Wall clock time and date at job start Mon Mar 30 2020 01:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 119.99667 * 2 1 4 4 C 1.53006 * 109.47117 * 125.00144 * 3 2 1 5 5 C 1.52998 * 109.47126 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.47126 * 179.97438 * 5 4 3 7 7 N 1.46493 * 109.47138 * 179.97438 * 6 5 4 8 8 C 1.34776 * 119.99933 * 179.97438 * 7 6 5 9 9 O 1.21582 * 119.99748 * 0.02562 * 8 7 6 10 10 C 1.47649 * 120.00001 * 180.02562 * 8 7 6 11 11 C 1.40016 * 119.89637 * 0.24992 * 10 8 7 12 12 C 1.36306 * 120.10434 * 180.25839 * 11 10 8 13 13 C 1.40885 * 119.89590 * 359.47343 * 12 11 10 14 14 C 1.41111 * 120.10921 * 180.30311 * 13 12 11 15 15 H 1.07994 * 120.00597 * 154.53119 * 14 13 12 16 16 C 1.40227 * 119.99382 * 334.52933 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.05813 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.06034 * 16 14 13 19 19 H 1.48501 * 109.47101 * 89.99684 * 18 16 14 20 20 H 1.48501 * 109.47179 * 209.99729 * 18 16 14 21 21 H 1.48501 * 109.46949 * 330.00066 * 18 16 14 22 22 C 1.40889 * 119.79071 * 0.27404 * 13 12 11 23 23 C 1.36316 * 119.89281 * 0.02562 * 22 13 12 24 24 H 1.08003 * 119.99397 * 179.97438 * 1 2 3 25 25 H 1.07997 * 120.00428 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.00017 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47591 * 5.00054 * 3 2 1 28 28 H 1.09003 * 109.47100 * 244.99827 * 3 2 1 29 29 H 1.09004 * 109.46887 * 59.99918 * 4 3 2 30 30 H 1.09003 * 109.46877 * 299.99820 * 4 3 2 31 31 H 1.08997 * 109.47561 * 59.99923 * 5 4 3 32 32 H 1.09003 * 109.47121 * 299.99701 * 5 4 3 33 33 H 1.08997 * 109.46964 * 59.99557 * 6 5 4 34 34 H 1.09002 * 109.46546 * 300.00282 * 6 5 4 35 35 H 0.97004 * 120.00572 * 0.02562 * 7 6 5 36 36 H 1.08002 * 119.94001 * 0.03091 * 11 10 8 37 37 H 1.08006 * 120.05292 * 179.74851 * 12 11 10 38 38 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.05483 * 180.02562 * 22 13 12 40 40 H 1.08000 * 119.94946 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8004 2.6579 1.1813 6 6 4.7715 2.6862 2.3633 7 7 5.5048 3.9544 2.3626 8 6 6.4209 4.2036 3.3192 9 8 6.6391 3.3756 4.1824 10 6 7.1596 5.4820 3.3188 11 6 6.9028 6.4361 2.3267 12 6 7.5860 7.6155 2.3193 13 6 8.5439 7.8785 3.3184 14 6 9.2492 9.1007 3.3186 15 1 9.6524 9.4914 4.2412 16 6 9.4264 9.8081 2.1209 17 7 9.2450 9.2078 0.9748 18 14 9.9220 11.6086 2.1641 19 1 11.4032 11.7147 2.1563 20 1 9.3697 12.3028 0.9732 21 1 9.3871 12.2397 3.3974 22 6 8.7950 6.9176 4.3176 23 6 8.1111 5.7384 4.3134 24 1 -0.5399 -0.9354 -0.0004 25 1 -0.5401 0.9352 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4026 -0.9314 29 1 3.7400 0.5066 1.0920 30 1 2.4772 1.2356 2.1130 31 1 3.0958 3.4847 1.2706 32 1 4.3582 2.7549 0.2499 33 1 5.4762 1.8594 2.2744 34 1 4.2133 2.5892 3.2945 35 1 5.3305 4.6151 1.6741 36 1 6.1649 6.2355 1.5641 37 1 7.3902 8.3492 1.5512 38 1 9.3673 9.6973 0.1462 39 1 9.5280 7.1150 5.0858 40 1 8.3032 5.0010 5.0787 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274499482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:51 Heat of formation + Delta-G solvation = -29.610586 kcal Electronic energy + Delta-G solvation = -19314.631752 eV Core-core repulsion = 16286.185450 eV Total energy + Delta-G solvation = -3028.446301 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.09753 -37.26434 -36.63047 -34.64174 -33.85988 -32.29323 -30.23786 -29.44384 -28.13151 -25.86691 -23.65674 -21.72043 -21.43397 -20.85376 -19.99464 -19.46407 -17.52503 -16.76665 -16.09944 -15.63687 -15.34107 -15.12074 -14.31298 -14.03692 -13.87305 -13.73211 -13.22208 -13.07325 -12.74884 -12.51966 -12.13528 -12.08843 -11.88654 -11.56004 -11.38614 -11.26011 -11.23508 -11.01649 -10.98100 -10.76270 -10.61980 -10.05694 -9.60242 -9.55800 -9.35244 -8.94797 -8.56479 -7.71828 -7.53063 -7.02805 -4.60141 2.00619 2.24041 2.90774 2.94371 3.00542 3.03675 3.73992 3.81378 3.88799 4.55253 4.57811 4.73970 4.81128 4.95591 5.22285 5.26232 5.40068 5.56906 5.58189 5.62949 5.66621 5.78030 5.87861 6.04283 6.06726 6.14623 6.26146 6.32423 6.35656 6.49998 6.77056 6.83077 6.95946 7.07347 7.13775 7.44029 7.65773 7.79477 7.86146 8.07497 8.26457 8.40104 8.63355 8.75491 9.09996 9.89351 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.029270 B = 0.002797 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.383921 B =10006.604677 C =10825.089966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.096 4.096 4 C -0.111 4.111 5 C -0.132 4.132 6 C 0.123 3.877 7 N -0.743 5.743 8 C 0.570 3.430 9 O -0.577 6.577 10 C -0.283 4.283 11 C -0.063 4.063 12 C -0.177 4.177 13 C 0.128 3.872 14 C -0.443 4.443 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.774 5.774 18 Si 0.913 3.087 19 H -0.267 1.267 20 H -0.273 1.273 21 H -0.258 1.258 22 C -0.238 4.238 23 C -0.023 4.023 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.397 0.603 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.286 0.714 39 H 0.098 0.902 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.092 -7.933 -5.086 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.169 4.169 3 C -0.133 4.133 4 C -0.149 4.149 5 C -0.170 4.170 6 C -0.001 4.001 7 N -0.396 5.396 8 C 0.365 3.635 9 O -0.459 6.459 10 C -0.288 4.288 11 C -0.082 4.082 12 C -0.197 4.197 13 C 0.125 3.875 14 C -0.471 4.471 15 H 0.103 0.897 16 C -0.147 4.147 17 N -0.397 5.397 18 Si 0.737 3.263 19 H -0.192 1.192 20 H -0.198 1.198 21 H -0.181 1.181 22 C -0.258 4.258 23 C -0.042 4.042 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.926 -8.495 -4.742 14.629 hybrid contribution 0.143 1.022 -0.552 1.170 sum -10.783 -7.473 -5.295 14.147 Atomic orbital electron populations 1.23854 0.96022 1.01759 1.02009 1.23011 0.96046 0.98682 0.99160 1.20794 0.98251 0.95258 0.99005 1.21442 0.97762 0.97344 0.98386 1.21820 0.98261 0.98258 0.98657 1.21177 0.93925 0.87048 0.97939 1.45920 1.42320 1.19463 1.31943 1.18599 0.78053 0.87089 0.79766 1.90627 1.67616 1.49070 1.38587 1.18921 1.09253 0.96147 1.04462 1.20475 0.97785 0.94334 0.95653 1.20970 0.98683 0.97580 1.02422 1.17794 0.88597 0.91236 0.89886 1.19828 1.28973 1.03445 0.94829 0.89742 1.26097 0.93055 1.00739 0.94831 1.69741 1.33175 1.37817 0.98963 0.86219 0.79625 0.81143 0.79347 1.19172 1.19814 1.18139 1.20726 1.05504 0.95310 1.04216 1.20373 0.92888 0.95759 0.95209 0.88682 0.88632 0.87445 0.91441 0.90875 0.91517 0.91562 0.91328 0.91253 0.92194 0.92206 0.76805 0.89327 0.86202 0.90266 0.88370 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.47 14.32 29.01 0.42 -1.06 16 2 C -0.15 -1.18 9.52 -36.03 -0.34 -1.52 16 3 C -0.10 -0.76 5.66 -27.88 -0.16 -0.91 16 4 C -0.11 -0.97 5.20 -26.73 -0.14 -1.11 16 5 C -0.13 -1.34 5.33 -26.73 -0.14 -1.48 16 6 C 0.12 1.72 5.67 -4.04 -0.02 1.70 16 7 N -0.74 -12.59 5.50 -61.31 -0.34 -12.92 16 8 C 0.57 12.38 7.76 -12.42 -0.10 12.29 16 9 O -0.58 -14.07 16.32 5.29 0.09 -13.98 16 10 C -0.28 -6.55 5.89 -104.73 -0.62 -7.17 16 11 C -0.06 -1.41 9.47 -39.61 -0.38 -1.78 16 12 C -0.18 -4.35 8.63 -39.28 -0.34 -4.69 16 13 C 0.13 3.28 5.57 -106.80 -0.59 2.68 16 14 C -0.44 -11.04 9.05 -37.75 -0.34 -11.38 16 15 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 16 C 0.07 1.72 5.15 -17.31 -0.09 1.63 16 17 N -0.77 -18.54 10.95 55.56 0.61 -17.93 16 18 Si 0.91 17.25 29.59 -169.99 -5.03 12.22 16 19 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 20 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 21 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 22 C -0.24 -5.81 9.73 -39.27 -0.38 -6.19 16 23 C -0.02 -0.55 9.52 -39.61 -0.38 -0.93 16 24 H 0.09 0.60 8.06 -52.48 -0.42 0.18 16 25 H 0.10 0.66 7.84 -52.49 -0.41 0.25 16 26 H 0.11 0.77 8.06 -52.49 -0.42 0.34 16 27 H 0.07 0.52 7.79 -51.93 -0.40 0.12 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.40 5.95 6.47 -40.82 -0.26 5.68 16 36 H 0.09 1.66 6.37 -52.49 -0.33 1.32 16 37 H 0.12 2.97 6.18 -52.48 -0.32 2.64 16 38 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 39 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 LS Contribution 339.81 15.07 5.12 5.12 Total: -1.00 -28.46 339.81 -9.07 -37.53 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -5.92 Total: 9.87 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -3.60 Total: -19.92 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.27 Total: -30.85 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.98 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.46 -9.07 -37.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274499482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.921 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds