Wall clock time and date at job start Mon Mar 30 2020 01:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50703 * 119.99690 * 2 1 4 4 C 1.30996 * 120.00163 * 180.02562 * 2 1 3 5 5 C 1.50697 * 120.00130 * 354.85778 * 4 2 1 6 6 C 1.52999 * 109.47468 * 119.29422 * 5 4 2 7 7 N 1.46503 * 109.47170 * 179.97438 * 6 5 4 8 8 C 1.34770 * 120.00098 * 180.02562 * 7 6 5 9 9 O 1.21590 * 119.99841 * 359.97438 * 8 7 6 10 10 C 1.47643 * 120.00037 * 180.02562 * 8 7 6 11 11 C 1.40016 * 119.89495 * 0.24061 * 10 8 7 12 12 C 1.36318 * 120.10245 * 180.25742 * 11 10 8 13 13 C 1.40884 * 119.89389 * 359.48228 * 12 11 10 14 14 C 1.41109 * 120.10547 * 180.29691 * 13 12 11 15 15 H 1.08000 * 119.99685 * 334.05986 * 14 13 12 16 16 C 1.40219 * 120.00194 * 154.05957 * 14 13 12 17 17 N 1.30645 * 120.00084 * 336.30153 * 16 14 13 18 18 Si 1.86806 * 120.00200 * 156.30488 * 16 14 13 19 19 H 1.48500 * 109.46927 * 94.97910 * 18 16 14 20 20 H 1.48495 * 109.47227 * 214.98154 * 18 16 14 21 21 H 1.48503 * 109.46665 * 334.98287 * 18 16 14 22 22 C 1.40889 * 119.79378 * 0.27496 * 13 12 11 23 23 C 1.36320 * 119.89110 * 359.97438 * 22 13 12 24 24 H 1.09005 * 109.46803 * 264.81208 * 1 2 3 25 25 H 1.09001 * 109.47735 * 24.81025 * 1 2 3 26 26 H 1.09002 * 109.47691 * 144.81623 * 1 2 3 27 27 H 1.08999 * 109.47226 * 270.00399 * 3 2 1 28 28 H 1.08998 * 109.47051 * 30.00753 * 3 2 1 29 29 H 1.09002 * 109.46961 * 150.00526 * 3 2 1 30 30 H 1.08000 * 120.00222 * 174.84994 * 4 2 1 31 31 H 1.08999 * 109.46915 * 359.28960 * 5 4 2 32 32 H 1.09002 * 109.47238 * 239.29913 * 5 4 2 33 33 H 1.08998 * 109.46829 * 60.00316 * 6 5 4 34 34 H 1.08999 * 109.46962 * 299.99771 * 6 5 4 35 35 H 0.97006 * 119.99677 * 0.02562 * 7 6 5 36 36 H 1.07999 * 119.94888 * 0.03628 * 11 10 8 37 37 H 1.08003 * 120.05242 * 179.75238 * 12 11 10 38 38 H 0.97008 * 120.00173 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.05559 * 180.02562 * 22 13 12 40 40 H 1.08001 * 119.94330 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3052 0.0000 4 6 2.1620 -1.1344 -0.0005 5 6 1.4131 -2.4370 0.1159 6 6 1.6720 -3.2872 -1.1295 7 7 0.9444 -4.5538 -1.0160 8 6 1.0246 -5.4678 -2.0031 9 8 1.7004 -5.2410 -2.9882 10 6 0.2909 -6.7439 -1.8890 11 6 -0.4915 -7.0001 -0.7565 12 6 -1.1665 -8.1792 -0.6443 13 6 -1.0846 -9.1360 -1.6752 14 6 -1.7865 -10.3553 -1.5665 15 1 -2.0304 -10.7529 -0.5925 16 6 -2.1672 -11.0506 -2.7232 17 7 -2.3063 -10.4110 -3.8538 18 14 -2.4757 -12.8914 -2.6474 19 1 -3.9256 -13.1425 -2.4468 20 1 -2.0358 -13.5198 -3.9189 21 1 -1.7111 -13.4752 -1.5161 22 6 -0.3001 -8.8714 -2.8151 23 6 0.3755 -7.6917 -2.9161 24 1 -0.3633 -0.0929 1.0235 25 1 -0.3634 0.9328 -0.4312 26 1 -0.3634 -0.8399 -0.5921 27 1 2.4420 1.6199 -1.0276 28 1 1.6714 2.0647 0.5139 29 1 3.2129 1.1748 0.5138 30 1 3.2387 -1.1363 -0.0845 31 1 0.3454 -2.2357 0.2029 32 1 1.7546 -2.9747 1.0004 33 1 2.7397 -3.4886 -1.2164 34 1 1.3304 -2.7496 -2.0139 35 1 0.4050 -4.7345 -0.2303 36 1 -0.5576 -6.2641 0.0310 37 1 -1.7666 -8.3776 0.2314 38 1 -2.5701 -10.8919 -4.6539 39 1 -0.2346 -9.6017 -3.6081 40 1 0.9768 -7.4878 -3.7897 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276604519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:26 Heat of formation + Delta-G solvation = -43.466006 kcal Electronic energy + Delta-G solvation = -19516.422768 eV Core-core repulsion = 16487.375651 eV Total energy + Delta-G solvation = -3029.047118 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.78550 -38.98407 -38.06121 -35.77063 -35.65253 -32.48960 -31.72666 -31.08056 -28.66321 -28.05058 -26.64887 -23.89708 -23.22837 -22.49290 -21.32868 -19.35963 -18.81998 -18.38984 -17.13455 -16.93790 -16.70072 -15.76357 -15.68061 -15.51730 -15.16139 -14.83703 -14.74410 -14.37494 -14.26697 -13.99401 -13.67373 -13.25432 -13.21340 -12.96152 -12.84282 -12.80313 -12.66709 -12.46985 -12.34095 -12.14852 -11.81858 -11.63990 -11.36113 -11.07454 -10.73913 -10.07341 -9.58127 -9.57232 -9.43127 -8.84487 -6.46706 0.44738 1.14672 1.24448 1.36575 1.42138 1.55077 2.10239 2.17627 2.43416 2.76945 3.67926 3.89632 4.04911 4.11886 4.19171 4.31354 4.37063 4.40634 4.48427 4.59287 4.72003 4.79588 4.85946 4.95350 4.96182 5.01550 5.07422 5.08578 5.16248 5.17822 5.24731 5.26063 5.56679 5.59394 5.78629 5.80580 5.93239 6.01335 6.04206 6.19730 6.54327 6.73996 6.75621 6.89243 7.45297 8.13150 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.047625 B = 0.002805 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.781528 B = 9979.235110 C =10233.680611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.131 4.131 3 C -0.118 4.118 4 C -0.177 4.177 5 C -0.095 4.095 6 C 0.129 3.871 7 N -0.723 5.723 8 C 0.568 3.432 9 O -0.612 6.612 10 C -0.297 4.297 11 C -0.035 4.035 12 C -0.247 4.247 13 C 0.103 3.897 14 C -0.475 4.475 15 H 0.094 0.906 16 C 0.038 3.962 17 N -0.798 5.798 18 Si 0.984 3.016 19 H -0.257 1.257 20 H -0.267 1.267 21 H -0.254 1.254 22 C -0.206 4.206 23 C -0.048 4.048 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.410 0.590 36 H 0.136 0.864 37 H 0.118 0.882 38 H 0.296 0.704 39 H 0.095 0.905 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.536 13.550 9.265 16.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.131 4.131 3 C -0.175 4.175 4 C -0.196 4.196 5 C -0.132 4.132 6 C 0.005 3.995 7 N -0.376 5.376 8 C 0.362 3.638 9 O -0.496 6.496 10 C -0.301 4.301 11 C -0.053 4.053 12 C -0.266 4.266 13 C 0.100 3.900 14 C -0.502 4.502 15 H 0.112 0.888 16 C -0.182 4.182 17 N -0.421 5.421 18 Si 0.804 3.196 19 H -0.181 1.181 20 H -0.192 1.192 21 H -0.177 1.177 22 C -0.226 4.226 23 C -0.067 4.067 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.131 0.869 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.247 0.753 36 H 0.154 0.846 37 H 0.136 0.864 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.930 13.748 8.349 16.349 hybrid contribution -0.253 -0.914 -0.322 1.001 sum 2.678 12.834 8.027 15.373 Atomic orbital electron populations 1.20959 0.91953 1.02690 1.02638 1.21920 0.96444 0.95549 0.99196 1.20868 0.99831 0.94355 1.02419 1.22482 0.99788 0.93065 1.04252 1.20905 1.01774 0.93981 0.96513 1.21240 0.96001 0.83313 0.98909 1.45755 1.51760 1.17673 1.22383 1.18469 0.79570 0.83974 0.81816 1.90616 1.45082 1.80526 1.33420 1.19163 1.13167 0.97152 1.00650 1.20709 0.93171 0.96396 0.95051 1.20947 1.08031 0.95535 1.02076 1.18117 0.88411 0.92289 0.91163 1.20110 1.30748 1.04459 0.94850 0.88806 1.27010 0.91742 1.05670 0.93786 1.69818 1.29495 1.40630 1.02148 0.85155 0.79800 0.75198 0.79466 1.18107 1.19193 1.17688 1.20775 1.02660 0.98008 1.01135 1.20524 0.96395 0.93418 0.96390 0.90518 0.91170 0.92045 0.91327 0.90805 0.91455 0.86901 0.89483 0.89299 0.92897 0.93370 0.75251 0.84622 0.86449 0.89242 0.88677 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.99 71.23 0.64 -1.21 16 2 C -0.13 -2.13 6.05 -16.48 -0.10 -2.23 16 3 C -0.12 -1.50 10.00 71.24 0.71 -0.79 16 4 C -0.18 -3.19 9.10 25.65 0.23 -2.96 16 5 C -0.09 -1.79 5.46 29.85 0.16 -1.63 16 6 C 0.13 3.51 5.66 86.38 0.49 4.00 16 7 N -0.72 -22.94 5.50 -466.16 -2.57 -25.51 16 8 C 0.57 24.54 7.76 86.73 0.67 25.21 16 9 O -0.61 -30.77 16.32 -4.00 -0.07 -30.84 16 10 C -0.30 -13.73 5.89 -19.93 -0.12 -13.84 16 11 C -0.03 -1.42 9.47 22.25 0.21 -1.21 16 12 C -0.25 -11.20 9.73 22.47 0.22 -10.98 16 13 C 0.10 5.37 5.54 -21.28 -0.12 5.25 16 14 C -0.47 -23.85 9.00 23.46 0.21 -23.64 16 15 H 0.09 4.39 7.95 -2.91 -0.02 4.37 16 16 C 0.04 1.79 4.98 85.35 0.42 2.22 16 17 N -0.80 -40.09 11.42 21.87 0.25 -39.84 16 18 Si 0.98 35.30 29.62 68.60 2.03 37.33 16 19 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 20 H -0.27 -9.30 7.11 99.48 0.71 -8.60 16 21 H -0.25 -8.89 7.11 99.48 0.71 -8.18 16 22 C -0.21 -11.06 8.65 22.47 0.19 -10.86 16 23 C -0.05 -2.46 9.52 22.25 0.21 -2.25 16 24 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 26 H 0.06 1.02 6.54 -2.39 -0.02 1.01 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 29 H 0.07 0.79 8.07 -2.39 -0.02 0.77 16 30 H 0.11 1.94 8.05 -2.91 -0.02 1.92 16 31 H 0.09 1.51 5.58 -2.39 -0.01 1.50 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.41 10.53 6.47 -92.70 -0.60 9.93 16 36 H 0.14 4.18 6.37 -2.91 -0.02 4.16 16 37 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 38 H 0.30 13.32 8.29 -92.70 -0.77 12.55 16 39 H 0.10 5.27 6.47 -2.91 -0.02 5.25 16 40 H 0.09 4.68 7.63 -2.91 -0.02 4.66 16 Total: -1.00 -64.01 336.42 4.14 -59.87 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: 0.44 Total: 33.92 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 4.05 Total: -34.93 kcal Atomic # 7 Polarization: -63.04 SS G_CDS: -2.32 Total: -65.35 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.07 Total: -30.84 kcal Atomic # 14 Polarization: 35.30 SS G_CDS: 2.03 Total: 37.33 kcal Total: -64.01 4.14 -59.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276604519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.402 kcal (2) G-P(sol) polarization free energy of solvation -64.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds