Wall clock time and date at job start Mon Mar 30 2020 02:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46990 * 2 1 4 4 N 1.46504 * 109.46758 * 180.02562 * 3 2 1 5 5 C 1.34773 * 119.99980 * 269.99997 * 4 3 2 6 6 O 1.21691 * 119.99665 * 180.02562 * 5 4 3 7 7 C 1.46368 * 120.00179 * 0.02562 * 5 4 3 8 8 H 1.08002 * 120.00226 * 359.97438 * 7 5 4 9 9 C 1.40051 * 120.00127 * 180.02562 * 7 5 4 10 10 N 1.30675 * 119.99796 * 359.97438 * 9 7 5 11 11 Si 1.86802 * 120.00294 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47206 * 89.99463 * 11 9 7 13 13 H 1.48500 * 109.47417 * 209.99874 * 11 9 7 14 14 H 1.48509 * 109.46733 * 330.00124 * 11 9 7 15 15 C 1.46500 * 119.99879 * 90.00203 * 4 3 2 16 16 H 1.09003 * 110.26879 * 357.92078 * 15 4 3 17 17 C 1.54347 * 110.30332 * 119.99552 * 15 4 3 18 18 C 1.54346 * 102.57063 * 145.17354 * 17 15 4 19 19 C 1.51680 * 105.01917 * 333.89554 * 18 17 15 20 20 C 1.38500 * 130.30857 * 197.10247 * 19 18 17 21 21 C 1.38105 * 120.21504 * 179.79826 * 20 19 18 22 22 C 1.38256 * 119.93143 * 0.02562 * 21 20 19 23 23 C 1.38098 * 119.93662 * 359.97438 * 22 21 20 24 24 C 1.38216 * 109.84140 * 16.91678 * 19 18 17 25 25 H 1.09005 * 109.47027 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47159 * 299.99729 * 1 2 3 27 27 H 1.08995 * 109.47212 * 59.99968 * 1 2 3 28 28 H 1.08997 * 109.46750 * 240.00030 * 2 1 3 29 29 H 1.09004 * 109.47293 * 120.00228 * 2 1 3 30 30 H 1.08997 * 109.47350 * 60.00397 * 3 2 1 31 31 H 1.08995 * 109.47169 * 300.00058 * 3 2 1 32 32 H 0.96999 * 119.99537 * 179.97438 * 10 9 7 33 33 H 1.09002 * 110.82432 * 263.49842 * 17 15 4 34 34 H 1.09005 * 110.82182 * 26.85299 * 17 15 4 35 35 H 1.08998 * 110.30425 * 92.67716 * 18 17 15 36 36 H 1.09000 * 110.30204 * 214.83316 * 18 17 15 37 37 H 1.08004 * 119.89491 * 359.80082 * 20 19 18 38 38 H 1.07999 * 120.03392 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.02919 * 180.02562 * 22 21 20 40 40 H 1.08005 * 119.89353 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1793 1.4423 1.1663 6 8 5.3962 1.4427 1.1657 7 6 3.4481 1.4415 2.4342 8 1 2.3680 1.4416 2.4347 9 6 4.1488 1.4419 3.6468 10 7 5.4556 1.4423 3.6462 11 14 3.2156 1.4402 5.2650 12 1 2.9697 0.0397 5.6932 13 1 4.0178 2.1407 6.2998 14 1 1.9171 2.1389 5.0882 15 6 4.2369 1.4427 -1.2697 16 1 3.5404 1.4058 -2.1073 17 6 5.1314 2.6963 -1.3718 18 6 6.3652 2.1676 -2.1338 19 6 6.4125 0.6836 -1.8235 20 6 7.4453 -0.2286 -1.9636 21 6 7.2587 -1.5498 -1.6075 22 6 6.0371 -1.9643 -1.1100 23 6 5.0062 -1.0563 -0.9696 24 6 5.1915 0.2692 -1.3257 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 5.9409 1.4429 4.4860 33 1 4.6333 3.4826 -1.9391 34 1 5.4119 3.0540 -0.3810 35 1 6.2441 2.3254 -3.2054 36 1 7.2696 2.6609 -1.7778 37 1 8.3997 0.0944 -2.3525 38 1 8.0659 -2.2587 -1.7183 39 1 5.8896 -2.9971 -0.8306 40 1 4.0523 -1.3807 -0.5805 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274707359.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:17 Heat of formation + Delta-G solvation = -15.026790 kcal Electronic energy + Delta-G solvation = -21844.078872 eV Core-core repulsion = 18816.264971 eV Total energy + Delta-G solvation = -3027.813901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.76944 -37.44545 -34.83882 -34.55026 -32.49328 -31.57452 -30.28729 -28.29702 -27.02144 -25.73534 -24.49098 -22.05647 -21.23020 -20.84964 -20.26736 -18.65776 -16.56355 -15.87939 -15.33749 -15.20630 -14.61479 -14.49572 -14.25564 -13.73189 -13.41325 -13.33129 -12.76826 -12.52215 -12.38038 -12.12911 -11.80915 -11.64166 -11.37712 -11.16519 -11.15620 -11.02140 -10.83932 -10.68034 -10.55344 -10.38357 -10.26204 -10.16249 -10.10358 -9.81107 -8.81166 -8.17422 -8.01000 -7.32984 -7.15450 -6.12791 -4.58657 2.01822 2.05691 3.14238 3.21727 3.23984 4.09656 4.33529 4.60882 4.62109 5.06500 5.20698 5.48887 5.51084 5.51561 5.58117 5.65211 5.73239 5.77775 5.86536 5.92610 5.98145 6.02070 6.15318 6.22210 6.24097 6.33768 6.39076 6.40872 6.51758 6.62009 6.71380 6.80110 6.89954 6.99961 7.04995 7.11994 7.34756 7.48660 7.63625 7.71300 8.20061 8.40290 9.07315 9.50379 10.63835 10.84418 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015326 B = 0.007522 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.524766 B = 3721.705785 C = 4373.488715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.129 3.871 4 N -0.638 5.638 5 C 0.559 3.441 6 O -0.558 6.558 7 C -0.543 4.543 8 H 0.070 0.930 9 C 0.089 3.911 10 N -0.766 5.766 11 Si 0.900 3.100 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.265 1.265 15 C 0.195 3.805 16 H 0.077 0.923 17 C -0.128 4.128 18 C -0.073 4.073 19 C -0.086 4.086 20 C -0.114 4.114 21 C -0.129 4.129 22 C -0.127 4.127 23 C -0.089 4.089 24 C -0.064 4.064 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.266 0.734 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.829 -1.977 -9.778 10.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C 0.004 3.996 4 N -0.374 5.374 5 C 0.365 3.635 6 O -0.439 6.439 7 C -0.580 4.580 8 H 0.088 0.912 9 C -0.131 4.131 10 N -0.395 5.395 11 Si 0.725 3.275 12 H -0.199 1.199 13 H -0.206 1.206 14 H -0.190 1.190 15 C 0.090 3.910 16 H 0.095 0.905 17 C -0.167 4.167 18 C -0.110 4.110 19 C -0.086 4.086 20 C -0.132 4.132 21 C -0.148 4.148 22 C -0.145 4.145 23 C -0.107 4.107 24 C -0.065 4.065 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.975 -1.948 -9.647 10.282 hybrid contribution -0.521 -0.195 0.996 1.141 sum -3.496 -2.143 -8.651 9.574 Atomic orbital electron populations 1.21698 0.96539 1.00910 1.01277 1.22010 0.94645 0.99244 1.02260 1.21261 0.82083 0.95111 1.01157 1.48276 1.04434 1.80010 1.04695 1.18143 0.87073 0.76386 0.81920 1.90629 1.13642 1.53714 1.85867 1.21001 0.93555 1.54095 0.89308 0.91214 1.25688 0.94530 0.92784 1.00053 1.70023 1.06888 1.35534 1.27015 0.86496 0.80266 0.78773 0.81976 1.19871 1.20575 1.18953 1.20143 0.91824 0.91188 0.87888 0.90461 1.22695 0.94905 0.96841 1.02219 1.20969 0.99422 0.91549 0.99058 1.20466 0.93959 0.95356 0.98859 1.20436 0.97772 0.93014 1.02020 1.20814 0.97099 0.95594 1.01257 1.20873 0.93669 0.99002 1.00982 1.20487 0.98982 0.92434 0.98781 1.20719 0.95780 0.93990 0.96058 0.93385 0.92731 0.93391 0.93007 0.91003 0.90189 0.93457 0.92311 0.92077 0.88637 0.91395 0.91233 0.87217 0.86894 0.86893 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.14 -2.33 6.26 -26.73 -0.17 -2.50 16 3 C 0.13 2.32 5.09 -4.04 -0.02 2.30 16 4 N -0.64 -13.88 2.46 -167.89 -0.41 -14.29 16 5 C 0.56 15.15 6.83 -12.99 -0.09 15.06 16 6 O -0.56 -17.04 12.38 5.20 0.06 -16.98 16 7 C -0.54 -14.82 8.74 -35.63 -0.31 -15.13 16 8 H 0.07 1.76 6.00 -52.49 -0.31 1.44 16 9 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 10 N -0.77 -22.71 11.83 55.55 0.66 -22.05 16 11 Si 0.90 20.09 29.56 -169.99 -5.02 15.07 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 15 C 0.19 3.80 3.34 -68.05 -0.23 3.58 16 16 H 0.08 1.30 7.86 -51.93 -0.41 0.89 16 17 C -0.13 -2.42 6.34 -25.32 -0.16 -2.58 16 18 C -0.07 -1.24 6.80 -26.69 -0.18 -1.42 16 19 C -0.09 -1.66 6.15 -104.05 -0.64 -2.30 16 20 C -0.11 -2.04 10.04 -39.53 -0.40 -2.44 16 21 C -0.13 -2.23 10.05 -39.62 -0.40 -2.62 16 22 C -0.13 -2.31 10.05 -39.63 -0.40 -2.71 16 23 C -0.09 -1.79 10.00 -39.54 -0.40 -2.18 16 24 C -0.06 -1.32 4.15 -104.21 -0.43 -1.75 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.82 7.94 -51.93 -0.41 0.41 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.08 1.53 6.10 -51.93 -0.32 1.22 16 31 H 0.05 0.73 7.96 -51.93 -0.41 0.32 16 32 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.10 2.22 6.30 -51.93 -0.33 1.89 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.11 2.22 7.86 -52.48 -0.41 1.80 16 LS Contribution 326.26 15.07 4.92 4.92 Total: -1.00 -32.63 326.26 -9.31 -41.94 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -5.97 Total: 5.28 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -3.55 Total: -13.90 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.24 Total: -36.34 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.06 Total: -16.98 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.63 -9.31 -41.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274707359.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.917 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds