Wall clock time and date at job start Mon Mar 30 2020 02:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46990 * 2 1 4 4 N 1.46504 * 109.46758 * 180.02562 * 3 2 1 5 5 C 1.34773 * 119.99980 * 269.99997 * 4 3 2 6 6 O 1.21691 * 119.99665 * 180.02562 * 5 4 3 7 7 C 1.46368 * 120.00179 * 0.02562 * 5 4 3 8 8 H 1.08002 * 120.00226 * 359.97438 * 7 5 4 9 9 C 1.40051 * 120.00127 * 180.02562 * 7 5 4 10 10 N 1.30675 * 119.99796 * 359.97438 * 9 7 5 11 11 Si 1.86802 * 120.00294 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47206 * 89.99463 * 11 9 7 13 13 H 1.48500 * 109.47417 * 209.99874 * 11 9 7 14 14 H 1.48509 * 109.46733 * 330.00124 * 11 9 7 15 15 C 1.46500 * 119.99879 * 90.00203 * 4 3 2 16 16 H 1.09003 * 110.26879 * 357.92078 * 15 4 3 17 17 C 1.54347 * 110.30332 * 119.99552 * 15 4 3 18 18 C 1.54346 * 102.57063 * 145.17354 * 17 15 4 19 19 C 1.51680 * 105.01917 * 333.89554 * 18 17 15 20 20 C 1.38500 * 130.30857 * 197.10247 * 19 18 17 21 21 C 1.38105 * 120.21504 * 179.79826 * 20 19 18 22 22 C 1.38256 * 119.93143 * 0.02562 * 21 20 19 23 23 C 1.38098 * 119.93662 * 359.97438 * 22 21 20 24 24 C 1.38216 * 109.84140 * 16.91678 * 19 18 17 25 25 H 1.09005 * 109.47027 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47159 * 299.99729 * 1 2 3 27 27 H 1.08995 * 109.47212 * 59.99968 * 1 2 3 28 28 H 1.08997 * 109.46750 * 240.00030 * 2 1 3 29 29 H 1.09004 * 109.47293 * 120.00228 * 2 1 3 30 30 H 1.08997 * 109.47350 * 60.00397 * 3 2 1 31 31 H 1.08995 * 109.47169 * 300.00058 * 3 2 1 32 32 H 0.96999 * 119.99537 * 179.97438 * 10 9 7 33 33 H 1.09002 * 110.82432 * 263.49842 * 17 15 4 34 34 H 1.09005 * 110.82182 * 26.85299 * 17 15 4 35 35 H 1.08998 * 110.30425 * 92.67716 * 18 17 15 36 36 H 1.09000 * 110.30204 * 214.83316 * 18 17 15 37 37 H 1.08004 * 119.89491 * 359.80082 * 20 19 18 38 38 H 1.07999 * 120.03392 * 179.97438 * 21 20 19 39 39 H 1.08002 * 120.02919 * 180.02562 * 22 21 20 40 40 H 1.08005 * 119.89353 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1793 1.4423 1.1663 6 8 5.3962 1.4427 1.1657 7 6 3.4481 1.4415 2.4342 8 1 2.3680 1.4416 2.4347 9 6 4.1488 1.4419 3.6468 10 7 5.4556 1.4423 3.6462 11 14 3.2156 1.4402 5.2650 12 1 2.9697 0.0397 5.6932 13 1 4.0178 2.1407 6.2998 14 1 1.9171 2.1389 5.0882 15 6 4.2369 1.4427 -1.2697 16 1 3.5404 1.4058 -2.1073 17 6 5.1314 2.6963 -1.3718 18 6 6.3652 2.1676 -2.1338 19 6 6.4125 0.6836 -1.8235 20 6 7.4453 -0.2286 -1.9636 21 6 7.2587 -1.5498 -1.6075 22 6 6.0371 -1.9643 -1.1100 23 6 5.0062 -1.0563 -0.9696 24 6 5.1915 0.2692 -1.3257 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 5.9409 1.4429 4.4860 33 1 4.6333 3.4826 -1.9391 34 1 5.4119 3.0540 -0.3810 35 1 6.2441 2.3254 -3.2054 36 1 7.2696 2.6609 -1.7778 37 1 8.3997 0.0944 -2.3525 38 1 8.0659 -2.2587 -1.7183 39 1 5.8896 -2.9971 -0.8306 40 1 4.0523 -1.3807 -0.5805 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274707359.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:16 Heat of formation + Delta-G solvation = -33.144794 kcal Electronic energy + Delta-G solvation = -21844.864527 eV Core-core repulsion = 18816.264971 eV Total energy + Delta-G solvation = -3028.599556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.28420 -39.15612 -36.59574 -35.99677 -34.53583 -33.08911 -31.75011 -29.74363 -28.80106 -27.35702 -26.06425 -23.50521 -22.81967 -22.29760 -21.66477 -20.44756 -18.29745 -17.74145 -17.00246 -16.75812 -16.11095 -16.05643 -15.68980 -15.29682 -14.95692 -14.85207 -14.35908 -14.02779 -13.86194 -13.70082 -13.35067 -13.02609 -12.99687 -12.85026 -12.71524 -12.50671 -12.45212 -12.21671 -12.05081 -11.95376 -11.86500 -11.73765 -11.51721 -11.36397 -10.87073 -9.76626 -9.55020 -9.18600 -8.91375 -8.18326 -6.72909 0.58887 0.61083 1.37374 1.38091 1.51880 2.24316 2.56596 2.81525 3.05839 3.63547 3.68983 3.87940 4.13405 4.18485 4.20606 4.24274 4.31797 4.41083 4.46476 4.55043 4.66994 4.73049 4.78176 4.82543 4.90374 4.94475 5.05291 5.14828 5.23412 5.24808 5.35891 5.38574 5.41183 5.44368 5.56521 5.63883 5.68573 5.85953 5.92518 6.23104 6.26344 6.56355 6.96952 7.58029 8.60465 8.81776 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015326 B = 0.007522 C = 0.006401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.524766 B = 3721.705785 C = 4373.488715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.123 3.877 4 N -0.636 5.636 5 C 0.551 3.449 6 O -0.602 6.602 7 C -0.567 4.567 8 H 0.084 0.916 9 C 0.033 3.967 10 N -0.820 5.820 11 Si 0.980 3.020 12 H -0.267 1.267 13 H -0.276 1.276 14 H -0.249 1.249 15 C 0.188 3.812 16 H 0.109 0.891 17 C -0.125 4.125 18 C -0.066 4.066 19 C -0.107 4.107 20 C -0.124 4.124 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.115 4.115 24 C -0.090 4.090 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.268 0.732 33 H 0.094 0.906 34 H 0.043 0.957 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.137 0.863 38 H 0.147 0.853 39 H 0.134 0.866 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.153 -2.140 -10.963 12.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C 0.000 4.000 4 N -0.371 5.371 5 C 0.356 3.644 6 O -0.486 6.486 7 C -0.604 4.604 8 H 0.102 0.898 9 C -0.181 4.181 10 N -0.450 5.450 11 Si 0.801 3.199 12 H -0.192 1.192 13 H -0.201 1.201 14 H -0.172 1.172 15 C 0.084 3.916 16 H 0.127 0.873 17 C -0.164 4.164 18 C -0.103 4.103 19 C -0.108 4.108 20 C -0.141 4.141 21 C -0.148 4.148 22 C -0.156 4.156 23 C -0.133 4.133 24 C -0.092 4.092 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.062 0.938 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.155 0.845 38 H 0.165 0.835 39 H 0.152 0.848 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.350 -2.110 -10.874 11.900 hybrid contribution -0.097 -0.169 1.266 1.281 sum -4.447 -2.279 -9.607 10.829 Atomic orbital electron populations 1.21640 0.93552 1.02102 1.02338 1.21874 0.97120 0.97547 1.00683 1.21477 0.79910 0.96488 1.02115 1.48052 1.05979 1.78704 1.04357 1.18316 0.86693 0.75878 0.83520 1.90582 1.15501 1.55410 1.87112 1.21486 0.94440 1.54215 0.90238 0.89841 1.26792 0.95335 0.91674 1.04336 1.70202 1.09135 1.37495 1.28191 0.85271 0.79134 0.79116 0.76384 1.19158 1.20130 1.17211 1.20432 0.92390 0.91331 0.87460 0.87337 1.22610 0.96108 0.97471 1.00181 1.20992 0.98309 0.90022 1.00980 1.20895 0.94033 0.96739 0.99096 1.20865 0.98540 0.93186 1.01554 1.21251 0.97511 0.96170 0.99899 1.21220 0.93735 0.99868 1.00780 1.20638 0.99437 0.93217 1.00035 1.20943 0.96837 0.94300 0.97073 0.92185 0.92789 0.91178 0.92692 0.94525 0.91604 0.89970 0.92199 0.88784 0.93808 0.87558 0.91604 0.84530 0.83525 0.84774 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.91 71.98 0.71 -2.61 16 2 C -0.13 -4.28 6.26 30.59 0.19 -4.09 16 3 C 0.12 4.36 5.09 86.38 0.44 4.80 16 4 N -0.64 -28.04 2.46 -803.31 -1.98 -30.02 16 5 C 0.55 31.00 6.83 86.36 0.59 31.59 16 6 O -0.60 -38.60 12.38 -4.32 -0.05 -38.65 16 7 C -0.57 -31.85 8.74 24.83 0.22 -31.63 16 8 H 0.08 4.28 6.00 -2.91 -0.02 4.26 16 9 C 0.03 1.87 5.50 85.30 0.47 2.34 16 10 N -0.82 -50.63 11.83 21.84 0.26 -50.37 16 11 Si 0.98 41.90 29.56 68.60 2.03 43.92 16 12 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 13 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 14 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 15 C 0.19 7.28 3.34 44.92 0.15 7.43 16 16 H 0.11 3.43 7.86 -2.39 -0.02 3.41 16 17 C -0.13 -4.69 6.34 31.51 0.20 -4.49 16 18 C -0.07 -2.18 6.80 30.62 0.21 -1.97 16 19 C -0.11 -4.10 6.15 -19.49 -0.12 -4.22 16 20 C -0.12 -4.25 10.04 22.30 0.22 -4.03 16 21 C -0.13 -4.30 10.05 22.24 0.22 -4.08 16 22 C -0.14 -4.98 10.05 22.24 0.22 -4.76 16 23 C -0.11 -4.73 10.00 22.30 0.22 -4.51 16 24 C -0.09 -3.73 4.15 -19.60 -0.08 -3.82 16 25 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.71 7.94 -2.39 -0.02 1.69 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 2.50 6.10 -2.39 -0.01 2.49 16 31 H 0.08 2.33 7.96 -2.39 -0.02 2.31 16 32 H 0.27 15.25 8.29 -92.71 -0.77 14.48 16 33 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.04 2.11 6.30 -2.38 -0.02 2.09 16 35 H 0.11 2.67 8.14 -2.39 -0.02 2.66 16 36 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 38 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 39 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 40 H 0.10 4.19 7.86 -2.91 -0.02 4.17 16 Total: -1.00 -75.13 326.26 5.14 -69.98 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 1.02 Total: 29.17 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 3.87 Total: -24.04 kcal Atomic # 7 Polarization: -78.67 SS G_CDS: -1.72 Total: -80.39 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.05 Total: -38.65 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -75.13 5.14 -69.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274707359.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.837 kcal (2) G-P(sol) polarization free energy of solvation -75.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds