Wall clock time and date at job start Mon Mar 30 2020 02:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47414 * 18.80485 * 3 2 1 5 5 O 1.42903 * 109.47203 * 179.97438 * 4 3 2 6 6 C 1.35899 * 116.99883 * 179.97438 * 5 4 3 7 7 C 1.38733 * 120.05512 * 179.97438 * 6 5 4 8 8 C 1.38148 * 119.94226 * 180.02562 * 7 6 5 9 9 C 1.38270 * 120.05515 * 0.02693 * 8 7 6 10 10 C 1.50707 * 119.93910 * 179.97438 * 9 8 7 11 11 N 1.46902 * 109.46656 * 90.00160 * 10 9 8 12 12 C 1.46906 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47332 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99871 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00534 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99727 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00639 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47022 * 89.99777 * 18 16 14 20 20 H 1.48497 * 109.47267 * 210.00472 * 18 16 14 21 21 H 1.48503 * 109.46510 * 330.00340 * 18 16 14 22 22 C 1.38264 * 120.11323 * 0.24765 * 9 8 7 23 23 C 1.38141 * 120.05663 * 359.45486 * 22 9 8 24 24 H 4.44646 * 5.63403 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.47286 * 258.80139 * 3 2 1 26 26 H 1.09005 * 109.47273 * 138.80688 * 3 2 1 27 27 H 1.09002 * 109.47077 * 60.00090 * 4 3 2 28 28 H 1.09005 * 109.46998 * 299.99778 * 4 3 2 29 29 H 1.07996 * 120.02849 * 0.02562 * 7 6 5 30 30 H 1.08000 * 119.97048 * 179.97438 * 8 7 6 31 31 H 1.08990 * 109.47142 * 330.00145 * 10 9 8 32 32 H 1.09004 * 109.46726 * 210.00043 * 10 9 8 33 33 H 1.00896 * 111.00219 * 303.95295 * 11 10 9 34 34 H 1.09002 * 109.46991 * 299.99841 * 12 11 10 35 35 H 1.09000 * 109.47202 * 60.00133 * 12 11 10 36 36 H 1.08995 * 109.47213 * 300.00679 * 13 12 11 37 37 H 1.09008 * 109.47264 * 60.00068 * 13 12 11 38 38 H 0.97001 * 120.00114 * 179.97438 * 17 16 14 39 39 H 1.07997 * 119.97123 * 179.70535 * 22 9 8 40 40 H 1.07995 * 120.03365 * 180.24888 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.3646 -0.4650 5 8 4.5857 -1.3637 -0.4655 6 6 5.2032 -2.5098 -0.8554 7 6 6.5885 -2.5788 -0.8802 8 6 7.2138 -3.7448 -1.2775 9 6 6.4601 -4.8423 -1.6506 10 6 7.1450 -6.1129 -2.0841 11 7 7.3687 -6.9723 -0.9138 12 6 8.0355 -8.2233 -1.2992 13 6 8.2515 -9.0897 -0.0568 14 6 8.9350 -10.3732 -0.4521 15 1 9.1902 -10.5529 -1.4860 16 6 9.2355 -11.3178 0.5062 17 7 8.9252 -11.0988 1.7654 18 14 10.0834 -12.9086 0.0163 19 1 11.5555 -12.7276 0.0891 20 1 9.6716 -13.9944 0.9419 21 1 9.6969 -13.2682 -1.3717 22 6 5.0793 -4.7743 -1.6321 23 6 4.4492 -3.6126 -1.2299 24 1 -1.0498 -0.0004 -0.0003 25 1 3.0092 0.2004 1.0081 26 1 3.0090 0.7742 -0.6768 27 1 2.7934 -1.5643 -1.4731 28 1 2.7937 -2.1380 0.2119 29 1 7.1777 -1.7217 -0.5893 30 1 8.2923 -3.7989 -1.2974 31 1 8.1023 -5.8705 -2.5452 32 1 6.5168 -6.6366 -2.8047 33 1 7.8945 -6.4859 -0.2032 34 1 7.4131 -8.7614 -2.0141 35 1 8.9991 -7.9959 -1.7551 36 1 8.8739 -8.5513 0.6579 37 1 7.2881 -9.3171 0.3996 38 1 9.1363 -11.7635 2.4396 39 1 4.4928 -5.6313 -1.9286 40 1 3.3706 -3.5612 -1.2117 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273097813.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:55 Heat of formation + Delta-G solvation = 7.025491 kcal Electronic energy + Delta-G solvation = -18921.770573 eV Core-core repulsion = 15894.912931 eV Total energy + Delta-G solvation = -3026.857642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.16349 -39.06843 -37.19029 -35.54789 -34.97639 -32.60908 -32.01378 -31.20220 -29.98390 -26.81500 -25.52034 -24.70126 -23.24273 -22.44640 -21.84416 -19.56292 -18.61148 -18.49890 -17.23784 -17.20600 -16.95776 -16.41233 -16.07199 -15.52650 -15.36211 -14.93190 -14.78859 -14.60592 -14.42431 -14.26215 -14.17126 -13.57230 -13.17551 -13.11562 -12.92800 -12.80027 -12.49309 -12.26951 -11.94638 -11.88125 -11.72598 -11.39749 -11.27608 -11.24555 -11.06456 -10.56083 -9.94080 -9.33457 -9.03413 -8.19687 -6.31442 0.39510 0.44000 1.40945 1.42745 1.53922 1.61252 1.85998 2.30519 2.41049 2.74860 3.13543 3.56793 3.57849 3.79907 3.93602 3.95499 3.98115 4.04931 4.27208 4.33465 4.43844 4.52354 4.56204 4.64817 4.76071 4.78862 4.81687 4.89314 5.07751 5.10461 5.12694 5.29840 5.39139 5.45231 5.67839 5.72197 5.78165 5.80933 6.13994 6.27669 6.41381 6.53064 6.63206 6.86150 7.37843 8.92431 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.035275 B = 0.002306 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.570299 B =12140.685190 C =12489.644490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.225 4.225 3 C -0.005 4.005 4 C 0.063 3.937 5 O -0.323 6.323 6 C 0.117 3.883 7 C -0.158 4.158 8 C -0.078 4.078 9 C -0.124 4.124 10 C 0.104 3.896 11 N -0.694 5.694 12 C 0.084 3.916 13 C 0.031 3.969 14 C -0.544 4.544 15 H 0.062 0.938 16 C -0.002 4.002 17 N -0.932 5.932 18 Si 0.969 3.031 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.262 1.262 22 C -0.069 4.069 23 C -0.211 4.211 24 H 0.247 0.753 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.338 0.662 34 H 0.060 0.940 35 H 0.022 0.978 36 H -0.009 1.009 37 H -0.007 1.007 38 H 0.264 0.736 39 H 0.130 0.870 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.426 23.093 -7.052 27.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.225 4.225 3 C -0.041 4.041 4 C -0.012 4.012 5 O -0.237 6.237 6 C 0.072 3.928 7 C -0.176 4.176 8 C -0.096 4.096 9 C -0.125 4.125 10 C -0.025 4.025 11 N -0.325 5.325 12 C -0.045 4.045 13 C -0.007 4.007 14 C -0.582 4.582 15 H 0.080 0.920 16 C -0.200 4.200 17 N -0.572 5.572 18 Si 0.793 3.207 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.187 1.187 22 C -0.087 4.087 23 C -0.230 4.230 24 H 0.263 0.737 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.162 0.838 30 H 0.158 0.842 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.155 0.845 34 H 0.078 0.922 35 H 0.040 0.960 36 H 0.009 0.991 37 H 0.011 0.989 38 H 0.072 0.928 39 H 0.148 0.852 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.965 22.923 -6.864 27.216 hybrid contribution 0.916 -0.789 0.017 1.210 sum -12.049 22.134 -6.847 26.115 Atomic orbital electron populations 1.25765 0.96884 0.98107 0.99521 1.23002 0.94694 1.02776 1.02048 1.18408 0.84642 0.96510 1.04579 1.22769 0.77664 0.98660 1.02138 1.85961 1.21859 1.33408 1.82494 1.19098 0.92570 0.85510 0.95598 1.20582 0.91489 0.99860 1.05689 1.21068 1.00546 0.91581 0.96432 1.19802 0.94116 0.95203 1.03344 1.20829 0.98785 0.90423 0.92431 1.60555 1.53987 1.06114 1.11885 1.21802 0.95186 0.89723 0.97801 1.18930 0.94888 0.93670 0.93199 1.21623 1.38834 1.03294 0.94495 0.91975 1.26014 0.96605 1.02513 0.94848 1.70118 1.48553 1.36740 1.01828 0.85391 0.78665 0.78195 0.78437 1.19691 1.20785 1.18656 1.21001 0.94072 0.97198 0.96462 1.21399 1.00812 0.93774 1.07002 0.73694 0.87909 0.87583 0.90984 0.91489 0.83815 0.84195 0.93895 0.90344 0.84459 0.92156 0.95970 0.99098 0.98877 0.92762 0.85175 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 19.25 74.32 1.43 -0.79 16 2 C -0.23 -3.26 13.34 31.13 0.42 -2.85 16 3 C 0.00 -0.06 6.07 28.79 0.17 0.11 16 4 C 0.06 0.96 4.70 71.98 0.34 1.30 16 5 O -0.32 -6.58 10.14 -92.42 -0.94 -7.52 16 6 C 0.12 2.68 6.69 22.51 0.15 2.83 16 7 C -0.16 -3.53 9.99 22.37 0.22 -3.30 16 8 C -0.08 -1.82 9.69 22.26 0.22 -1.60 16 9 C -0.12 -3.23 5.39 -19.85 -0.11 -3.34 16 10 C 0.10 2.95 5.81 85.56 0.50 3.45 16 11 N -0.69 -25.14 6.49 -517.91 -3.36 -28.50 16 12 C 0.08 3.54 5.62 86.30 0.49 4.03 16 13 C 0.03 1.66 5.23 29.85 0.16 1.82 16 14 C -0.54 -31.38 9.11 25.60 0.23 -31.15 16 15 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 16 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 17 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 18 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 21 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 22 C -0.07 -1.71 9.69 22.25 0.22 -1.49 16 23 C -0.21 -4.73 9.04 22.37 0.20 -4.53 16 24 H 0.25 1.11 7.80 -4.43 -0.03 1.07 16 25 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.07 1.01 7.66 -2.39 -0.02 0.99 16 28 H 0.07 1.03 7.66 -2.38 -0.02 1.01 16 29 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 30 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 31 H 0.04 1.14 8.08 -2.39 -0.02 1.12 16 32 H 0.08 2.17 8.08 -2.38 -0.02 2.15 16 33 H 0.34 12.10 8.72 -89.70 -0.78 11.32 16 34 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 36 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 38 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 40 H 0.14 2.56 6.30 -2.91 -0.02 2.54 16 Total: -1.00 -68.17 349.25 3.34 -64.83 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.23 Total: 17.12 kcal Atomic # 6 Polarization: -40.26 SS G_CDS: 5.09 Total: -35.17 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -3.08 Total: -85.85 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.94 Total: -7.52 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -68.17 3.34 -64.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273097813.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.856 kcal (2) G-P(sol) polarization free energy of solvation -68.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds