Wall clock time and date at job start Mon Mar 30 2020 01:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47041 * 2 1 4 4 C 1.52992 * 109.47331 * 239.99648 * 2 1 3 5 5 C 1.53000 * 109.46829 * 119.99279 * 2 1 3 6 6 H 1.08998 * 110.38754 * 301.22270 * 5 2 1 7 7 C 1.53755 * 110.42534 * 178.70483 * 5 2 1 8 8 N 1.46533 * 105.19347 * 241.24423 * 7 5 2 9 9 C 1.34781 * 124.93785 * 180.02562 * 8 7 5 10 10 O 1.21747 * 119.99660 * 184.84269 * 9 8 7 11 11 C 1.46165 * 120.00156 * 4.84943 * 9 8 7 12 12 H 1.08007 * 119.99952 * 352.05918 * 11 9 8 13 13 C 1.40119 * 120.00102 * 172.05684 * 11 9 8 14 14 N 1.30637 * 120.00244 * 166.31127 * 13 11 9 15 15 Si 1.86798 * 119.99954 * 346.31064 * 13 11 9 16 16 H 1.48495 * 109.47379 * 85.29217 * 15 13 11 17 17 H 1.48506 * 109.47056 * 205.29165 * 15 13 11 18 18 H 1.48501 * 109.47358 * 325.28881 * 15 13 11 19 19 C 1.39427 * 110.12186 * 359.97438 * 8 7 5 20 20 C 1.39788 * 129.33676 * 179.97438 * 19 8 7 21 21 C 1.37783 * 120.27045 * 180.02562 * 20 19 8 22 22 C 1.38350 * 120.24146 * 0.02562 * 21 20 19 23 23 C 1.38279 * 119.84891 * 0.25052 * 22 21 20 24 24 C 1.38124 * 120.15575 * 359.49543 * 23 22 21 25 25 H 1.09005 * 109.47026 * 291.67437 * 1 2 3 26 26 H 1.09001 * 109.46596 * 51.67216 * 1 2 3 27 27 H 1.08997 * 109.46988 * 171.67130 * 1 2 3 28 28 H 1.09002 * 109.46863 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47045 * 299.99919 * 3 2 1 30 30 H 1.09005 * 109.47014 * 59.99847 * 3 2 1 31 31 H 1.08998 * 109.47147 * 300.00212 * 4 2 1 32 32 H 1.09000 * 109.47199 * 60.00427 * 4 2 1 33 33 H 1.09002 * 109.47091 * 180.02562 * 4 2 1 34 34 H 1.08994 * 110.29692 * 0.17000 * 7 5 2 35 35 H 1.08999 * 110.29942 * 122.22115 * 7 5 2 36 36 H 0.97000 * 120.00323 * 180.02562 * 14 13 11 37 37 H 1.07997 * 119.86868 * 0.02562 * 20 19 8 38 38 H 1.08003 * 119.88189 * 180.02562 * 21 20 19 39 39 H 1.08000 * 120.07694 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.92016 * 179.74964 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7211 1.2494 6 1 1.6672 -0.2316 2.1491 7 6 3.5770 -0.7622 1.2554 8 7 3.9231 -2.1859 1.2372 9 6 5.1791 -2.6750 1.2364 10 8 5.3655 -3.8735 1.1316 11 6 6.3172 -1.7665 1.3615 12 1 6.1620 -0.6982 1.3255 13 6 7.6097 -2.2814 1.5280 14 7 8.6477 -1.5035 1.3732 15 14 7.8485 -4.0801 1.9716 16 1 7.8417 -4.9004 0.7337 17 1 9.1479 -4.2494 2.6704 18 1 6.7458 -4.5207 2.8634 19 6 2.7643 -2.9612 1.2221 20 6 2.6291 -4.3523 1.2020 21 6 1.3776 -4.9284 1.1888 22 6 0.2448 -4.1341 1.1948 23 6 0.3699 -2.7571 1.2089 24 6 1.6220 -2.1742 1.2275 25 1 -0.3633 0.3796 0.9551 26 1 -0.3632 0.6373 -0.8062 27 1 -0.3633 -1.0168 -0.1489 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.1301 -0.7217 -1.2488 34 1 3.9720 -0.2657 0.3692 35 1 3.9643 -0.2889 2.1576 36 1 9.5425 -1.8600 1.4881 37 1 3.5092 -4.9782 1.1968 38 1 1.2804 -6.0040 1.1737 39 1 -0.7349 -4.5885 1.1840 40 1 -0.5135 -2.1359 1.2095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277868597.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:45 Heat of formation + Delta-G solvation = -27.134103 kcal Electronic energy + Delta-G solvation = -21848.891340 eV Core-core repulsion = 18820.552427 eV Total energy + Delta-G solvation = -3028.338913 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.79653 -37.60912 -36.99461 -34.77469 -33.03067 -30.86188 -29.51885 -28.59808 -27.09250 -26.87160 -26.55947 -22.96440 -22.61496 -21.11470 -19.48508 -18.45517 -17.04687 -16.14042 -15.87855 -15.50458 -15.23353 -14.80669 -14.05161 -13.96596 -13.69357 -13.40776 -13.37669 -12.57941 -12.45638 -12.35561 -12.07415 -12.03192 -11.93188 -11.72004 -11.65768 -11.44590 -11.32994 -11.05014 -10.87190 -10.68243 -10.41257 -10.34220 -10.03567 -9.75296 -9.36828 -9.15401 -8.30907 -8.06046 -6.99042 -6.83012 -5.04358 1.85064 1.95699 3.33108 3.39030 3.60472 3.92251 3.98669 4.33667 4.42290 4.75353 4.85014 4.90679 5.12365 5.27509 5.36649 5.41917 5.51901 5.61268 5.66661 5.71015 5.78603 5.85059 5.88748 6.00408 6.03891 6.06247 6.14141 6.16416 6.23667 6.31794 6.41369 6.47019 6.50985 6.61227 6.70297 6.90598 7.05942 7.12135 7.23460 7.57386 7.78090 8.17888 8.49168 8.88222 9.79098 10.16565 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019604 B = 0.007192 C = 0.005537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.951643 B = 3892.444233 C = 5055.943134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.054 4.054 3 C -0.145 4.145 4 C -0.142 4.142 5 C -0.043 4.043 6 H 0.086 0.914 7 C 0.117 3.883 8 N -0.557 5.557 9 C 0.547 3.453 10 O -0.599 6.599 11 C -0.520 4.520 12 H 0.090 0.910 13 C 0.104 3.896 14 N -0.811 5.811 15 Si 0.967 3.033 16 H -0.275 1.275 17 H -0.318 1.318 18 H -0.264 1.264 19 C 0.188 3.812 20 C -0.151 4.151 21 C -0.093 4.093 22 C -0.176 4.176 23 C -0.078 4.078 24 C -0.154 4.154 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.286 0.714 37 H 0.138 0.862 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.712 3.359 -1.370 15.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.055 4.055 3 C -0.202 4.202 4 C -0.200 4.200 5 C -0.061 4.061 6 H 0.104 0.896 7 C -0.006 4.006 8 N -0.276 5.276 9 C 0.361 3.639 10 O -0.491 6.491 11 C -0.554 4.554 12 H 0.108 0.892 13 C -0.117 4.117 14 N -0.439 5.439 15 Si 0.798 3.202 16 H -0.201 1.201 17 H -0.249 1.249 18 H -0.189 1.189 19 C 0.088 3.912 20 C -0.173 4.173 21 C -0.112 4.112 22 C -0.196 4.196 23 C -0.096 4.096 24 C -0.158 4.158 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.155 0.845 38 H 0.134 0.866 39 H 0.132 0.868 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.183 2.932 -1.446 14.555 hybrid contribution 0.261 -0.550 0.169 0.632 sum -13.922 2.381 -1.277 14.182 Atomic orbital electron populations 1.22027 0.94688 1.02221 1.01234 1.20467 0.95495 0.94898 0.94598 1.21953 1.01712 0.95087 1.01491 1.21913 1.01644 1.00372 0.96032 1.20764 0.94492 0.92629 0.98260 0.89607 1.22003 0.93176 0.82648 1.02730 1.45850 1.04416 1.05717 1.71599 1.18243 0.80657 0.87920 0.77124 1.90202 1.82451 1.17636 1.58780 1.20688 0.89112 0.94984 1.50633 0.89157 1.25813 0.94572 1.01680 0.89609 1.69538 0.99846 1.39061 1.35477 0.85204 0.74302 0.80773 0.79894 1.20077 1.24898 1.18892 1.18585 0.86615 0.92044 0.93946 1.21025 0.98485 0.92790 1.04959 1.20811 0.91993 0.99158 0.99203 1.20777 0.97897 0.93388 1.07510 1.20317 0.95215 0.94348 0.99741 1.19869 0.92751 0.94338 1.08867 0.92842 0.92980 0.91731 0.91996 0.92710 0.92657 0.92366 0.93158 0.92192 0.90235 0.90803 0.90339 0.84458 0.86621 0.86844 0.86485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 7.64 37.16 0.28 -1.26 16 2 C -0.05 -0.69 0.55 -154.51 -0.08 -0.77 16 3 C -0.15 -1.63 8.23 37.16 0.31 -1.32 16 4 C -0.14 -2.02 7.91 37.15 0.29 -1.73 16 5 C -0.04 -0.64 2.42 -91.12 -0.22 -0.86 16 6 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 7 C 0.12 2.13 4.80 -3.63 -0.02 2.11 16 8 N -0.56 -12.54 3.12 -114.54 -0.36 -12.90 16 9 C 0.55 14.60 7.45 -13.08 -0.10 14.50 16 10 O -0.60 -17.15 10.56 5.15 0.05 -17.09 16 11 C -0.52 -14.35 9.55 -35.70 -0.34 -14.69 16 12 H 0.09 2.46 7.35 -52.48 -0.39 2.08 16 13 C 0.10 2.88 5.52 -17.35 -0.10 2.79 16 14 N -0.81 -22.27 13.92 55.55 0.77 -21.49 16 15 Si 0.97 24.95 25.81 -169.99 -4.39 20.57 16 16 H -0.27 -7.31 7.11 56.52 0.40 -6.91 16 17 H -0.32 -7.72 7.11 56.52 0.40 -7.32 16 18 H -0.26 -7.16 6.75 56.52 0.38 -6.78 16 19 C 0.19 3.89 6.62 -83.65 -0.55 3.33 16 20 C -0.15 -3.08 9.46 -39.17 -0.37 -3.45 16 21 C -0.09 -1.53 10.02 -39.71 -0.40 -1.93 16 22 C -0.18 -2.56 10.06 -39.52 -0.40 -2.96 16 23 C -0.08 -1.14 8.64 -39.61 -0.34 -1.48 16 24 C -0.15 -2.59 4.10 -104.23 -0.43 -3.02 16 25 H 0.05 0.52 8.13 -51.93 -0.42 0.10 16 26 H 0.05 0.50 8.13 -51.93 -0.42 0.08 16 27 H 0.06 0.72 5.37 -51.93 -0.28 0.44 16 28 H 0.06 0.75 6.58 -51.93 -0.34 0.41 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.91 7.17 -51.93 -0.37 0.54 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.97 6.43 -51.93 -0.33 0.63 16 34 H 0.08 1.43 5.07 -51.93 -0.26 1.16 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.29 7.19 8.29 -40.82 -0.34 6.86 16 37 H 0.14 3.14 6.28 -52.49 -0.33 2.81 16 38 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 39 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.12 1.40 6.24 -52.49 -0.33 1.07 16 LS Contribution 309.19 15.07 4.66 4.66 Total: -1.00 -30.34 309.19 -7.31 -37.65 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.59 Total: -0.66 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -2.46 Total: -10.73 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.42 Total: -34.40 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.05 Total: -17.09 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -4.39 Total: 20.57 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.34 -7.31 -37.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277868597.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.517 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds