Wall clock time and date at job start Mon Mar 30 2020 01:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.47041 * 2 1 4 4 C 1.52992 * 109.47331 * 239.99648 * 2 1 3 5 5 C 1.53000 * 109.46829 * 119.99279 * 2 1 3 6 6 H 1.08998 * 110.38754 * 301.22270 * 5 2 1 7 7 C 1.53755 * 110.42534 * 178.70483 * 5 2 1 8 8 N 1.46533 * 105.19347 * 241.24423 * 7 5 2 9 9 C 1.34781 * 124.93785 * 180.02562 * 8 7 5 10 10 O 1.21747 * 119.99660 * 184.84269 * 9 8 7 11 11 C 1.46165 * 120.00156 * 4.84943 * 9 8 7 12 12 H 1.08007 * 119.99952 * 352.05918 * 11 9 8 13 13 C 1.40119 * 120.00102 * 172.05684 * 11 9 8 14 14 N 1.30637 * 120.00244 * 166.31127 * 13 11 9 15 15 Si 1.86798 * 119.99954 * 346.31064 * 13 11 9 16 16 H 1.48495 * 109.47379 * 85.29217 * 15 13 11 17 17 H 1.48506 * 109.47056 * 205.29165 * 15 13 11 18 18 H 1.48501 * 109.47358 * 325.28881 * 15 13 11 19 19 C 1.39427 * 110.12186 * 359.97438 * 8 7 5 20 20 C 1.39788 * 129.33676 * 179.97438 * 19 8 7 21 21 C 1.37783 * 120.27045 * 180.02562 * 20 19 8 22 22 C 1.38350 * 120.24146 * 0.02562 * 21 20 19 23 23 C 1.38279 * 119.84891 * 0.25052 * 22 21 20 24 24 C 1.38124 * 120.15575 * 359.49543 * 23 22 21 25 25 H 1.09005 * 109.47026 * 291.67437 * 1 2 3 26 26 H 1.09001 * 109.46596 * 51.67216 * 1 2 3 27 27 H 1.08997 * 109.46988 * 171.67130 * 1 2 3 28 28 H 1.09002 * 109.46863 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47045 * 299.99919 * 3 2 1 30 30 H 1.09005 * 109.47014 * 59.99847 * 3 2 1 31 31 H 1.08998 * 109.47147 * 300.00212 * 4 2 1 32 32 H 1.09000 * 109.47199 * 60.00427 * 4 2 1 33 33 H 1.09002 * 109.47091 * 180.02562 * 4 2 1 34 34 H 1.08994 * 110.29692 * 0.17000 * 7 5 2 35 35 H 1.08999 * 110.29942 * 122.22115 * 7 5 2 36 36 H 0.97000 * 120.00323 * 180.02562 * 14 13 11 37 37 H 1.07997 * 119.86868 * 0.02562 * 20 19 8 38 38 H 1.08003 * 119.88189 * 180.02562 * 21 20 19 39 39 H 1.08000 * 120.07694 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.92016 * 179.74964 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0400 -0.7211 1.2494 6 1 1.6672 -0.2316 2.1491 7 6 3.5770 -0.7622 1.2554 8 7 3.9231 -2.1859 1.2372 9 6 5.1791 -2.6750 1.2364 10 8 5.3655 -3.8735 1.1316 11 6 6.3172 -1.7665 1.3615 12 1 6.1620 -0.6982 1.3255 13 6 7.6097 -2.2814 1.5280 14 7 8.6477 -1.5035 1.3732 15 14 7.8485 -4.0801 1.9716 16 1 7.8417 -4.9004 0.7337 17 1 9.1479 -4.2494 2.6704 18 1 6.7458 -4.5207 2.8634 19 6 2.7643 -2.9612 1.2221 20 6 2.6291 -4.3523 1.2020 21 6 1.3776 -4.9284 1.1888 22 6 0.2448 -4.1341 1.1948 23 6 0.3699 -2.7571 1.2089 24 6 1.6220 -2.1742 1.2275 25 1 -0.3633 0.3796 0.9551 26 1 -0.3632 0.6373 -0.8062 27 1 -0.3633 -1.0168 -0.1489 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.1301 -0.7217 -1.2488 34 1 3.9720 -0.2657 0.3692 35 1 3.9643 -0.2889 2.1576 36 1 9.5425 -1.8600 1.4881 37 1 3.5092 -4.9782 1.1968 38 1 1.2804 -6.0040 1.1737 39 1 -0.7349 -4.5885 1.1840 40 1 -0.5135 -2.1359 1.2095 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277868597.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:44 Heat of formation + Delta-G solvation = -44.653751 kcal Electronic energy + Delta-G solvation = -21849.651049 eV Core-core repulsion = 18820.552427 eV Total energy + Delta-G solvation = -3029.098622 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.21816 -39.42092 -38.21678 -36.33421 -35.16604 -32.20865 -31.06023 -29.87907 -28.59950 -28.15302 -27.74348 -24.43639 -24.09867 -22.43243 -21.21130 -19.58270 -18.96487 -18.01262 -17.47297 -16.96165 -16.57413 -16.46064 -15.36168 -15.33134 -15.04680 -14.92984 -14.78696 -14.48781 -14.02768 -13.84894 -13.48436 -13.38916 -13.28292 -13.20198 -12.91118 -12.78184 -12.64374 -12.44521 -12.29020 -12.09549 -11.81047 -11.57651 -11.40239 -11.33729 -11.16707 -10.92755 -10.11800 -9.61854 -8.97345 -8.57209 -7.17619 0.50661 0.55653 1.23352 1.28361 1.48946 1.95843 2.18746 2.47369 2.89849 3.21554 3.55339 3.59720 3.84273 4.06147 4.18546 4.23395 4.30554 4.44082 4.48226 4.55858 4.67755 4.74323 4.76812 4.82570 4.89957 4.92332 4.98711 5.01666 5.12763 5.16489 5.22780 5.29117 5.40929 5.45038 5.51437 5.55517 5.62512 5.68608 5.72646 5.78489 6.05902 6.30350 6.48465 6.93128 7.75460 8.07656 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019604 B = 0.007192 C = 0.005537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.951643 B = 3892.444233 C = 5055.943134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.035 4.035 6 H 0.110 0.890 7 C 0.112 3.888 8 N -0.568 5.568 9 C 0.543 3.457 10 O -0.629 6.629 11 C -0.541 4.541 12 H 0.084 0.916 13 C 0.076 3.924 14 N -0.828 5.828 15 Si 1.010 2.990 16 H -0.291 1.291 17 H -0.289 1.289 18 H -0.291 1.291 19 C 0.138 3.862 20 C -0.183 4.183 21 C -0.095 4.095 22 C -0.155 4.155 23 C -0.071 4.071 24 C -0.140 4.140 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.028 0.972 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.298 0.702 37 H 0.097 0.903 38 H 0.138 0.862 39 H 0.158 0.842 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.546 4.310 -1.230 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.049 4.049 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.053 4.053 6 H 0.128 0.872 7 C -0.010 4.010 8 N -0.287 5.287 9 C 0.355 3.645 10 O -0.523 6.523 11 C -0.576 4.576 12 H 0.102 0.898 13 C -0.142 4.142 14 N -0.457 5.457 15 Si 0.842 3.158 16 H -0.218 1.218 17 H -0.218 1.218 18 H -0.218 1.218 19 C 0.040 3.960 20 C -0.205 4.205 21 C -0.114 4.114 22 C -0.174 4.174 23 C -0.089 4.089 24 C -0.144 4.144 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.156 0.844 39 H 0.176 0.824 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.042 3.906 -1.301 18.505 hybrid contribution 1.286 -0.877 0.083 1.559 sum -16.756 3.029 -1.218 17.071 Atomic orbital electron populations 1.21998 0.92133 1.02677 1.02953 1.20469 0.97358 0.94978 0.92105 1.21940 1.00619 0.94365 1.03138 1.21881 0.99617 0.99929 0.98180 1.20842 0.91595 0.92167 1.00692 0.87174 1.22200 0.96117 0.80403 1.02245 1.45641 1.03846 1.07708 1.71515 1.18209 0.82276 0.87342 0.76674 1.90170 1.83640 1.18637 1.59849 1.20844 0.90011 0.94951 1.51774 0.89803 1.26223 0.94725 1.03422 0.89868 1.69521 1.00407 1.39791 1.35981 0.84621 0.74406 0.78294 0.78476 1.21835 1.21757 1.21811 1.18937 0.87102 0.92638 0.97320 1.20992 0.99013 0.92826 1.07668 1.21084 0.91046 1.00733 0.98494 1.21313 0.98870 0.93307 1.03885 1.20819 0.95393 0.95003 0.97698 1.20163 0.92370 0.94700 1.07137 0.91062 0.91400 0.91857 0.93836 0.91158 0.90919 0.94101 0.91134 0.95328 0.90810 0.91264 0.89142 0.88504 0.84395 0.82429 0.82346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 7.64 71.98 0.55 -1.74 16 2 C -0.05 -1.10 0.55 -52.18 -0.03 -1.13 16 3 C -0.14 -2.84 8.23 71.98 0.59 -2.25 16 4 C -0.14 -3.80 7.91 71.98 0.57 -3.23 16 5 C -0.03 -0.97 2.42 -11.12 -0.03 -0.99 16 6 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 7 C 0.11 4.19 4.80 86.63 0.42 4.60 16 8 N -0.57 -26.84 3.12 -634.48 -1.98 -28.81 16 9 C 0.54 30.76 7.45 86.30 0.64 31.40 16 10 O -0.63 -38.38 10.56 -4.50 -0.05 -38.42 16 11 C -0.54 -31.39 9.55 24.79 0.24 -31.16 16 12 H 0.08 4.83 7.35 -2.91 -0.02 4.80 16 13 C 0.08 4.38 5.52 85.33 0.47 4.85 16 14 N -0.83 -46.32 13.92 21.85 0.30 -46.02 16 15 Si 1.01 53.34 25.81 68.60 1.77 55.11 16 16 H -0.29 -15.98 7.11 99.48 0.71 -15.28 16 17 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 18 H -0.29 -16.54 6.75 99.48 0.67 -15.87 16 19 C 0.14 5.82 6.62 38.42 0.25 6.07 16 20 C -0.18 -7.75 9.46 22.54 0.21 -7.54 16 21 C -0.10 -2.98 10.02 22.19 0.22 -2.76 16 22 C -0.15 -3.81 10.06 22.31 0.22 -3.58 16 23 C -0.07 -1.76 8.64 22.25 0.19 -1.57 16 24 C -0.14 -4.44 4.10 -19.61 -0.08 -4.52 16 25 H 0.07 0.95 8.13 -2.38 -0.02 0.93 16 26 H 0.07 0.94 8.13 -2.39 -0.02 0.92 16 27 H 0.06 1.05 5.37 -2.39 -0.01 1.04 16 28 H 0.04 1.02 6.58 -2.39 -0.02 1.00 16 29 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.04 1.23 7.17 -2.39 -0.02 1.22 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.03 0.94 6.43 -2.39 -0.02 0.92 16 34 H 0.07 2.79 5.07 -2.39 -0.01 2.78 16 35 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.30 15.06 8.29 -92.71 -0.77 14.29 16 37 H 0.10 4.81 6.28 -2.91 -0.02 4.79 16 38 H 0.14 3.59 8.06 -2.91 -0.02 3.56 16 39 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.16 2.70 6.24 -2.91 -0.02 2.68 16 Total: -1.00 -70.67 309.19 5.50 -65.17 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.00 Total: 6.51 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: 4.45 Total: -13.54 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -1.67 Total: -74.83 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -0.05 Total: -38.42 kcal Atomic # 14 Polarization: 53.34 SS G_CDS: 1.77 Total: 55.11 kcal Total: -70.67 5.50 -65.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277868597.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.514 kcal (2) G-P(sol) polarization free energy of solvation -70.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds