Wall clock time and date at job start Mon Mar 30 2020 01:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 120.00153 * 2 1 4 4 C 1.52996 * 109.47252 * 125.00773 * 3 2 1 5 5 C 1.53001 * 109.47247 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46877 * 180.02562 * 5 4 3 7 7 N 1.46507 * 109.46879 * 179.97438 * 6 5 4 8 8 C 1.34771 * 119.99873 * 179.97438 * 7 6 5 9 9 O 1.21551 * 120.00219 * 0.02562 * 8 7 6 10 10 C 1.47892 * 120.00019 * 179.97438 * 8 7 6 11 11 C 1.39921 * 120.02340 * 359.97438 * 10 8 7 12 12 C 1.38327 * 120.35760 * 180.02562 * 11 10 8 13 13 C 1.37745 * 120.41334 * 359.97438 * 12 11 10 14 14 C 1.40744 * 120.03985 * 359.97438 * 13 12 11 15 15 C 1.41440 * 120.17902 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99720 * 24.39575 * 15 14 13 17 17 C 1.39937 * 120.00148 * 204.39015 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.85017 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.84477 * 17 15 14 20 20 H 1.48498 * 109.46884 * 90.00045 * 19 17 15 21 21 H 1.48493 * 109.47017 * 210.00108 * 19 17 15 22 22 H 1.48500 * 109.46917 * 330.00618 * 19 17 15 23 23 C 1.38995 * 120.02504 * 180.02562 * 10 8 7 24 24 H 1.07993 * 120.00031 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.99815 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99711 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.46992 * 5.00244 * 3 2 1 28 28 H 1.09007 * 109.46835 * 245.00543 * 3 2 1 29 29 H 1.09002 * 109.47554 * 59.99815 * 4 3 2 30 30 H 1.09007 * 109.46534 * 300.00265 * 4 3 2 31 31 H 1.08996 * 109.46970 * 59.99437 * 5 4 3 32 32 H 1.09007 * 109.46474 * 299.99546 * 5 4 3 33 33 H 1.08996 * 109.47811 * 59.99914 * 6 5 4 34 34 H 1.09007 * 109.47166 * 299.99084 * 6 5 4 35 35 H 0.96996 * 119.99664 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.81943 * 359.97438 * 11 10 8 37 37 H 1.08002 * 119.78825 * 180.02562 * 12 11 10 38 38 H 1.08000 * 119.98151 * 180.02562 * 13 12 11 39 39 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 40 40 H 1.07999 * 120.20287 * 359.70584 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0352 1.3330 1.1815 5 6 3.7998 2.6582 1.1818 6 6 4.7719 2.6858 2.3630 7 7 5.5044 3.9546 2.3630 8 6 6.4212 4.2033 3.3190 9 8 6.6407 3.3748 4.1809 10 6 7.1611 5.4838 3.3187 11 6 6.9101 6.4372 2.3258 12 6 7.5985 7.6370 2.3186 13 6 8.5384 7.9074 3.2885 14 6 8.8037 6.9611 4.2960 15 6 9.7678 7.2359 5.2937 16 1 10.0137 8.2583 5.5399 17 6 10.4031 6.1832 5.9618 18 7 10.3838 4.9785 5.4521 19 14 11.2786 6.4980 7.5817 20 1 10.3259 6.3069 8.7046 21 1 12.4104 5.5475 7.7254 22 1 11.7954 7.8900 7.6026 23 6 8.1072 5.7407 4.3041 24 1 -0.5400 0.9352 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6212 1.4026 -0.9315 29 1 3.7401 0.5064 1.0919 30 1 2.4774 1.2354 2.1129 31 1 3.0946 3.4845 1.2717 32 1 4.3575 2.7561 0.2504 33 1 5.4770 1.8596 2.2727 34 1 4.2145 2.5877 3.2947 35 1 5.3295 4.6155 1.6749 36 1 6.1755 6.2349 1.5604 37 1 7.3972 8.3665 1.5481 38 1 9.0716 8.8466 3.2765 39 1 10.8238 4.2487 5.9153 40 1 8.3013 5.0093 5.0746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274507623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:54 Heat of formation + Delta-G solvation = -25.538942 kcal Electronic energy + Delta-G solvation = -19499.914201 eV Core-core repulsion = 16471.644459 eV Total energy + Delta-G solvation = -3028.269742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.19250 -37.19270 -36.62544 -34.69502 -33.73345 -32.30513 -30.21322 -29.42965 -28.03075 -25.32905 -24.00754 -21.97429 -21.44801 -20.88408 -20.01030 -19.38676 -17.68554 -16.25391 -16.08328 -15.51220 -15.26905 -15.00273 -14.62301 -14.32003 -13.83415 -13.70732 -13.21998 -13.09599 -12.69955 -12.54291 -12.41851 -12.13604 -11.65905 -11.56358 -11.28970 -11.16689 -11.08559 -11.03643 -10.78362 -10.70926 -10.48889 -10.00944 -9.68611 -9.61356 -9.21399 -8.99112 -8.62612 -7.62205 -7.51678 -6.79520 -4.40951 1.99538 2.22607 2.82098 3.08146 3.11408 3.16313 3.70921 3.88941 3.92790 4.53114 4.64721 4.72031 4.78360 4.93957 5.19766 5.23823 5.36897 5.55593 5.60074 5.61334 5.64386 5.73937 5.76090 5.98116 6.08201 6.11777 6.19593 6.28197 6.34571 6.48778 6.72655 6.89611 6.99696 7.03077 7.22039 7.38927 7.71008 7.77055 7.93617 8.11540 8.20460 8.51445 8.80790 8.84194 8.98136 10.15154 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.032082 B = 0.002982 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.544757 B = 9386.856065 C =10124.226656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.095 4.095 4 C -0.112 4.112 5 C -0.131 4.131 6 C 0.121 3.879 7 N -0.738 5.738 8 C 0.562 3.438 9 O -0.547 6.547 10 C -0.128 4.128 11 C -0.219 4.219 12 C -0.098 4.098 13 C -0.212 4.212 14 C 0.098 3.902 15 C -0.460 4.460 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.783 5.783 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.093 4.093 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.285 0.715 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.707 -5.687 -8.555 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.169 4.169 3 C -0.133 4.133 4 C -0.150 4.150 5 C -0.169 4.169 6 C -0.003 4.003 7 N -0.392 5.392 8 C 0.353 3.647 9 O -0.425 6.425 10 C -0.131 4.131 11 C -0.239 4.239 12 C -0.116 4.116 13 C -0.232 4.232 14 C 0.095 3.905 15 C -0.488 4.488 16 H 0.100 0.900 17 C -0.147 4.147 18 N -0.407 5.407 19 Si 0.735 3.265 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.113 4.113 24 H 0.114 0.886 25 H 0.113 0.887 26 H 0.126 0.874 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.234 0.766 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.448 -6.548 -7.889 16.126 hybrid contribution 0.311 0.302 0.242 0.496 sum -12.136 -6.246 -7.647 15.645 Atomic orbital electron populations 1.23851 0.96021 1.01764 1.01989 1.23011 0.96051 0.98691 0.99174 1.20790 0.98228 0.95267 0.98974 1.21446 0.97800 0.97323 0.98434 1.21812 0.98205 0.98315 0.98569 1.21236 0.94038 0.86904 0.98157 1.45960 1.41944 1.19550 1.31773 1.18857 0.78301 0.87423 0.80132 1.90693 1.65973 1.48219 1.37654 1.19488 1.00658 0.93161 0.99823 1.20339 1.05867 0.96206 1.01455 1.20433 0.97159 0.95935 0.98101 1.21091 1.03472 1.01186 0.97476 1.17613 0.90992 0.90883 0.90982 1.19597 1.18626 0.94156 1.16471 0.90049 1.25976 0.95555 0.94511 0.98615 1.69791 1.33291 1.01443 1.36193 0.86263 0.79048 0.79410 0.81755 1.19139 1.20224 1.18574 1.21649 0.93237 0.98644 0.97759 0.88641 0.88671 0.87427 0.91456 0.90893 0.91450 0.91517 0.91303 0.91252 0.91934 0.91977 0.76624 0.89250 0.88906 0.88616 0.90427 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.44 14.32 29.01 0.42 -1.03 16 2 C -0.15 -1.16 9.52 -36.03 -0.34 -1.50 16 3 C -0.10 -0.73 5.66 -27.89 -0.16 -0.89 16 4 C -0.11 -0.96 5.20 -26.73 -0.14 -1.10 16 5 C -0.13 -1.28 5.33 -26.73 -0.14 -1.42 16 6 C 0.12 1.68 5.67 -4.04 -0.02 1.65 16 7 N -0.74 -12.37 5.51 -61.23 -0.34 -12.70 16 8 C 0.56 12.56 7.77 -12.31 -0.10 12.46 16 9 O -0.55 -14.05 16.33 5.32 0.09 -13.96 16 10 C -0.13 -3.07 5.87 -105.03 -0.62 -3.68 16 11 C -0.22 -4.62 9.55 -38.92 -0.37 -4.99 16 12 C -0.10 -2.10 10.01 -39.73 -0.40 -2.50 16 13 C -0.21 -5.07 9.78 -38.82 -0.38 -5.45 16 14 C 0.10 2.61 5.57 -106.87 -0.60 2.01 16 15 C -0.46 -12.15 9.05 -37.73 -0.34 -12.49 16 16 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 17 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 18 N -0.78 -20.93 10.95 55.55 0.61 -20.32 16 19 Si 0.91 18.90 29.60 -169.99 -5.03 13.87 16 20 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 21 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 C -0.09 -2.51 8.23 -38.44 -0.32 -2.82 16 24 H 0.10 0.65 7.84 -52.49 -0.41 0.23 16 25 H 0.09 0.59 8.06 -52.49 -0.42 0.17 16 26 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 27 H 0.07 0.50 7.79 -51.93 -0.40 0.09 16 28 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 35 H 0.40 5.71 6.49 -40.82 -0.26 5.45 16 36 H 0.09 1.55 6.38 -52.49 -0.33 1.21 16 37 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 40 H 0.13 3.90 5.74 -52.49 -0.30 3.60 16 LS Contribution 340.04 15.07 5.12 5.12 Total: -1.00 -29.97 340.04 -9.06 -39.03 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -5.92 Total: 8.94 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -3.59 Total: -19.98 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.27 Total: -33.03 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: 0.09 Total: -13.96 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.97 -9.06 -39.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274507623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.494 kcal (2) G-P(sol) polarization free energy of solvation -29.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds