Wall clock time and date at job start Mon Mar 30 2020 01:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50695 * 119.99697 * 2 1 4 4 C 1.53002 * 109.47095 * 123.20176 * 3 2 1 5 5 H 1.08994 * 109.46950 * 305.67011 * 4 3 2 6 6 C 1.50710 * 109.46994 * 65.66693 * 4 3 2 7 7 O 1.21283 * 119.99580 * 34.02862 * 6 4 3 8 8 N 1.34773 * 119.99711 * 214.03019 * 6 4 3 9 9 C 1.46502 * 119.99683 * 175.38547 * 8 6 4 10 10 C 1.52993 * 109.47386 * 179.72231 * 9 8 6 11 11 C 1.50699 * 109.47408 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99969 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99826 * 180.02562 * 11 10 9 14 14 N 1.31513 * 120.00398 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99861 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46938 * 89.99943 * 15 13 11 17 17 H 1.48493 * 109.47120 * 210.00379 * 15 13 11 18 18 H 1.48502 * 109.46944 * 330.00287 * 15 13 11 19 19 C 1.50699 * 109.46993 * 185.66574 * 4 3 2 20 20 C 1.38233 * 120.00183 * 299.72604 * 19 4 3 21 21 C 1.38238 * 119.99658 * 179.79081 * 20 19 4 22 22 C 1.38234 * 120.00112 * 0.44288 * 21 20 19 23 23 C 1.38230 * 119.99900 * 359.81238 * 22 21 20 24 24 C 1.38230 * 120.00362 * 359.97438 * 23 22 21 25 25 H 1.07999 * 120.00305 * 359.97438 * 1 2 3 26 26 H 1.08006 * 119.99694 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.99794 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47653 * 3.20242 * 3 2 1 29 29 H 1.09008 * 109.47246 * 243.20115 * 3 2 1 30 30 H 0.96995 * 120.00492 * 355.10710 * 8 6 4 31 31 H 1.09004 * 109.47131 * 299.72501 * 9 8 6 32 32 H 1.09004 * 109.46895 * 59.72224 * 9 8 6 33 33 H 1.08997 * 109.47207 * 300.00662 * 10 9 8 34 34 H 1.09004 * 109.46956 * 59.99592 * 10 9 8 35 35 H 0.96994 * 120.00380 * 179.97438 * 14 13 11 36 36 H 1.08000 * 120.00076 * 359.97438 * 20 19 4 37 37 H 1.08001 * 119.99747 * 180.27793 * 21 20 19 38 38 H 1.08004 * 119.99587 * 179.83735 * 22 21 20 39 39 H 1.08005 * 120.00156 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.00321 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 3.0025 1.3519 1.2070 5 1 2.4328 1.1682 2.1179 6 6 4.0656 0.2941 1.0577 7 8 4.4870 0.0092 -0.0434 8 7 4.5479 -0.3351 2.1475 9 6 5.5065 -1.4325 1.9955 10 6 5.8967 -1.9639 3.3761 11 6 6.8823 -3.0931 3.2197 12 1 7.1990 -3.4008 2.2341 13 6 7.3796 -3.7335 4.3349 14 7 6.9935 -3.3592 5.5351 15 14 8.6018 -5.1328 4.1411 16 1 9.9831 -4.5876 4.1442 17 1 8.4439 -6.0876 5.2674 18 1 8.3500 -5.8357 2.8574 19 6 3.6521 2.7094 1.2857 20 6 4.4359 3.1622 0.2410 21 6 5.0282 4.4093 0.3115 22 6 4.8442 5.1997 1.4306 23 6 4.0647 4.7446 2.4775 24 6 3.4688 3.4994 2.4052 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9354 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3565 2.1328 0.0574 29 1 2.6464 1.3881 -0.9173 30 1 4.2635 -0.0588 3.0327 31 1 5.0520 -2.2339 1.4129 32 1 6.3963 -1.0691 1.4813 33 1 6.3511 -1.1625 3.9587 34 1 5.0069 -2.3272 3.8904 35 1 7.3431 -3.8100 6.3196 36 1 4.5831 2.5430 -0.6315 37 1 5.6369 4.7650 -0.5067 38 1 5.3091 6.1729 1.4866 39 1 3.9205 5.3623 3.3517 40 1 2.8594 3.1441 3.2231 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275023358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:30 Heat of formation + Delta-G solvation = -33.586416 kcal Electronic energy + Delta-G solvation = -20174.679597 eV Core-core repulsion = 17146.060891 eV Total energy + Delta-G solvation = -3028.618706 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.38007 -39.66963 -36.89559 -36.21986 -34.83345 -33.55395 -31.78957 -31.53328 -29.61551 -27.08097 -25.29762 -23.52891 -23.24820 -22.48164 -21.21914 -20.46572 -18.64006 -18.09562 -17.76839 -16.81879 -16.56333 -16.45863 -16.18834 -15.82617 -15.52055 -14.96857 -14.95067 -14.33280 -14.22576 -14.13701 -13.70230 -13.63208 -13.24910 -13.00751 -12.94822 -12.54534 -12.52766 -12.25453 -12.21434 -11.94970 -11.69397 -11.66361 -11.47149 -10.83969 -10.61771 -10.30771 -10.02264 -9.81270 -9.60491 -8.25345 -6.36126 0.36984 0.50745 1.36927 1.40778 1.41223 1.52743 1.65142 2.25505 2.44668 2.89204 3.09294 3.61795 3.75850 3.89581 4.13423 4.19625 4.22143 4.23834 4.32854 4.43270 4.47702 4.49674 4.65181 4.68504 4.81652 4.83727 5.03577 5.06657 5.10527 5.17312 5.28310 5.47729 5.55703 5.57141 5.63093 5.65685 5.73459 5.76892 5.86125 6.10983 6.14628 6.61775 6.76755 7.26457 7.33312 8.86543 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.004076 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.769131 B = 6867.848638 C = 7833.304474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.175 4.175 3 C -0.065 4.065 4 C -0.052 4.052 5 H 0.118 0.882 6 C 0.517 3.483 7 O -0.581 6.581 8 N -0.718 5.718 9 C 0.142 3.858 10 C 0.024 3.976 11 C -0.548 4.548 12 H 0.057 0.943 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.964 3.036 16 H -0.272 1.272 17 H -0.278 1.278 18 H -0.267 1.267 19 C -0.090 4.090 20 C -0.125 4.125 21 C -0.130 4.130 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.115 4.115 25 H 0.117 0.883 26 H 0.104 0.896 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.409 0.591 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.006 0.994 34 H 0.010 0.990 35 H 0.266 0.734 36 H 0.109 0.891 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.625 16.775 -6.480 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.193 4.193 3 C -0.102 4.102 4 C -0.074 4.074 5 H 0.136 0.864 6 C 0.304 3.696 7 O -0.461 6.461 8 N -0.368 5.368 9 C 0.018 3.982 10 C -0.013 4.013 11 C -0.587 4.587 12 H 0.075 0.925 13 C -0.190 4.190 14 N -0.565 5.565 15 Si 0.789 3.211 16 H -0.198 1.198 17 H -0.203 1.203 18 H -0.191 1.191 19 C -0.091 4.091 20 C -0.143 4.143 21 C -0.148 4.148 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.133 4.133 25 H 0.135 0.865 26 H 0.122 0.878 27 H 0.100 0.900 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.244 0.756 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.025 0.975 34 H 0.028 0.972 35 H 0.075 0.925 36 H 0.127 0.873 37 H 0.152 0.848 38 H 0.163 0.837 39 H 0.167 0.833 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.311 16.501 -7.074 21.219 hybrid contribution 0.822 -1.020 0.378 1.364 sum -10.489 15.481 -6.696 19.862 Atomic orbital electron populations 1.24034 0.94948 1.03090 0.98959 1.22874 0.96716 0.97802 1.01886 1.20604 0.97095 0.96228 0.96321 1.20291 0.94075 0.90160 1.02830 0.86408 1.21033 0.82758 0.81991 0.83800 1.90629 1.61546 1.66797 1.27141 1.46211 1.45470 1.35472 1.09671 1.21196 0.90599 0.87500 0.98910 1.19117 0.95853 0.95272 0.91094 1.21456 1.26299 1.17739 0.93175 0.92458 1.25856 0.98444 0.99912 0.94774 1.70052 1.45103 1.42997 0.98374 0.85455 0.78950 0.78636 0.78075 1.19773 1.20345 1.19096 1.19485 0.99370 0.94456 0.95745 1.21195 0.97566 0.96753 0.98823 1.21388 0.99889 0.94101 0.99436 1.21525 0.98454 1.00656 0.93412 1.21495 0.97016 0.96086 0.99529 1.21367 1.00157 0.94675 0.97058 0.86468 0.87793 0.89978 0.88283 0.91347 0.75584 0.93551 0.94041 0.97534 0.97198 0.92489 0.87267 0.84756 0.83674 0.83340 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 14.32 67.78 0.97 -2.25 16 2 C -0.17 -4.19 9.08 25.64 0.23 -3.95 16 3 C -0.07 -1.50 4.62 29.85 0.14 -1.37 16 4 C -0.05 -1.30 2.35 -12.28 -0.03 -1.33 16 5 H 0.12 2.38 7.87 -2.39 -0.02 2.36 16 6 C 0.52 17.75 5.78 87.66 0.51 18.26 16 7 O -0.58 -24.15 15.65 -3.04 -0.05 -24.20 16 8 N -0.72 -25.93 5.55 -463.05 -2.57 -28.50 16 9 C 0.14 6.30 5.62 86.38 0.49 6.79 16 10 C 0.02 1.24 5.09 29.85 0.15 1.39 16 11 C -0.55 -31.10 9.11 25.60 0.23 -30.86 16 12 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 13 C 0.01 0.51 5.46 84.66 0.46 0.97 16 14 N -0.93 -54.57 13.29 21.45 0.28 -54.28 16 15 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 C -0.09 -2.16 4.77 -19.87 -0.09 -2.26 16 20 C -0.13 -3.24 8.86 22.27 0.20 -3.04 16 21 C -0.13 -2.80 10.05 22.27 0.22 -2.58 16 22 C -0.12 -2.22 10.05 22.27 0.22 -1.99 16 23 C -0.12 -2.16 10.05 22.27 0.22 -1.94 16 24 C -0.11 -2.25 9.67 22.27 0.22 -2.04 16 25 H 0.12 1.66 7.84 -2.91 -0.02 1.64 16 26 H 0.10 1.76 8.06 -2.91 -0.02 1.74 16 27 H 0.08 2.42 7.82 -2.91 -0.02 2.39 16 28 H 0.10 1.78 7.79 -2.39 -0.02 1.76 16 29 H 0.07 1.83 7.12 -2.38 -0.02 1.82 16 30 H 0.41 12.79 8.48 -92.71 -0.79 12.01 16 31 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.11 3.17 7.20 -2.91 -0.02 3.15 16 37 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 39 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.15 2.15 7.95 -2.91 -0.02 2.13 16 Total: -1.00 -68.37 343.11 4.06 -64.31 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.23 Total: 22.93 kcal Atomic # 6 Polarization: -30.34 SS G_CDS: 4.14 Total: -26.20 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -2.29 Total: -82.79 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.05 Total: -24.20 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -68.37 4.06 -64.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275023358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.721 kcal (2) G-P(sol) polarization free energy of solvation -68.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds