Wall clock time and date at job start Mon Mar 30 2020 02:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 N 1.46496 * 109.47079 * 179.97438 * 3 2 1 5 5 C 1.34787 * 119.99832 * 90.00060 * 4 3 2 6 6 O 1.21683 * 119.99942 * 179.97438 * 5 4 3 7 7 C 1.46376 * 119.99611 * 0.02562 * 5 4 3 8 8 H 1.08002 * 120.00081 * 359.97438 * 7 5 4 9 9 C 1.40046 * 119.99787 * 179.97438 * 7 5 4 10 10 N 1.30674 * 119.99944 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 120.00059 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46818 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46946 * 119.99755 * 11 9 7 14 14 H 1.48497 * 109.47030 * 239.99913 * 11 9 7 15 15 C 1.46500 * 120.00407 * 270.00238 * 4 3 2 16 16 H 1.08997 * 110.27017 * 2.07166 * 15 4 3 17 17 C 1.54346 * 110.30213 * 239.99739 * 15 4 3 18 18 C 1.54351 * 102.39093 * 214.72641 * 17 15 4 19 19 C 1.51366 * 105.17233 * 26.34778 * 18 17 15 20 20 C 1.38500 * 130.39682 * 162.79119 * 19 18 17 21 21 C 1.38101 * 120.21336 * 180.02562 * 20 19 18 22 22 C 1.38247 * 119.94177 * 359.95952 * 21 20 19 23 23 C 1.38103 * 119.93129 * 0.02562 * 22 21 20 24 24 C 1.38219 * 109.75581 * 342.81758 * 19 18 17 25 25 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 28 28 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 29 29 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 30 30 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 31 31 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 32 32 H 0.97005 * 119.99862 * 179.97438 * 10 9 7 33 33 H 1.08994 * 110.82841 * 332.95004 * 17 15 4 34 34 H 1.09004 * 110.82046 * 96.50142 * 17 15 4 35 35 H 1.09000 * 110.30394 * 145.27343 * 18 17 15 36 36 H 1.09001 * 110.30190 * 267.32356 * 18 17 15 37 37 H 1.08000 * 119.88636 * 0.03165 * 20 19 18 38 38 H 1.07999 * 120.02657 * 179.97438 * 21 20 19 39 39 H 1.07998 * 120.03587 * 179.97438 * 22 21 20 40 40 H 1.08005 * 119.89425 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1794 1.4423 -1.1664 6 8 5.3962 1.4427 -1.1659 7 6 3.4479 1.4427 -2.4343 8 1 2.3679 1.4427 -2.4347 9 6 4.1486 1.4430 -3.6469 10 7 5.4554 1.4435 -3.6464 11 14 3.2152 1.4428 -5.2650 12 1 1.7551 1.4429 -4.9941 13 1 3.5738 2.6556 -6.0434 14 1 3.5747 0.2306 -6.0436 15 6 4.2371 1.4426 1.2696 16 1 3.5407 1.4057 2.1073 17 6 5.1317 2.6962 1.3716 18 6 6.3623 2.1635 2.1360 19 6 6.4127 0.6834 1.8233 20 6 7.4455 -0.2289 1.9629 21 6 7.2588 -1.5499 1.6064 22 6 6.0372 -1.9644 1.1092 23 6 5.0061 -1.0564 0.9696 24 6 5.1917 0.2692 1.3254 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 5.9407 1.4434 -4.4863 33 1 5.4150 3.0518 0.3811 34 1 4.6336 3.4825 1.9390 35 1 7.2687 2.6557 1.7834 36 1 6.2395 2.3213 3.2075 37 1 8.3998 0.0941 2.3520 38 1 8.0663 -2.2586 1.7162 39 1 5.8897 -2.9971 0.8296 40 1 4.0522 -1.3808 0.5807 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274707360.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:21 Heat of formation + Delta-G solvation = -33.119878 kcal Electronic energy + Delta-G solvation = -21846.143376 eV Core-core repulsion = 18817.544900 eV Total energy + Delta-G solvation = -3028.598476 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.29406 -39.15871 -36.59928 -36.00343 -34.53804 -33.09275 -31.75103 -29.74341 -28.80161 -27.35901 -26.06500 -23.51024 -22.82130 -22.29791 -21.66057 -20.44880 -18.29873 -17.74580 -17.00328 -16.76250 -16.10753 -16.05798 -15.68982 -15.29885 -14.95731 -14.85469 -14.36439 -14.02946 -13.86043 -13.70203 -13.35420 -13.03219 -12.98361 -12.86433 -12.71730 -12.50766 -12.45677 -12.22333 -12.02822 -11.95087 -11.86226 -11.73448 -11.51861 -11.36388 -10.88398 -9.76529 -9.54905 -9.18477 -8.91302 -8.18539 -6.72957 0.58802 0.61066 1.36610 1.37462 1.53159 2.24225 2.56466 2.81556 3.05752 3.63681 3.68840 3.88347 4.13519 4.18505 4.20611 4.24310 4.31869 4.40972 4.46528 4.54985 4.66998 4.73062 4.78365 4.82627 4.90367 4.94417 5.05166 5.14759 5.23487 5.24836 5.35950 5.38705 5.41297 5.44429 5.56493 5.63930 5.68586 5.85932 5.92496 6.23276 6.26450 6.56345 6.96994 7.57943 8.60410 8.81710 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.015330 B = 0.007522 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.067362 B = 3721.740609 C = 4373.871521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.123 3.877 4 N -0.636 5.636 5 C 0.551 3.449 6 O -0.601 6.601 7 C -0.566 4.566 8 H 0.084 0.916 9 C 0.033 3.967 10 N -0.820 5.820 11 Si 0.980 3.020 12 H -0.247 1.247 13 H -0.271 1.271 14 H -0.274 1.274 15 C 0.188 3.812 16 H 0.109 0.891 17 C -0.125 4.125 18 C -0.066 4.066 19 C -0.107 4.107 20 C -0.124 4.124 21 C -0.130 4.130 22 C -0.138 4.138 23 C -0.115 4.115 24 C -0.091 4.091 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.268 0.732 33 H 0.043 0.957 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.147 0.853 39 H 0.134 0.866 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.166 -2.158 10.981 12.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C 0.000 4.000 4 N -0.371 5.371 5 C 0.356 3.644 6 O -0.486 6.486 7 C -0.603 4.603 8 H 0.102 0.898 9 C -0.182 4.182 10 N -0.450 5.450 11 Si 0.801 3.199 12 H -0.170 1.170 13 H -0.196 1.196 14 H -0.199 1.199 15 C 0.084 3.916 16 H 0.127 0.873 17 C -0.164 4.164 18 C -0.104 4.104 19 C -0.107 4.107 20 C -0.141 4.141 21 C -0.148 4.148 22 C -0.156 4.156 23 C -0.133 4.133 24 C -0.092 4.092 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.155 0.845 38 H 0.165 0.835 39 H 0.152 0.848 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.367 -2.132 10.893 11.928 hybrid contribution -0.082 -0.157 -1.272 1.284 sum -4.449 -2.289 9.621 10.844 Atomic orbital electron populations 1.21640 0.93566 1.02100 1.02321 1.21874 0.97109 0.97559 1.00681 1.21476 0.79912 0.96485 1.02115 1.48054 1.05975 1.78702 1.04359 1.18328 0.86694 0.75873 0.83528 1.90580 1.15510 1.55390 1.87110 1.21516 0.94444 1.54123 0.90225 0.89832 1.26791 0.95337 0.91681 1.04346 1.70209 1.09140 1.37572 1.28124 0.85218 0.79707 0.78245 0.76714 1.17038 1.19604 1.19911 1.20435 0.92389 0.91339 0.87466 0.87331 1.22616 0.96101 0.97475 1.00161 1.20936 0.98345 0.90088 1.00984 1.20828 0.94048 0.96748 0.99117 1.20860 0.98537 0.93182 1.01560 1.21246 0.97514 0.96169 0.99900 1.21218 0.93731 0.99871 1.00774 1.20644 0.99436 0.93219 1.00033 1.20954 0.96826 0.94302 0.97087 0.92823 0.92181 0.91172 0.92679 0.94531 0.91607 0.89964 0.92206 0.93783 0.88747 0.91654 0.87542 0.84534 0.83529 0.84769 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 9.91 71.98 0.71 -2.61 16 2 C -0.13 -4.28 6.26 30.60 0.19 -4.09 16 3 C 0.12 4.36 5.09 86.38 0.44 4.80 16 4 N -0.64 -28.03 2.46 -803.32 -1.98 -30.01 16 5 C 0.55 30.98 6.84 86.36 0.59 31.57 16 6 O -0.60 -38.58 12.37 -4.29 -0.05 -38.63 16 7 C -0.57 -31.80 8.74 24.83 0.22 -31.59 16 8 H 0.08 4.29 6.00 -2.91 -0.02 4.28 16 9 C 0.03 1.85 5.50 85.30 0.47 2.32 16 10 N -0.82 -50.63 11.83 21.84 0.26 -50.37 16 11 Si 0.98 41.92 29.56 68.60 2.03 43.94 16 12 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 13 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 14 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 15 C 0.19 7.27 3.34 44.92 0.15 7.42 16 16 H 0.11 3.43 7.86 -2.39 -0.02 3.41 16 17 C -0.13 -4.68 6.35 31.51 0.20 -4.48 16 18 C -0.07 -2.20 6.77 30.52 0.21 -1.99 16 19 C -0.11 -4.09 6.14 -19.59 -0.12 -4.21 16 20 C -0.12 -4.25 10.04 22.30 0.22 -4.03 16 21 C -0.13 -4.30 10.05 22.24 0.22 -4.08 16 22 C -0.14 -4.98 10.05 22.24 0.22 -4.75 16 23 C -0.11 -4.73 10.00 22.30 0.22 -4.51 16 24 C -0.09 -3.74 4.15 -19.59 -0.08 -3.82 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.72 7.94 -2.39 -0.02 1.70 16 29 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 2.50 6.09 -2.39 -0.01 2.49 16 31 H 0.08 2.33 7.96 -2.39 -0.02 2.31 16 32 H 0.27 15.20 8.29 -92.70 -0.77 14.43 16 33 H 0.04 2.12 6.30 -2.39 -0.02 2.10 16 34 H 0.09 2.80 8.14 -2.38 -0.02 2.79 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 38 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 39 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 40 H 0.10 4.19 7.86 -2.91 -0.02 4.17 16 Total: -1.00 -75.15 326.23 5.14 -70.01 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 1.02 Total: 29.09 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 3.87 Total: -24.04 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -1.72 Total: -80.38 kcal Atomic # 8 Polarization: -38.58 SS G_CDS: -0.05 Total: -38.63 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -75.15 5.14 -70.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274707360.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.891 kcal (2) G-P(sol) polarization free energy of solvation -75.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds