Wall clock time and date at job start Mon Mar 30 2020 02:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 120.00072 * 2 1 4 4 C 1.53001 * 109.47292 * 124.99531 * 3 2 1 5 5 H 1.08998 * 109.47156 * 305.00231 * 4 3 2 6 6 C 1.53001 * 109.47414 * 184.99759 * 4 3 2 7 7 C 1.52991 * 109.47115 * 175.00074 * 6 4 3 8 8 N 1.46503 * 109.46701 * 65.00089 * 4 3 2 9 9 C 1.34782 * 119.99901 * 205.00015 * 8 4 3 10 10 O 1.21587 * 119.99860 * 0.02562 * 9 8 4 11 11 C 1.47642 * 119.99863 * 179.97438 * 9 8 4 12 12 C 1.40008 * 119.89645 * 359.72673 * 11 9 8 13 13 C 1.36322 * 120.10364 * 179.71415 * 12 11 9 14 14 C 1.40889 * 119.89233 * 0.58159 * 13 12 11 15 15 C 1.41100 * 120.10353 * 179.67559 * 14 13 12 16 16 H 1.08005 * 120.00189 * 204.65164 * 15 14 13 17 17 C 1.40224 * 120.00388 * 24.65027 * 15 14 13 18 18 N 1.30649 * 119.99811 * 17.85959 * 17 15 14 19 19 Si 1.86797 * 120.00336 * 197.86957 * 17 15 14 20 20 H 1.48504 * 109.47546 * 89.99700 * 19 17 15 21 21 H 1.48501 * 109.47308 * 209.99794 * 19 17 15 22 22 H 1.48497 * 109.47214 * 329.99688 * 19 17 15 23 23 C 1.40889 * 119.78986 * 359.69087 * 14 13 12 24 24 C 1.36311 * 119.89454 * 0.02562 * 23 14 13 25 25 H 1.07998 * 119.99994 * 179.97438 * 1 2 3 26 26 H 1.08004 * 119.99712 * 0.02562 * 1 2 3 27 27 H 1.07990 * 119.99960 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47359 * 4.99574 * 3 2 1 29 29 H 1.09002 * 109.47080 * 244.99550 * 3 2 1 30 30 H 1.09000 * 109.46608 * 55.00329 * 6 4 3 31 31 H 1.08996 * 109.46912 * 295.00471 * 6 4 3 32 32 H 1.08996 * 109.47555 * 300.00004 * 7 6 4 33 33 H 1.09004 * 109.46901 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47174 * 60.00602 * 7 6 4 35 35 H 0.97000 * 120.00133 * 24.99621 * 8 4 3 36 36 H 1.07997 * 119.94912 * 0.02562 * 12 11 9 37 37 H 1.08001 * 120.05081 * 180.25249 * 13 12 11 38 38 H 0.97008 * 119.99763 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.04789 * 179.97438 * 23 14 13 40 40 H 1.07998 * 119.94676 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 1 2.4882 1.1470 2.1060 6 6 3.7092 2.7047 1.2553 7 6 4.5856 2.7756 2.5073 8 7 4.0546 0.2969 1.0002 9 6 4.6912 -0.2170 2.0713 10 8 4.4188 0.1790 3.1882 11 6 5.7183 -1.2617 1.8885 12 6 6.0253 -1.7210 0.6020 13 6 6.9771 -2.6813 0.4278 14 6 7.6434 -3.2204 1.5459 15 6 8.6245 -4.2194 1.3713 16 1 8.8473 -4.9041 2.1764 17 6 9.3101 -4.3234 0.1526 18 7 9.3119 -3.3196 -0.6837 19 14 10.2208 -5.8972 -0.2754 20 1 9.3058 -6.8183 -0.9964 21 1 11.3836 -5.5764 -1.1416 22 1 10.6971 -6.5483 0.9713 23 6 7.3269 -2.7591 2.8390 24 6 6.3779 -1.7944 3.0028 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8499 -0.9352 0.0004 28 1 1.3586 2.1317 0.0895 29 1 2.6214 1.4026 -0.9314 30 1 2.9467 3.4823 1.3009 31 1 4.3275 2.8535 0.3700 32 1 3.9673 2.6267 3.3925 33 1 5.0662 3.7525 2.5595 34 1 5.3480 1.9980 2.4616 35 1 4.2715 -0.0193 0.1093 36 1 5.5108 -1.3102 -0.2541 37 1 7.2161 -3.0320 -0.5653 38 1 9.7866 -3.3915 -1.5266 39 1 7.8349 -3.1697 3.6991 40 1 6.1343 -1.4404 3.9936 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281250614.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:32 Heat of formation + Delta-G solvation = -34.446176 kcal Electronic energy + Delta-G solvation = -20469.552910 eV Core-core repulsion = 17440.896922 eV Total energy + Delta-G solvation = -3028.655988 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.99450 -39.12797 -37.53896 -35.65714 -34.66920 -33.46276 -31.71773 -31.28344 -29.60341 -27.60032 -24.83428 -23.86131 -22.81860 -21.77527 -21.20523 -20.54965 -19.35519 -18.33920 -17.47568 -17.01685 -16.28659 -16.04672 -15.73041 -15.53484 -15.05572 -14.63367 -14.50160 -14.38732 -14.11921 -13.81221 -13.67199 -13.42415 -13.14027 -12.86501 -12.69425 -12.55222 -12.41573 -12.32850 -12.19752 -11.79828 -11.74808 -11.66099 -11.35531 -11.11569 -10.56199 -10.23470 -9.83455 -9.56187 -9.38536 -8.78725 -6.47715 0.47922 1.15311 1.38863 1.42156 1.43850 1.52964 2.15700 2.20605 2.49293 2.81802 3.70090 3.77935 4.02187 4.15599 4.30093 4.32266 4.32704 4.42595 4.45640 4.56208 4.68450 4.87160 4.92284 4.96528 5.03426 5.05177 5.05953 5.14534 5.17630 5.27967 5.32189 5.50174 5.59090 5.73901 5.79012 5.83824 5.90991 5.97227 6.00368 6.23905 6.54845 6.77744 6.80643 6.90580 7.56402 8.16631 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.023902 B = 0.004063 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.191402 B = 6889.231971 C = 7367.696915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.168 4.168 3 C -0.090 4.090 4 C 0.149 3.851 5 H 0.062 0.938 6 C -0.127 4.127 7 C -0.142 4.142 8 N -0.718 5.718 9 C 0.574 3.426 10 O -0.594 6.594 11 C -0.291 4.291 12 C -0.054 4.054 13 C -0.198 4.198 14 C 0.101 3.899 15 C -0.477 4.477 16 H 0.083 0.917 17 C 0.039 3.961 18 N -0.799 5.799 19 Si 0.987 3.013 20 H -0.259 1.259 21 H -0.264 1.264 22 H -0.258 1.258 23 C -0.254 4.254 24 C -0.035 4.035 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.056 0.944 34 H 0.028 0.972 35 H 0.404 0.596 36 H 0.123 0.877 37 H 0.113 0.887 38 H 0.297 0.703 39 H 0.101 0.899 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.870 6.512 -5.220 12.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.186 4.186 3 C -0.128 4.128 4 C 0.045 3.955 5 H 0.081 0.919 6 C -0.165 4.165 7 C -0.200 4.200 8 N -0.370 5.370 9 C 0.367 3.633 10 O -0.478 6.478 11 C -0.296 4.296 12 C -0.073 4.073 13 C -0.217 4.217 14 C 0.098 3.902 15 C -0.505 4.505 16 H 0.101 0.899 17 C -0.180 4.180 18 N -0.423 5.423 19 Si 0.807 3.193 20 H -0.183 1.183 21 H -0.189 1.189 22 H -0.182 1.182 23 C -0.274 4.274 24 C -0.054 4.054 25 H 0.116 0.884 26 H 0.130 0.870 27 H 0.112 0.888 28 H 0.121 0.879 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.240 0.760 36 H 0.141 0.859 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.991 6.915 -4.684 13.022 hybrid contribution 0.820 -0.941 -0.228 1.269 sum -9.171 5.974 -4.912 11.997 Atomic orbital electron populations 1.24001 0.95572 1.02688 1.00484 1.22986 0.96576 0.98577 1.00490 1.21035 0.97727 0.96323 0.97686 1.21041 0.88181 0.87155 0.99147 0.91933 1.21949 0.99812 0.96635 0.98142 1.21736 0.99774 1.00225 0.98249 1.45848 1.40686 1.41295 1.09198 1.18233 0.80401 0.80548 0.84133 1.90624 1.67687 1.63702 1.25815 1.19277 1.07942 1.07926 0.94419 1.20728 0.95994 0.95614 0.94983 1.21010 0.99380 1.02382 0.98965 1.18123 0.90238 0.90088 0.91761 1.20103 1.17116 1.13377 0.99870 0.89860 1.26900 0.96073 1.00438 0.94563 1.69767 1.32337 1.31119 1.09049 0.85116 0.77887 0.76979 0.79318 1.18305 1.18872 1.18218 1.20847 1.05345 1.04186 0.96994 1.20504 0.93569 0.94192 0.97109 0.88372 0.86963 0.88832 0.87896 0.89092 0.88779 0.91022 0.93953 0.92520 0.95275 0.75956 0.85943 0.86913 0.89216 0.88054 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.42 14.32 67.78 0.97 -2.44 16 2 C -0.17 -3.50 9.25 25.65 0.24 -3.27 16 3 C -0.09 -1.63 5.20 29.85 0.16 -1.48 16 4 C 0.15 3.79 2.24 44.99 0.10 3.89 16 5 H 0.06 1.91 7.58 -2.39 -0.02 1.89 16 6 C -0.13 -2.94 5.61 30.59 0.17 -2.77 16 7 C -0.14 -4.30 8.51 71.98 0.61 -3.69 16 8 N -0.72 -22.30 4.67 -445.57 -2.08 -24.39 16 9 C 0.57 23.56 6.33 86.73 0.55 24.11 16 10 O -0.59 -27.30 13.46 -3.99 -0.05 -27.36 16 11 C -0.29 -13.27 5.89 -19.93 -0.12 -13.38 16 12 C -0.05 -2.38 9.47 22.25 0.21 -2.17 16 13 C -0.20 -9.83 8.63 22.47 0.19 -9.64 16 14 C 0.10 5.30 5.58 -21.28 -0.12 5.18 16 15 C -0.48 -24.39 9.04 23.46 0.21 -24.18 16 16 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 17 C 0.04 1.83 5.14 85.35 0.44 2.27 16 18 N -0.80 -38.36 10.95 21.87 0.24 -38.12 16 19 Si 0.99 35.02 29.60 68.60 2.03 37.05 16 20 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 21 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 22 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 23 C -0.25 -12.81 9.73 22.47 0.22 -12.59 16 24 C -0.03 -1.68 9.52 22.25 0.21 -1.46 16 25 H 0.10 1.68 8.06 -2.91 -0.02 1.65 16 26 H 0.11 1.59 7.84 -2.91 -0.02 1.56 16 27 H 0.09 2.26 8.03 -2.92 -0.02 2.24 16 28 H 0.10 1.41 7.79 -2.39 -0.02 1.39 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.37 7.84 -2.39 -0.02 1.35 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.03 1.07 5.65 -2.39 -0.01 1.06 16 35 H 0.40 11.09 6.60 -92.71 -0.61 10.47 16 36 H 0.12 4.36 6.37 -2.91 -0.02 4.35 16 37 H 0.11 5.67 6.16 -2.91 -0.02 5.66 16 38 H 0.30 12.63 8.29 -92.70 -0.77 11.86 16 39 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 40 H 0.10 4.79 7.63 -2.91 -0.02 4.77 16 Total: -1.00 -60.56 330.86 4.60 -55.96 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: 0.42 Total: 38.46 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 4.05 Total: -41.61 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -1.84 Total: -62.51 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.05 Total: -27.36 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Total: -60.56 4.60 -55.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281250614.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.519 kcal (2) G-P(sol) polarization free energy of solvation -60.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds