Wall clock time and date at job start Mon Mar 30 2020 01:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.50700 * 120.00032 * 2 1 4 4 C 1.30998 * 120.00219 * 179.97438 * 2 1 3 5 5 C 1.50701 * 119.99654 * 354.45239 * 4 2 1 6 6 C 1.52996 * 109.47187 * 121.40830 * 5 4 2 7 7 N 1.46499 * 109.47354 * 179.97438 * 6 5 4 8 8 C 1.34776 * 120.00398 * 179.97438 * 7 6 5 9 9 O 1.21543 * 120.00025 * 0.02562 * 8 7 6 10 10 C 1.47886 * 119.99975 * 179.97438 * 8 7 6 11 11 C 1.39917 * 120.02599 * 359.97438 * 10 8 7 12 12 C 1.38336 * 120.35936 * 180.02562 * 11 10 8 13 13 C 1.37751 * 120.40775 * 359.97438 * 12 11 10 14 14 C 1.40748 * 120.04441 * 0.02562 * 13 12 11 15 15 C 1.41437 * 120.18180 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99601 * 26.08635 * 15 14 13 17 17 C 1.39933 * 119.99947 * 206.08418 * 15 14 13 18 18 N 1.30824 * 120.00630 * 17.38686 * 17 15 14 19 19 Si 1.86806 * 119.99886 * 197.37990 * 17 15 14 20 20 H 1.48501 * 109.47116 * 94.96909 * 19 17 15 21 21 H 1.48496 * 109.47328 * 214.97413 * 19 17 15 22 22 H 1.48501 * 109.46908 * 334.97289 * 19 17 15 23 23 C 1.38994 * 120.02455 * 179.97438 * 10 8 7 24 24 H 1.09000 * 109.47311 * 264.39187 * 1 2 3 25 25 H 1.09001 * 109.46719 * 24.39065 * 1 2 3 26 26 H 1.09002 * 109.46634 * 144.38821 * 1 2 3 27 27 H 1.09003 * 109.47351 * 270.00022 * 3 2 1 28 28 H 1.09001 * 109.47282 * 29.99222 * 3 2 1 29 29 H 1.09003 * 109.47443 * 150.00252 * 3 2 1 30 30 H 1.08003 * 120.00342 * 174.44897 * 4 2 1 31 31 H 1.08997 * 109.47367 * 1.39985 * 5 4 2 32 32 H 1.09001 * 109.46843 * 241.40423 * 5 4 2 33 33 H 1.09005 * 109.47673 * 59.99698 * 6 5 4 34 34 H 1.09001 * 109.46897 * 299.99560 * 6 5 4 35 35 H 0.97006 * 119.99504 * 359.97438 * 7 6 5 36 36 H 1.08001 * 119.82323 * 359.97438 * 11 10 8 37 37 H 1.07994 * 119.79362 * 180.02562 * 12 11 10 38 38 H 1.08004 * 119.97640 * 180.02562 * 13 12 11 39 39 H 0.96996 * 120.00700 * 179.97438 * 18 17 15 40 40 H 1.08005 * 120.19961 * 359.70877 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1621 -1.1345 0.0005 5 6 1.4138 -2.4364 0.1273 6 6 1.7070 -3.3139 -1.0913 7 7 0.9801 -4.5798 -0.9678 8 6 1.0873 -5.5153 -1.9321 9 8 1.7874 -5.3090 -2.9039 10 6 0.3540 -6.7935 -1.8070 11 6 -0.4509 -7.0323 -0.6877 12 6 -1.1395 -8.2256 -0.5635 13 6 -1.0414 -9.1922 -1.5401 14 6 -0.2366 -8.9699 -2.6732 15 6 -0.1342 -9.9601 -3.6779 16 1 -0.9370 -10.6681 -3.8221 17 6 1.0071 -10.0223 -4.4852 18 7 2.1050 -9.4154 -4.1139 19 14 0.9632 -10.9723 -6.0930 20 1 0.6566 -10.0422 -7.2093 21 1 2.2840 -11.6092 -6.3279 22 1 -0.0859 -12.0207 -6.0200 23 6 0.4637 -7.7584 -2.8014 24 1 -0.3634 -0.1004 1.0227 25 1 -0.3633 0.9360 -0.4244 26 1 -0.3633 -0.8355 -0.5984 27 1 2.4422 1.6198 -1.0277 28 1 1.6714 2.0648 0.5137 29 1 3.2130 1.1748 0.5138 30 1 3.2383 -1.1367 -0.0900 31 1 0.3437 -2.2367 0.1823 32 1 1.7340 -2.9528 1.0322 33 1 2.7772 -3.5137 -1.1463 34 1 1.3869 -2.7975 -1.9963 35 1 0.4216 -4.7447 -0.1920 36 1 -0.5344 -6.2812 0.0839 37 1 -1.7584 -8.4002 0.3041 38 1 -1.5824 -10.1212 -1.4362 39 1 2.8962 -9.4588 -4.6732 40 1 1.0801 -7.5764 -3.6694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276612303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:30 Heat of formation + Delta-G solvation = -23.921714 kcal Electronic energy + Delta-G solvation = -19746.245135 eV Core-core repulsion = 16718.045521 eV Total energy + Delta-G solvation = -3028.199613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.20974 -37.45308 -36.85768 -34.46914 -33.69187 -31.23097 -29.82786 -29.41924 -28.02546 -26.25904 -25.21837 -22.92207 -21.69688 -20.88147 -19.56328 -18.04878 -17.62338 -16.20268 -15.74099 -15.52884 -15.04742 -14.66306 -14.41344 -14.20831 -14.16805 -13.62208 -13.16152 -13.10205 -12.63886 -12.62754 -12.47424 -12.16267 -11.97181 -11.78464 -11.63060 -11.30925 -11.17374 -11.08983 -10.86254 -10.70980 -10.48565 -10.00685 -9.67481 -9.21399 -9.04927 -8.81943 -8.62406 -7.61744 -7.50815 -6.78679 -4.40654 1.97589 2.22425 2.82060 3.08884 3.12461 3.16112 3.73929 3.89201 3.93772 4.63465 4.66226 4.76651 5.00462 5.12469 5.18495 5.28431 5.38236 5.54194 5.59879 5.61014 5.64343 5.69163 5.77062 5.80863 6.02705 6.06636 6.17156 6.27696 6.50234 6.72129 6.74780 6.89608 7.00208 7.02470 7.21747 7.38910 7.70686 7.76926 7.92823 8.11587 8.20554 8.51486 8.81497 8.84225 8.98116 10.16885 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.028840 B = 0.003333 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.635474 B = 8398.025948 C = 9098.683937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.134 4.134 3 C -0.116 4.116 4 C -0.158 4.158 5 C -0.107 4.107 6 C 0.126 3.874 7 N -0.739 5.739 8 C 0.563 3.437 9 O -0.547 6.547 10 C -0.128 4.128 11 C -0.217 4.217 12 C -0.099 4.099 13 C -0.211 4.211 14 C 0.099 3.901 15 C -0.462 4.462 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.785 5.785 19 Si 0.910 3.090 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.090 4.090 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.398 0.602 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.284 0.716 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.213 14.104 7.625 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.135 4.135 3 C -0.173 4.173 4 C -0.177 4.177 5 C -0.144 4.144 6 C 0.002 3.998 7 N -0.393 5.393 8 C 0.353 3.647 9 O -0.425 6.425 10 C -0.132 4.132 11 C -0.237 4.237 12 C -0.117 4.117 13 C -0.231 4.231 14 C 0.097 3.903 15 C -0.491 4.491 16 H 0.100 0.900 17 C -0.146 4.146 18 N -0.409 5.409 19 Si 0.735 3.265 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.110 4.110 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.234 0.766 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.438 14.296 6.845 15.856 hybrid contribution -0.072 -0.480 -0.226 0.536 sum -0.510 13.816 6.619 15.328 Atomic orbital electron populations 1.20908 0.92414 1.02518 1.02051 1.21627 0.95868 0.95029 1.00930 1.20819 0.99560 0.94922 1.02011 1.22484 0.99612 0.93164 1.02447 1.20994 1.00962 0.94118 0.98363 1.21157 0.97024 0.83989 0.97616 1.45973 1.51084 1.17093 1.25103 1.18848 0.80525 0.83819 0.81495 1.90692 1.40490 1.79907 1.31410 1.19485 1.01536 0.93831 0.98313 1.20345 1.05511 0.98830 0.99000 1.20441 0.99164 0.94185 0.97896 1.21114 1.07385 0.98917 0.95653 1.17608 0.89979 0.91627 0.91133 1.19590 1.02605 1.13354 1.13522 0.90050 1.25957 0.94612 0.95024 0.98984 1.69789 1.01142 1.34232 1.35724 0.86262 0.78598 0.80056 0.81621 1.19222 1.20209 1.18540 1.21596 1.00161 0.91259 0.98027 0.91584 0.92078 0.91170 0.91592 0.91958 0.91959 0.87091 0.90362 0.90386 0.91885 0.91936 0.76641 0.89224 0.88885 0.88592 0.90469 0.85075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 8.99 36.01 0.32 -0.69 16 2 C -0.13 -1.23 6.05 -101.06 -0.61 -1.84 16 3 C -0.12 -0.87 10.00 36.01 0.36 -0.51 16 4 C -0.16 -1.58 9.10 -36.02 -0.33 -1.91 16 5 C -0.11 -1.13 5.49 -27.88 -0.15 -1.28 16 6 C 0.13 1.81 5.66 -4.04 -0.02 1.78 16 7 N -0.74 -12.43 5.51 -61.24 -0.34 -12.77 16 8 C 0.56 12.58 7.77 -12.31 -0.10 12.49 16 9 O -0.55 -14.09 16.33 5.33 0.09 -14.00 16 10 C -0.13 -3.07 5.87 -105.04 -0.62 -3.69 16 11 C -0.22 -4.57 9.55 -38.92 -0.37 -4.94 16 12 C -0.10 -2.11 10.01 -39.72 -0.40 -2.50 16 13 C -0.21 -5.03 9.78 -38.81 -0.38 -5.41 16 14 C 0.10 2.64 5.55 -106.87 -0.59 2.05 16 15 C -0.46 -12.22 9.05 -37.73 -0.34 -12.56 16 16 H 0.08 2.04 7.90 -52.48 -0.41 1.63 16 17 C 0.07 1.87 5.13 -17.35 -0.09 1.78 16 18 N -0.78 -21.03 11.05 55.55 0.61 -20.42 16 19 Si 0.91 18.96 29.59 -169.99 -5.03 13.93 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 22 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 23 C -0.09 -2.44 8.22 -38.44 -0.32 -2.75 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 26 H 0.07 0.63 6.55 -51.93 -0.34 0.29 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.40 8.12 -51.93 -0.42 -0.02 16 29 H 0.06 0.44 8.06 -51.93 -0.42 0.02 16 30 H 0.11 1.06 8.05 -52.48 -0.42 0.63 16 31 H 0.08 0.77 5.56 -51.93 -0.29 0.48 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.40 5.71 6.49 -40.82 -0.26 5.45 16 36 H 0.09 1.55 6.38 -52.49 -0.33 1.21 16 37 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 39 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 40 H 0.13 3.84 5.86 -52.48 -0.31 3.53 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -30.11 336.19 -8.96 -39.07 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.73 Total: 9.12 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -3.63 Total: -20.00 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.28 Total: -33.18 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.09 Total: -14.00 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.11 -8.96 -39.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276612303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.146 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds