Wall clock time and date at job start Mon Mar 30 2020 01:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50695 * 119.99697 * 2 1 4 4 C 1.53002 * 109.47095 * 123.20176 * 3 2 1 5 5 H 1.08994 * 109.46950 * 305.67011 * 4 3 2 6 6 C 1.50710 * 109.46994 * 65.66693 * 4 3 2 7 7 O 1.21283 * 119.99580 * 34.02862 * 6 4 3 8 8 N 1.34773 * 119.99711 * 214.03019 * 6 4 3 9 9 C 1.46502 * 119.99683 * 175.38547 * 8 6 4 10 10 C 1.52993 * 109.47386 * 179.72231 * 9 8 6 11 11 C 1.50699 * 109.47408 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99969 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99826 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00398 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99861 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46938 * 89.99943 * 15 13 11 17 17 H 1.48493 * 109.47120 * 210.00379 * 15 13 11 18 18 H 1.48502 * 109.46944 * 330.00287 * 15 13 11 19 19 C 1.50699 * 109.46993 * 185.66574 * 4 3 2 20 20 C 1.38233 * 120.00183 * 299.72604 * 19 4 3 21 21 C 1.38238 * 119.99658 * 179.79081 * 20 19 4 22 22 C 1.38234 * 120.00112 * 0.44288 * 21 20 19 23 23 C 1.38230 * 119.99900 * 359.81238 * 22 21 20 24 24 C 1.38230 * 120.00362 * 359.97438 * 23 22 21 25 25 H 1.07999 * 120.00305 * 359.97438 * 1 2 3 26 26 H 1.08006 * 119.99694 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.99794 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47653 * 3.20242 * 3 2 1 29 29 H 1.09008 * 109.47246 * 243.20115 * 3 2 1 30 30 H 0.96995 * 120.00492 * 355.10710 * 8 6 4 31 31 H 1.09004 * 109.47131 * 299.72501 * 9 8 6 32 32 H 1.09004 * 109.46895 * 59.72224 * 9 8 6 33 33 H 1.08997 * 109.47207 * 300.00662 * 10 9 8 34 34 H 1.09004 * 109.46956 * 59.99592 * 10 9 8 35 35 H 0.96994 * 120.00380 * 179.97438 * 14 13 11 36 36 H 1.08000 * 120.00076 * 359.97438 * 20 19 4 37 37 H 1.08001 * 119.99747 * 180.27793 * 21 20 19 38 38 H 1.08004 * 119.99587 * 179.83735 * 22 21 20 39 39 H 1.08005 * 120.00156 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.00321 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0025 1.3519 1.2070 5 1 2.4328 1.1682 2.1179 6 6 4.0656 0.2941 1.0577 7 8 4.4870 0.0092 -0.0434 8 7 4.5479 -0.3351 2.1475 9 6 5.5065 -1.4325 1.9955 10 6 5.8967 -1.9639 3.3761 11 6 6.8823 -3.0931 3.2197 12 1 7.1990 -3.4008 2.2341 13 6 7.3796 -3.7335 4.3349 14 7 6.9935 -3.3592 5.5351 15 14 8.6018 -5.1328 4.1411 16 1 9.9831 -4.5876 4.1442 17 1 8.4439 -6.0876 5.2674 18 1 8.3500 -5.8357 2.8574 19 6 3.6521 2.7094 1.2857 20 6 4.4359 3.1622 0.2410 21 6 5.0282 4.4093 0.3115 22 6 4.8442 5.1997 1.4306 23 6 4.0647 4.7446 2.4775 24 6 3.4688 3.4994 2.4052 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3565 2.1328 0.0574 29 1 2.6464 1.3881 -0.9173 30 1 4.2635 -0.0588 3.0327 31 1 5.0520 -2.2339 1.4129 32 1 6.3963 -1.0691 1.4813 33 1 6.3511 -1.1625 3.9587 34 1 5.0069 -2.3272 3.8904 35 1 7.3431 -3.8100 6.3196 36 1 4.5831 2.5430 -0.6315 37 1 5.6369 4.7650 -0.5067 38 1 5.3091 6.1729 1.4866 39 1 3.9205 5.3623 3.3517 40 1 2.8594 3.1441 3.2231 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275023358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:30 Heat of formation + Delta-G solvation = -15.885319 kcal Electronic energy + Delta-G solvation = -20173.912020 eV Core-core repulsion = 17146.060891 eV Total energy + Delta-G solvation = -3027.851129 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.21281 -38.58545 -35.64982 -34.72116 -32.92204 -32.53106 -30.95395 -29.71669 -28.64179 -25.36556 -24.01103 -22.65849 -21.90714 -20.85087 -20.17779 -19.32461 -17.09665 -16.85845 -16.29296 -15.58951 -15.41713 -14.94186 -14.64372 -14.56535 -14.46465 -13.73740 -13.59633 -13.40577 -12.83446 -12.80595 -12.55151 -12.33940 -12.04259 -11.58292 -11.36069 -11.20841 -11.08959 -11.03952 -10.79499 -10.64187 -10.32094 -9.81222 -9.50929 -9.40811 -9.24260 -8.96946 -8.67559 -8.53035 -8.34398 -6.09375 -4.12258 1.23483 1.35207 2.25283 2.99199 3.29373 3.35401 3.39270 3.60277 3.83122 4.41813 4.55618 4.74787 4.89596 4.95772 5.04227 5.07589 5.16380 5.26350 5.27687 5.36624 5.47621 5.52310 5.67551 5.89445 5.94392 5.98237 6.00871 6.33360 6.35102 6.38879 6.45759 6.53830 6.61786 6.73679 6.74493 6.91915 6.94463 7.51759 7.61802 7.88698 8.02464 8.27776 8.65177 8.93716 9.52600 11.02242 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.004076 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.769131 B = 6867.848638 C = 7833.304474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 C -0.073 4.073 4 C -0.064 4.064 5 H 0.096 0.904 6 C 0.517 3.483 7 O -0.546 6.546 8 N -0.720 5.720 9 C 0.122 3.878 10 C 0.013 3.987 11 C -0.521 4.521 12 H 0.059 0.941 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.896 3.104 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.075 4.075 20 C -0.103 4.103 21 C -0.120 4.120 22 C -0.122 4.122 23 C -0.121 4.121 24 C -0.111 4.111 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.397 0.603 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.262 0.738 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.811 15.567 -7.086 20.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.164 4.164 3 C -0.110 4.110 4 C -0.086 4.086 5 H 0.114 0.886 6 C 0.302 3.698 7 O -0.425 6.425 8 N -0.369 5.369 9 C 0.000 4.000 10 C -0.025 4.025 11 C -0.560 4.560 12 H 0.077 0.923 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.724 3.276 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.076 4.076 20 C -0.121 4.121 21 C -0.138 4.138 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.129 4.129 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.128 0.872 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.231 0.769 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.072 0.928 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.478 15.273 -7.682 20.051 hybrid contribution 0.612 -0.704 0.580 1.099 sum -9.865 14.568 -7.103 18.974 Atomic orbital electron populations 1.23807 0.95764 1.01652 1.02316 1.23011 0.95954 0.98748 0.98726 1.20655 0.97161 0.95563 0.97632 1.20315 0.95398 0.91523 1.01345 0.88593 1.20263 0.82687 0.81961 0.84918 1.90650 1.60308 1.65693 1.25818 1.46357 1.45904 1.36120 1.08486 1.21718 0.90306 0.86630 1.01393 1.19318 0.97050 0.96359 0.89755 1.21051 1.25366 1.16620 0.92982 0.92285 1.24991 0.96671 0.97376 0.95187 1.69952 1.43983 1.41747 0.97622 0.86520 0.81403 0.81880 0.77814 1.20549 1.21153 1.19725 1.19467 0.98607 0.94502 0.95001 1.21186 0.96126 0.95899 0.98890 1.21155 0.99831 0.94517 0.98318 1.21165 0.98923 0.99839 0.94049 1.21104 0.97909 0.96175 0.98750 1.21081 1.00061 0.94481 0.97260 0.88726 0.88544 0.87163 0.90767 0.89421 0.76933 0.92639 0.92599 0.95973 0.95952 0.92849 0.85302 0.86058 0.86221 0.86009 0.85816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.04 14.32 29.01 0.42 -1.62 16 2 C -0.15 -1.78 9.08 -36.03 -0.33 -2.11 16 3 C -0.07 -0.86 4.62 -27.88 -0.13 -0.99 16 4 C -0.06 -0.82 2.35 -92.92 -0.22 -1.03 16 5 H 0.10 1.06 7.87 -51.93 -0.41 0.65 16 6 C 0.52 8.67 5.78 -10.98 -0.06 8.61 16 7 O -0.55 -10.86 15.65 5.56 0.09 -10.77 16 8 N -0.72 -12.74 5.55 -60.29 -0.33 -13.07 16 9 C 0.12 2.62 5.62 -4.04 -0.02 2.59 16 10 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 11 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 12 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 15 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 19 C -0.08 -0.94 4.77 -104.62 -0.50 -1.44 16 20 C -0.10 -1.32 8.86 -39.58 -0.35 -1.67 16 21 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 22 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 23 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 24 C -0.11 -1.22 9.67 -39.58 -0.38 -1.60 16 25 H 0.09 0.83 7.84 -52.49 -0.41 0.42 16 26 H 0.10 0.91 8.06 -52.48 -0.42 0.49 16 27 H 0.11 1.55 7.82 -52.49 -0.41 1.14 16 28 H 0.07 0.74 7.79 -51.93 -0.40 0.34 16 29 H 0.09 1.13 7.12 -51.92 -0.37 0.76 16 30 H 0.40 6.21 8.48 -40.82 -0.35 5.86 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.13 1.75 7.20 -52.49 -0.38 1.37 16 37 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 39 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 40 H 0.12 1.12 7.95 -52.49 -0.42 0.70 16 LS Contribution 343.11 15.07 5.17 5.17 Total: -1.00 -31.36 343.11 -8.75 -40.12 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.07 Total: 5.00 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -3.32 Total: -17.39 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.40 Total: -38.55 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.36 -8.75 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275023358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.231 kcal (2) G-P(sol) polarization free energy of solvation -31.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds