -0.5893 30 1 8.2923 -3.7989 -1.2974 31 1 8.1023 -5.8705 -2.5452 32 1 6.5168 -6.6366 -2.8047 33 1 7.8945 -6.4859 -0.2032 34 1 7.4131 -8.7614 -2.0141 35 1 8.9991 -7.9959 -1.7551 36 1 8.8739 -8.5513 0.6579 37 1 7.2881 -9.3171 0.3996 38 1 9.1363 -11.7635 2.4396 39 1 4.4928 -5.6313 -1.9286 40 1 3.3706 -3.5612 -1.2117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273097813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:56 Heat of formation + Delta-G solvation = 25.578163 kcal Electronic energy + Delta-G solvation = -18920.966069 eV Core-core repulsion = 15894.912931 eV Total energy + Delta-G solvation = -3026.053138 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 4.00 seconds Orbital eigenvalues (eV) -40.29174 -38.12217 -35.75553 -34.87191 -33.01601 -31.42071 -30.97375 -30.31631 -28.49186 -25.34182 -24.57928 -23.20117 -22.35853 -20.94951 -20.47318 -18.88723 -17.96538 -16.53980 -16.31173 -16.21218 -15.76528 -14.92101 -14.49011 -14.44020 -14.22164 -14.05051 -13.90140 -13.73437 -13.49657 -12.77260 -12.47475 -12.40251 -12.11274 -11.96521 -11.27659 -11.10719 -11.04811 -10.91926 -10.85260 -10.68665 -10.53957 -10.51027 -9.98339 -9.39293 -9.14971 -9.01076 -8.34321 -8.17539 -7.77093 -5.98455 -4.01167 1.32852 1.40433 2.19967 2.39015 3.00723 3.32793 3.38903 3.42292 3.72339 4.06172 4.45650 4.53526 4.54461 4.77703 4.83095 4.87953 4.92524 5.13005 5.23951 5.36135 5.37311 5.38217 5.40680 5.53301 5.61135 5.72846 5.89721 6.04074 6.23576 6.30361 6.37324 6.40455 6.71310 6.71694 6.98833 7.14370 7.26871 7.48558 7.74364 7.83642 7.96980 8.10025 8.44675 9.06198 9.62484 11.12928 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.035275 B = 0.002306 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.570299 B =12140.685190 C =12489.644490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.191 4.191 3 C -0.009 4.009 4 C 0.065 3.935 5 O -0.317 6.317 6 C 0.122 3.878 7 C -0.151 4.151 8 C -0.076 4.076 9 C -0.107 4.107 10 C 0.099 3.901 11 N -0.687 5.687 12 C 0.065 3.935 13 C 0.025 3.975 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.058 4.058 23 C -0.208 4.208 24 H 0.220 0.780 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.337 0.663 34 H 0.058 0.942 35 H 0.016 0.984 36 H 0.014 0.986 37 H 0.025 0.975 38 H 0.260 0.740 39 H 0.127 0.873 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.200 22.627 -6.038 26.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.191 4.191 3 C -0.046 4.046 4 C -0.010 4.010 5 O -0.232 6.232 6 C 0.077 3.923 7 C -0.169 4.169 8 C -0.095 4.095 9 C -0.108 4.108 10 C -0.030 4.030 11 N -0.318 5.318 12 C -0.063 4.063 13 C -0.013 4.013 14 C -0.560 4.560 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.077 4.077 23 C -0.227 4.227 24 H 0.237 0.763 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.155 0.845 34 H 0.077 0.923 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.145 0.855 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.730 22.433 -5.833 26.445 hybrid contribution 0.947 -0.753 -0.334 1.256 sum -11.783 21.679 -6.167 25.433 Atomic orbital electron populations 1.24971 0.95971 0.99371 1.00657 1.22631 0.93994 1.01582 1.00922 1.18439 0.84811 0.97148 1.04160 1.22622 0.78993 0.97719 1.01685 1.85965 1.20479 1.33938 1.82783 1.18914 0.92225 0.85117 0.96054 1.20345 0.91179 0.99461 1.05945 1.20899 0.99826 0.91791 0.96938 1.19858 0.93746 0.95407 1.01789 1.20838 0.98018 0.90383 0.93810 1.60646 1.54589 1.06306 1.10260 1.22186 0.94508 0.88991 1.00593 1.19071 0.97366 0.93232 0.91592 1.21177 1.38614 1.02262 0.93983 0.92743 1.25014 0.95965 0.98489 0.94978 1.69978 1.47415 1.35272 1.00559 0.86578 0.79722 0.83221 0.78367 1.20711 1.21200 1.19893 1.20855 0.94070 0.96569 0.96209 1.21216 0.99817 0.94208 1.07448 0.76314 0.88305 0.88397 0.91604 0.91441 0.85370 0.85490 0.95003 0.90670 0.84533 0.92301 0.96610 0.96794 0.95637 0.92994 0.85534 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.31 19.25 29.55 0.57 -0.74 16 2 C -0.19 -1.49 13.34 -37.12 -0.50 -1.99 16 3 C -0.01 -0.06 6.07 -29.52 -0.18 -0.24 16 4 C 0.07 0.54 4.70 37.16 0.17 0.71 16 5 O -0.32 -3.42 10.14 -19.42 -0.20 -3.62 16 6 C 0.12 1.46 6.69 -39.21 -0.26 1.20 16 7 C -0.15 -1.78 9.99 -39.43 -0.39 -2.17 16 8 C -0.08 -0.93 9.69 -39.60 -0.38 -1.31 16 9 C -0.11 -1.44 5.39 -104.60 -0.56 -2.01 16 10 C 0.10 1.45 5.81 -4.97 -0.03 1.42 16 11 N -0.69 -12.49 6.49 -115.05 -0.75 -13.23 16 12 C 0.07 1.38 5.62 -3.82 -0.02 1.36 16 13 C 0.02 0.66 5.23 -27.89 -0.15 0.51 16 14 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 18 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 C -0.06 -0.75 9.69 -39.61 -0.38 -1.13 16 23 C -0.21 -2.44 9.04 -39.43 -0.36 -2.80 16 24 H 0.22 0.75 7.80 -54.10 -0.42 0.33 16 25 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.50 7.66 -51.93 -0.40 0.11 16 28 H 0.07 0.55 7.66 -51.93 -0.40 0.15 16 29 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 33 H 0.34 6.02 8.72 -39.29 -0.34 5.67 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.12 1.21 6.30 -52.49 -0.33 0.88 16 LS Contribution 349.25 15.07 5.26 5.26 Total: -1.00 -31.93 349.25 -8.92 -40.86 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.08 Total: 1.28 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: -2.88 Total: -20.89 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: -0.01 Total: -39.67 kcal Atomic # 8 Polarization: -3.42 SS G_CDS: -0.20 Total: -3.62 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.93 -8.92 -40.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273097813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.435 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.00 seconds