Wall clock time and date at job start Mon Mar 30 2020 01:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 120.00153 * 2 1 4 4 C 1.52996 * 109.47252 * 125.00773 * 3 2 1 5 5 C 1.53001 * 109.47247 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46877 * 180.02562 * 5 4 3 7 7 N 1.46507 * 109.46879 * 179.97438 * 6 5 4 8 8 C 1.34771 * 119.99873 * 179.97438 * 7 6 5 9 9 O 1.21551 * 120.00219 * 0.02562 * 8 7 6 10 10 C 1.47892 * 120.00019 * 179.97438 * 8 7 6 11 11 C 1.39921 * 120.02340 * 359.97438 * 10 8 7 12 12 C 1.38327 * 120.35760 * 180.02562 * 11 10 8 13 13 C 1.37745 * 120.41334 * 359.97438 * 12 11 10 14 14 C 1.40744 * 120.03985 * 359.97438 * 13 12 11 15 15 C 1.41440 * 120.17902 * 180.02562 * 14 13 12 16 16 H 1.07995 * 119.99720 * 24.39575 * 15 14 13 17 17 C 1.39937 * 120.00148 * 204.39015 * 15 14 13 18 18 N 1.30828 * 120.00202 * 17.85017 * 17 15 14 19 19 Si 1.86804 * 120.00094 * 197.84477 * 17 15 14 20 20 H 1.48498 * 109.46884 * 90.00045 * 19 17 15 21 21 H 1.48493 * 109.47017 * 210.00108 * 19 17 15 22 22 H 1.48500 * 109.46917 * 330.00618 * 19 17 15 23 23 C 1.38995 * 120.02504 * 180.02562 * 10 8 7 24 24 H 1.07993 * 120.00031 * 359.97438 * 1 2 3 25 25 H 1.07997 * 119.99815 * 180.02562 * 1 2 3 26 26 H 1.08001 * 119.99711 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.46992 * 5.00244 * 3 2 1 28 28 H 1.09007 * 109.46835 * 245.00543 * 3 2 1 29 29 H 1.09002 * 109.47554 * 59.99815 * 4 3 2 30 30 H 1.09007 * 109.46534 * 300.00265 * 4 3 2 31 31 H 1.08996 * 109.46970 * 59.99437 * 5 4 3 32 32 H 1.09007 * 109.46474 * 299.99546 * 5 4 3 33 33 H 1.08996 * 109.47811 * 59.99914 * 6 5 4 34 34 H 1.09007 * 109.47166 * 299.99084 * 6 5 4 35 35 H 0.96996 * 119.99664 * 359.97438 * 7 6 5 36 36 H 1.07999 * 119.81943 * 359.97438 * 11 10 8 37 37 H 1.08002 * 119.78825 * 180.02562 * 12 11 10 38 38 H 1.08000 * 119.98151 * 180.02562 * 13 12 11 39 39 H 0.96991 * 120.00411 * 180.02562 * 18 17 15 40 40 H 1.07999 * 120.20287 * 359.70584 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0352 1.3330 1.1815 5 6 3.7998 2.6582 1.1818 6 6 4.7719 2.6858 2.3630 7 7 5.5044 3.9546 2.3630 8 6 6.4212 4.2033 3.3190 9 8 6.6407 3.3748 4.1809 10 6 7.1611 5.4838 3.3187 11 6 6.9101 6.4372 2.3258 12 6 7.5985 7.6370 2.3186 13 6 8.5384 7.9074 3.2885 14 6 8.8037 6.9611 4.2960 15 6 9.7678 7.2359 5.2937 16 1 10.0137 8.2583 5.5399 17 6 10.4031 6.1832 5.9618 18 7 10.3838 4.9785 5.4521 19 14 11.2786 6.4980 7.5817 20 1 10.3259 6.3069 8.7046 21 1 12.4104 5.5475 7.7254 22 1 11.7954 7.8900 7.6026 23 6 8.1072 5.7407 4.3041 24 1 -0.5400 0.9352 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6212 1.4026 -0.9315 29 1 3.7401 0.5064 1.0919 30 1 2.4774 1.2354 2.1129 31 1 3.0946 3.4845 1.2717 32 1 4.3575 2.7561 0.2504 33 1 5.4770 1.8596 2.2727 34 1 4.2145 2.5877 3.2947 35 1 5.3295 4.6155 1.6749 36 1 6.1755 6.2349 1.5604 37 1 7.3972 8.3665 1.5481 38 1 9.0716 8.8466 3.2765 39 1 10.8238 4.2487 5.9153 40 1 8.3013 5.0093 5.0746 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274507623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:53 Heat of formation + Delta-G solvation = -42.273857 kcal Electronic energy + Delta-G solvation = -19500.639881 eV Core-core repulsion = 16471.644459 eV Total energy + Delta-G solvation = -3028.995422 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89809 -38.88024 -37.58904 -35.91858 -35.54773 -33.39190 -31.90761 -31.27286 -29.04529 -27.19188 -25.19243 -23.47643 -22.77351 -22.29046 -21.04802 -20.58622 -19.46607 -17.94089 -17.15640 -16.97064 -16.73272 -16.40961 -16.11465 -15.51058 -15.30240 -15.06096 -14.57375 -14.45271 -14.26794 -14.03587 -13.53168 -13.36104 -12.97094 -12.93226 -12.81638 -12.52583 -12.37951 -12.18360 -12.07851 -11.90139 -11.69520 -11.50719 -11.48775 -11.08808 -10.78740 -10.17171 -10.14260 -9.47327 -9.38726 -8.67034 -6.38628 0.37770 1.00562 1.35854 1.43656 1.47917 1.50534 2.09810 2.18835 2.27844 2.78363 3.69771 3.80695 3.95412 4.00762 4.11489 4.26381 4.42409 4.46096 4.50982 4.60007 4.67067 4.75648 4.87424 4.91059 4.93003 5.07748 5.09152 5.13593 5.19637 5.31332 5.32980 5.41066 5.48904 5.52960 5.80063 5.86727 5.92526 5.93155 6.05363 6.28579 6.51744 6.69729 6.87424 6.94541 7.31635 8.29775 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.032082 B = 0.002982 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.544757 B = 9386.856065 C =10124.226656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.164 4.164 3 C -0.091 4.091 4 C -0.109 4.109 5 C -0.118 4.118 6 C 0.117 3.883 7 N -0.713 5.713 8 C 0.557 3.443 9 O -0.592 6.592 10 C -0.140 4.140 11 C -0.197 4.197 12 C -0.096 4.096 13 C -0.217 4.217 14 C 0.065 3.935 15 C -0.497 4.497 16 H 0.085 0.915 17 C 0.028 3.972 18 N -0.826 5.826 19 Si 0.984 3.016 20 H -0.266 1.266 21 H -0.269 1.269 22 H -0.249 1.249 23 C -0.133 4.133 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.110 0.890 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.414 0.586 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.109 0.891 39 H 0.286 0.714 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.315 -4.716 -10.632 18.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.182 4.182 3 C -0.128 4.128 4 C -0.147 4.147 5 C -0.155 4.155 6 C -0.006 4.006 7 N -0.366 5.366 8 C 0.347 3.653 9 O -0.474 6.474 10 C -0.143 4.143 11 C -0.217 4.217 12 C -0.114 4.114 13 C -0.237 4.237 14 C 0.063 3.937 15 C -0.526 4.526 16 H 0.103 0.897 17 C -0.187 4.187 18 N -0.452 5.452 19 Si 0.804 3.196 20 H -0.191 1.191 21 H -0.194 1.194 22 H -0.173 1.173 23 C -0.154 4.154 24 H 0.118 0.882 25 H 0.121 0.879 26 H 0.128 0.872 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.252 0.748 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.096 -5.557 -10.026 18.168 hybrid contribution 0.638 0.004 0.702 0.949 sum -13.458 -5.553 -9.324 17.288 Atomic orbital electron populations 1.24013 0.96054 1.02420 1.01281 1.23110 0.96349 0.98928 0.99821 1.20747 0.98039 0.95434 0.98606 1.21409 0.97859 0.96597 0.98863 1.21742 0.97467 0.99469 0.96858 1.21457 0.94246 0.85012 0.99935 1.45776 1.39946 1.20750 1.30141 1.18796 0.79150 0.86625 0.80777 1.90668 1.67635 1.49367 1.39770 1.19802 1.00089 0.94642 0.99770 1.20872 1.05302 0.94867 1.00621 1.20941 0.95545 0.96815 0.98055 1.21414 1.03996 1.00994 0.97271 1.17970 0.91657 0.91707 0.92372 1.19872 1.19880 0.94658 1.18191 0.89729 1.26886 0.96058 0.93939 1.01842 1.69894 1.34905 1.02471 1.37884 0.85175 0.77816 0.79832 0.76745 1.19142 1.19403 1.17273 1.21461 0.96028 0.98914 0.99004 0.88197 0.87937 0.87198 0.90972 0.90227 0.91608 0.91984 0.89946 0.89924 0.92985 0.92843 0.74788 0.84357 0.84186 0.87289 0.90317 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.53 14.32 67.78 0.97 -1.56 16 2 C -0.16 -2.21 9.52 25.65 0.24 -1.96 16 3 C -0.09 -1.16 5.66 29.85 0.17 -0.99 16 4 C -0.11 -1.64 5.20 30.59 0.16 -1.48 16 5 C -0.12 -1.95 5.33 30.59 0.16 -1.79 16 6 C 0.12 3.08 5.67 86.38 0.49 3.57 16 7 N -0.71 -22.51 5.51 -465.92 -2.57 -25.07 16 8 C 0.56 24.96 7.77 86.80 0.67 25.63 16 9 O -0.59 -31.69 16.33 -3.88 -0.06 -31.75 16 10 C -0.14 -6.69 5.87 -20.13 -0.12 -6.81 16 11 C -0.20 -7.69 9.55 22.70 0.22 -7.47 16 12 C -0.10 -3.76 10.01 22.17 0.22 -3.54 16 13 C -0.22 -10.17 9.78 22.77 0.22 -9.94 16 14 C 0.07 3.59 5.57 -21.32 -0.12 3.47 16 15 C -0.50 -27.34 9.05 23.47 0.21 -27.12 16 16 H 0.08 4.38 7.91 -2.91 -0.02 4.36 16 17 C 0.03 1.46 5.14 85.25 0.44 1.90 16 18 N -0.83 -46.82 10.95 21.82 0.24 -46.58 16 19 Si 0.98 40.13 29.60 68.60 2.03 42.16 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 22 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 23 C -0.13 -7.54 8.23 23.01 0.19 -7.35 16 24 H 0.10 1.15 7.84 -2.91 -0.02 1.12 16 25 H 0.10 1.11 8.06 -2.91 -0.02 1.08 16 26 H 0.11 1.39 8.06 -2.91 -0.02 1.37 16 27 H 0.07 0.86 7.79 -2.39 -0.02 0.84 16 28 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.41 10.25 6.49 -92.71 -0.60 9.65 16 36 H 0.14 3.99 6.38 -2.91 -0.02 3.97 16 37 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 39 H 0.29 14.95 8.30 -92.71 -0.77 14.18 16 40 H 0.10 6.16 5.74 -2.91 -0.02 6.14 16 Total: -1.00 -69.75 340.04 4.20 -65.55 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.42 Total: 31.16 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 4.13 Total: -35.47 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -2.33 Total: -71.65 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.06 Total: -31.75 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Total: -69.75 4.20 -65.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274507623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.277 kcal (2) G-P(sol) polarization free energy of solvation -69.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds