Wall clock time and date at job start Mon Mar 30 2020 01:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50703 * 119.99690 * 2 1 4 4 C 1.30996 * 120.00163 * 180.02562 * 2 1 3 5 5 C 1.50697 * 120.00130 * 354.85778 * 4 2 1 6 6 C 1.52999 * 109.47468 * 119.29422 * 5 4 2 7 7 N 1.46503 * 109.47170 * 179.97438 * 6 5 4 8 8 C 1.34770 * 120.00098 * 180.02562 * 7 6 5 9 9 O 1.21590 * 119.99841 * 359.97438 * 8 7 6 10 10 C 1.47643 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.40016 * 119.89495 * 0.24061 * 10 8 7 12 12 C 1.36318 * 120.10245 * 180.25742 * 11 10 8 13 13 C 1.40884 * 119.89389 * 359.48228 * 12 11 10 14 14 C 1.41109 * 120.10547 * 180.29691 * 13 12 11 15 15 H 1.08000 * 119.99685 * 334.05986 * 14 13 12 16 16 C 1.40219 * 120.00194 * 154.05957 * 14 13 12 17 17 N 1.30645 * 120.00084 * 336.30153 * 16 14 13 18 18 Si 1.86806 * 120.00200 * 156.30488 * 16 14 13 19 19 H 1.48500 * 109.46927 * 94.97910 * 18 16 14 20 20 H 1.48495 * 109.47227 * 214.98154 * 18 16 14 21 21 H 1.48503 * 109.46665 * 334.98287 * 18 16 14 22 22 C 1.40889 * 119.79378 * 0.27496 * 13 12 11 23 23 C 1.36320 * 119.89110 * 359.97438 * 22 13 12 24 24 H 1.09005 * 109.46803 * 264.81208 * 1 2 3 25 25 H 1.09001 * 109.47735 * 24.81025 * 1 2 3 26 26 H 1.09002 * 109.47691 * 144.81623 * 1 2 3 27 27 H 1.08999 * 109.47226 * 270.00399 * 3 2 1 28 28 H 1.08998 * 109.47051 * 30.00753 * 3 2 1 29 29 H 1.09002 * 109.46961 * 150.00526 * 3 2 1 30 30 H 1.08000 * 120.00222 * 174.84994 * 4 2 1 31 31 H 1.08999 * 109.46915 * 359.28960 * 5 4 2 32 32 H 1.09002 * 109.47238 * 239.29913 * 5 4 2 33 33 H 1.08998 * 109.46829 * 60.00316 * 6 5 4 34 34 H 1.08999 * 109.46962 * 299.99771 * 6 5 4 35 35 H 0.97006 * 119.99677 * 0.02562 * 7 6 5 36 36 H 1.07999 * 119.94888 * 0.03628 * 11 10 8 37 37 H 1.08003 * 120.05242 * 179.75238 * 12 11 10 38 38 H 0.97008 * 120.00173 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.05559 * 180.02562 * 22 13 12 40 40 H 1.08001 * 119.94330 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1620 -1.1344 -0.0005 5 6 1.4131 -2.4370 0.1159 6 6 1.6720 -3.2872 -1.1295 7 7 0.9444 -4.5538 -1.0160 8 6 1.0246 -5.4678 -2.0031 9 8 1.7004 -5.2410 -2.9882 10 6 0.2909 -6.7439 -1.8890 11 6 -0.4915 -7.0001 -0.7565 12 6 -1.1665 -8.1792 -0.6443 13 6 -1.0846 -9.1360 -1.6752 14 6 -1.7865 -10.3553 -1.5665 15 1 -2.0304 -10.7529 -0.5925 16 6 -2.1672 -11.0506 -2.7232 17 7 -2.3063 -10.4110 -3.8538 18 14 -2.4757 -12.8914 -2.6474 19 1 -3.9256 -13.1425 -2.4468 20 1 -2.0358 -13.5198 -3.9189 21 1 -1.7111 -13.4752 -1.5161 22 6 -0.3001 -8.8714 -2.8151 23 6 0.3755 -7.6917 -2.9161 24 1 -0.3633 -0.0929 1.0235 25 1 -0.3634 0.9328 -0.4312 26 1 -0.3634 -0.8399 -0.5921 27 1 2.4420 1.6199 -1.0276 28 1 1.6714 2.0647 0.5139 29 1 3.2129 1.1748 0.5138 30 1 3.2387 -1.1363 -0.0845 31 1 0.3454 -2.2357 0.2029 32 1 1.7546 -2.9747 1.0004 33 1 2.7397 -3.4886 -1.2164 34 1 1.3304 -2.7496 -2.0139 35 1 0.4050 -4.7345 -0.2303 36 1 -0.5576 -6.2641 0.0310 37 1 -1.7666 -8.3776 0.2314 38 1 -2.5701 -10.8919 -4.6539 39 1 -0.2346 -9.6017 -3.6081 40 1 0.9768 -7.4878 -3.7897 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276604519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:27 Heat of formation + Delta-G solvation = -28.196878 kcal Electronic energy + Delta-G solvation = -19515.760649 eV Core-core repulsion = 16487.375651 eV Total energy + Delta-G solvation = -3028.384998 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.10984 -37.47662 -36.90802 -34.38613 -33.87395 -31.14976 -29.99614 -29.42001 -28.01557 -26.60909 -25.32967 -22.50903 -21.73743 -20.75002 -19.66060 -17.98115 -17.51728 -16.81766 -15.72914 -15.55523 -15.30134 -14.42650 -14.24396 -14.16827 -14.00823 -13.68906 -13.19972 -13.03970 -12.70184 -12.61959 -12.22928 -12.16081 -11.95999 -11.86046 -11.76268 -11.40564 -11.30484 -11.21047 -10.97668 -10.85024 -10.61167 -10.07454 -9.52650 -9.28677 -9.01592 -8.80281 -8.56618 -7.69426 -7.57687 -7.06442 -4.57844 1.98389 2.25862 2.90051 2.96183 3.01939 3.03785 3.74847 3.83840 3.89195 4.56374 4.65464 4.77596 5.02976 5.14679 5.19684 5.29134 5.39345 5.55355 5.56070 5.61977 5.65403 5.73027 5.82160 5.92281 5.99467 6.05285 6.23466 6.30434 6.51037 6.75550 6.80728 6.83637 6.98400 7.04726 7.10949 7.44451 7.62532 7.76822 7.88413 8.05535 8.27602 8.41979 8.62698 8.75901 9.11021 9.87813 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.047625 B = 0.002805 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.781528 B = 9979.235110 C =10233.680611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.116 4.116 4 C -0.159 4.159 5 C -0.108 4.108 6 C 0.129 3.871 7 N -0.744 5.744 8 C 0.570 3.430 9 O -0.574 6.574 10 C -0.285 4.285 11 C -0.047 4.047 12 C -0.236 4.236 13 C 0.131 3.869 14 C -0.448 4.448 15 H 0.086 0.914 16 C 0.078 3.922 17 N -0.763 5.763 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.272 1.272 21 H -0.257 1.257 22 C -0.186 4.186 23 C -0.033 4.033 24 H 0.066 0.934 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.396 0.604 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.288 0.712 39 H 0.112 0.888 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.153 12.794 7.247 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.134 4.134 3 C -0.173 4.173 4 C -0.177 4.177 5 C -0.145 4.145 6 C 0.005 3.995 7 N -0.398 5.398 8 C 0.365 3.635 9 O -0.456 6.456 10 C -0.290 4.290 11 C -0.066 4.066 12 C -0.255 4.255 13 C 0.128 3.872 14 C -0.475 4.475 15 H 0.104 0.896 16 C -0.145 4.145 17 N -0.385 5.385 18 Si 0.731 3.269 19 H -0.193 1.193 20 H -0.197 1.197 21 H -0.180 1.180 22 C -0.205 4.205 23 C -0.053 4.053 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.231 0.769 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.558 12.955 6.286 14.832 hybrid contribution -0.457 -0.821 0.304 0.987 sum 3.100 12.134 6.590 14.152 Atomic orbital electron populations 1.20910 0.92392 1.02552 1.02069 1.21632 0.95888 0.95026 1.00892 1.20817 0.99544 0.94945 1.01993 1.22479 0.99540 0.93205 1.02491 1.20997 1.01000 0.94259 0.98236 1.21095 0.96891 0.84308 0.97238 1.45936 1.52498 1.17925 1.23412 1.18597 0.79982 0.83624 0.81320 1.90637 1.43509 1.79805 1.31677 1.18899 1.12755 0.96791 1.00541 1.20363 0.95225 0.96141 0.94920 1.20657 1.07480 0.95411 1.01960 1.17747 0.87921 0.91058 0.90494 1.19787 1.30041 1.03835 0.93831 0.89632 1.26092 0.92647 1.01088 0.94628 1.69777 1.29012 1.38491 1.01225 0.86296 0.79548 0.81608 0.79436 1.19257 1.19671 1.18008 1.20848 1.01204 0.97735 1.00735 1.20452 0.96194 0.92831 0.95776 0.91573 0.92074 0.91147 0.91596 0.91959 0.91983 0.87155 0.90392 0.90475 0.92143 0.92153 0.76945 0.89277 0.88472 0.90091 0.87008 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 8.99 36.00 0.32 -0.72 16 2 C -0.13 -1.24 6.05 -101.07 -0.61 -1.85 16 3 C -0.12 -0.87 10.00 36.01 0.36 -0.51 16 4 C -0.16 -1.58 9.10 -36.03 -0.33 -1.91 16 5 C -0.11 -1.14 5.46 -27.89 -0.15 -1.30 16 6 C 0.13 1.84 5.66 -4.04 -0.02 1.82 16 7 N -0.74 -12.47 5.50 -61.31 -0.34 -12.81 16 8 C 0.57 12.42 7.76 -12.42 -0.10 12.32 16 9 O -0.57 -14.23 16.32 5.29 0.09 -14.14 16 10 C -0.29 -6.61 5.89 -104.73 -0.62 -7.23 16 11 C -0.05 -1.01 9.47 -39.61 -0.38 -1.39 16 12 C -0.24 -5.47 9.73 -39.27 -0.38 -5.85 16 13 C 0.13 3.35 5.54 -106.80 -0.59 2.76 16 14 C -0.45 -11.16 9.00 -37.75 -0.34 -11.50 16 15 H 0.09 2.02 7.95 -52.49 -0.42 1.60 16 16 C 0.08 1.85 4.98 -17.31 -0.09 1.76 16 17 N -0.76 -18.76 11.42 55.56 0.63 -18.13 16 18 Si 0.91 17.37 29.62 -169.99 -5.04 12.33 16 19 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 20 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 21 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 22 C -0.19 -4.79 8.65 -39.27 -0.34 -5.13 16 23 C -0.03 -0.82 9.52 -39.61 -0.38 -1.20 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 26 H 0.07 0.66 6.54 -51.93 -0.34 0.32 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.41 8.12 -51.93 -0.42 -0.02 16 29 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 30 H 0.11 1.03 8.05 -52.49 -0.42 0.61 16 31 H 0.08 0.79 5.58 -51.93 -0.29 0.50 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.40 5.71 6.47 -40.82 -0.26 5.44 16 36 H 0.09 1.55 6.37 -52.49 -0.33 1.21 16 37 H 0.10 2.06 8.06 -52.48 -0.42 1.64 16 38 H 0.29 6.36 8.29 -40.82 -0.34 6.02 16 39 H 0.11 2.92 6.47 -52.49 -0.34 2.58 16 40 H 0.10 2.45 7.63 -52.49 -0.40 2.05 16 LS Contribution 336.42 15.07 5.07 5.07 Total: -1.00 -28.96 336.42 -8.96 -37.92 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -5.74 Total: 9.67 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -3.64 Total: -19.92 kcal Atomic # 7 Polarization: -31.23 SS G_CDS: 0.30 Total: -30.93 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.09 Total: -14.14 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.04 Total: 12.33 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.96 -8.96 -37.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276604519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.724 kcal (2) G-P(sol) polarization free energy of solvation -28.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds