Wall clock time and date at job start Mon Mar 30 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50707 * 119.99643 * 2 1 4 4 C 1.53005 * 109.46789 * 125.00253 * 3 2 1 5 5 H 1.08996 * 109.47129 * 55.00073 * 4 3 2 6 6 C 1.52999 * 109.46712 * 175.00247 * 4 3 2 7 7 C 1.52998 * 109.47168 * 184.99737 * 6 4 3 8 8 N 1.46498 * 109.46808 * 294.99905 * 4 3 2 9 9 C 1.34777 * 119.99837 * 155.00632 * 8 4 3 10 10 O 1.21589 * 119.99989 * 359.97438 * 9 8 4 11 11 C 1.47639 * 120.00325 * 180.02562 * 9 8 4 12 12 C 1.40016 * 119.89468 * 359.71834 * 11 9 8 13 13 C 1.36316 * 120.10601 * 179.76262 * 12 11 9 14 14 C 1.40885 * 119.89328 * 0.51264 * 13 12 11 15 15 C 1.41101 * 120.10265 * 179.71715 * 14 13 12 16 16 H 1.08005 * 120.00151 * 155.08731 * 15 14 13 17 17 C 1.40226 * 120.00482 * 335.08670 * 15 14 13 18 18 N 1.30653 * 119.99829 * 342.20387 * 17 15 14 19 19 Si 1.86804 * 120.00530 * 162.20605 * 17 15 14 20 20 H 1.48499 * 109.46913 * 94.65972 * 19 17 15 21 21 H 1.48493 * 109.47018 * 214.66384 * 19 17 15 22 22 H 1.48500 * 109.46511 * 334.66217 * 19 17 15 23 23 C 1.40891 * 119.79067 * 359.74920 * 14 13 12 24 24 C 1.36313 * 119.89414 * 359.97438 * 23 14 13 25 25 H 1.07999 * 120.00766 * 359.97438 * 1 2 3 26 26 H 1.08007 * 119.99450 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00766 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47162 * 5.00659 * 3 2 1 29 29 H 1.09004 * 109.47018 * 244.99901 * 3 2 1 30 30 H 1.08997 * 109.47622 * 64.99835 * 6 4 3 31 31 H 1.09001 * 109.47369 * 304.99461 * 6 4 3 32 32 H 1.09009 * 109.47074 * 59.99733 * 7 6 4 33 33 H 1.09000 * 109.47262 * 299.99983 * 7 6 4 34 34 H 1.08997 * 109.47801 * 179.97438 * 7 6 4 35 35 H 0.96999 * 120.00723 * 334.99801 * 8 4 3 36 36 H 1.08003 * 119.94611 * 0.02562 * 12 11 9 37 37 H 1.08006 * 120.05008 * 180.23206 * 13 12 11 38 38 H 0.97001 * 120.00018 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.05115 * 179.97438 * 23 14 13 40 40 H 1.07995 * 119.94849 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3331 1.1816 5 1 3.6826 0.4574 1.1403 6 6 3.8873 2.6017 1.1110 7 6 4.9418 2.5700 2.2192 8 7 2.2785 1.3223 2.4361 9 6 2.8473 0.8475 3.5620 10 8 3.9881 0.4278 3.5363 11 6 2.0848 0.8360 4.8262 12 6 0.7728 1.3243 4.8543 13 6 0.0632 1.3113 6.0181 14 6 0.6556 0.8154 7.1962 15 6 -0.0728 0.8053 8.4046 16 1 0.1800 0.0992 9.1818 17 6 -1.1251 1.7121 8.5966 18 7 -1.2183 2.7741 7.8413 19 14 -2.3936 1.4018 9.9324 20 1 -2.0019 2.1303 11.1657 21 1 -3.7220 1.8820 9.4745 22 1 -2.4650 -0.0536 10.2186 23 6 1.9780 0.3302 7.1641 24 6 2.6778 0.3420 5.9944 25 1 -0.5401 0.9352 0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3584 2.1317 0.0897 29 1 2.6212 1.4027 -0.9314 30 1 3.2495 3.4759 1.2415 31 1 4.3814 2.6540 0.1409 32 1 5.5798 1.6958 2.0888 33 1 4.4478 2.5178 3.1894 34 1 5.5493 3.4735 2.1687 35 1 1.3682 1.6569 2.4566 36 1 0.3209 1.7080 3.9515 37 1 -0.9501 1.6847 6.0379 38 1 -1.9464 3.4011 7.9738 39 1 2.4364 -0.0506 8.0648 40 1 3.6915 -0.0293 5.9688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281250615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:36 Heat of formation + Delta-G solvation = -20.770574 kcal Electronic energy + Delta-G solvation = -20559.465909 eV Core-core repulsion = 17531.402939 eV Total energy + Delta-G solvation = -3028.062970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.45221 -37.43349 -36.18772 -33.86291 -33.57634 -32.03724 -29.99559 -29.42807 -28.51329 -25.85563 -23.69418 -22.19572 -21.03271 -20.40471 -19.93576 -19.41588 -17.50939 -16.69898 -16.14648 -15.42349 -15.02061 -14.75146 -14.01602 -13.90252 -13.61714 -13.46038 -13.03245 -12.92268 -12.63889 -12.36917 -12.09064 -11.99677 -11.86145 -11.37092 -11.26508 -11.24385 -11.01405 -10.89798 -10.70431 -10.67065 -10.50350 -10.03186 -9.54474 -9.35759 -9.32081 -8.86461 -8.44019 -7.69996 -7.51921 -7.02349 -4.58677 2.26570 2.30344 2.91214 2.94980 3.01386 3.05226 3.74746 3.86916 3.91135 4.58529 4.71558 4.99985 5.14516 5.34024 5.40694 5.49377 5.59840 5.66868 5.72895 5.89753 5.92040 6.07226 6.12212 6.20400 6.21865 6.33665 6.46143 6.62870 6.74975 6.76245 6.79032 6.84199 7.01640 7.13814 7.15743 7.45363 7.68092 7.81806 7.87725 8.08950 8.31888 8.41559 8.64749 8.77121 9.16019 9.89875 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022891 B = 0.004289 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.917022 B = 6526.316076 C = 7125.202229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C -0.102 4.102 4 C 0.151 3.849 5 H 0.085 0.915 6 C -0.132 4.132 7 C -0.144 4.144 8 N -0.733 5.733 9 C 0.573 3.427 10 O -0.571 6.571 11 C -0.283 4.283 12 C -0.062 4.062 13 C -0.179 4.179 14 C 0.129 3.871 15 C -0.444 4.444 16 H 0.084 0.916 17 C 0.075 3.925 18 N -0.773 5.773 19 Si 0.912 3.088 20 H -0.267 1.267 21 H -0.273 1.273 22 H -0.257 1.257 23 C -0.239 4.239 24 C -0.023 4.023 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.107 0.893 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.395 0.605 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.286 0.714 39 H 0.097 0.903 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.396 0.328 -10.972 10.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.165 4.165 3 C -0.139 4.139 4 C 0.046 3.954 5 H 0.103 0.897 6 C -0.171 4.171 7 C -0.202 4.202 8 N -0.385 5.385 9 C 0.368 3.632 10 O -0.453 6.453 11 C -0.288 4.288 12 C -0.081 4.081 13 C -0.198 4.198 14 C 0.126 3.874 15 C -0.472 4.472 16 H 0.102 0.898 17 C -0.146 4.146 18 N -0.397 5.397 19 Si 0.735 3.265 20 H -0.192 1.192 21 H -0.198 1.198 22 H -0.181 1.181 23 C -0.259 4.259 24 C -0.042 4.042 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.230 0.770 36 H 0.106 0.894 37 H 0.137 0.863 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.065 0.259 -11.038 11.092 hybrid contribution -1.130 0.228 0.594 1.296 sum -0.064 0.487 -10.444 10.456 Atomic orbital electron populations 1.23807 0.95891 1.01766 1.01719 1.22879 0.96030 0.98294 0.99298 1.21086 0.98566 0.95903 0.98390 1.20832 0.92647 0.98672 0.83292 0.89743 1.21959 0.98022 0.97862 0.99241 1.21793 0.98342 1.00397 0.99626 1.45931 1.17611 1.66679 1.08314 1.18487 0.85785 0.75418 0.83528 1.90633 1.18823 1.49561 1.86302 1.18947 0.96882 1.19909 0.93023 1.20468 0.93335 0.97464 0.96851 1.20965 1.00403 1.06871 0.91542 1.17774 0.90086 0.86787 0.92799 1.19833 1.11458 1.14808 1.01120 0.89777 1.26086 0.97816 0.93527 0.97153 1.69750 1.28257 1.07121 1.34526 0.86230 0.79364 0.80408 0.80484 1.19249 1.19752 1.18093 1.20718 0.95478 1.12935 0.96748 1.20358 0.97627 0.94504 0.91717 0.88685 0.88638 0.87505 0.91098 0.89869 0.92181 0.91904 0.92415 0.91643 0.94230 0.77007 0.89445 0.86314 0.90298 0.88474 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.12 14.32 29.02 0.42 -1.70 16 2 C -0.15 -1.67 9.25 -36.02 -0.33 -2.00 16 3 C -0.10 -1.08 5.20 -27.88 -0.14 -1.23 16 4 C 0.15 2.06 2.24 -67.93 -0.15 1.91 16 5 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 6 C -0.13 -1.71 5.61 -26.73 -0.15 -1.86 16 7 C -0.14 -2.24 8.51 37.16 0.32 -1.92 16 8 N -0.73 -12.01 4.69 -54.81 -0.26 -12.27 16 9 C 0.57 11.85 6.33 -12.42 -0.08 11.77 16 10 O -0.57 -12.92 13.46 5.29 0.07 -12.85 16 11 C -0.28 -6.44 5.89 -104.73 -0.62 -7.05 16 12 C -0.06 -1.38 9.47 -39.61 -0.38 -1.75 16 13 C -0.18 -4.39 8.63 -39.27 -0.34 -4.73 16 14 C 0.13 3.29 5.57 -106.81 -0.60 2.70 16 15 C -0.44 -11.12 9.04 -37.75 -0.34 -11.46 16 16 H 0.08 2.01 7.91 -52.48 -0.42 1.60 16 17 C 0.08 1.76 5.13 -17.31 -0.09 1.67 16 18 N -0.77 -18.60 10.97 55.56 0.61 -17.99 16 19 Si 0.91 17.31 29.60 -169.99 -5.03 12.28 16 20 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 21 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 22 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 23 C -0.24 -5.83 9.73 -39.27 -0.38 -6.21 16 24 C -0.02 -0.54 9.52 -39.61 -0.38 -0.92 16 25 H 0.09 0.95 7.84 -52.49 -0.41 0.54 16 26 H 0.10 0.98 8.06 -52.48 -0.42 0.56 16 27 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.07 0.71 7.79 -51.93 -0.40 0.30 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.94 7.84 -51.92 -0.41 0.53 16 33 H 0.06 1.23 5.65 -51.93 -0.29 0.93 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.39 6.02 6.60 -40.82 -0.27 5.76 16 36 H 0.09 1.66 6.37 -52.48 -0.33 1.33 16 37 H 0.12 2.96 6.17 -52.48 -0.32 2.64 16 38 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 39 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 40 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 LS Contribution 330.92 15.07 4.99 4.99 Total: -1.00 -27.32 330.92 -8.61 -35.93 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -5.75 Total: 12.68 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -3.24 Total: -22.78 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: 0.35 Total: -30.25 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.07 Total: -12.85 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.03 Total: 12.28 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.32 -8.61 -35.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281250615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.161 kcal (2) G-P(sol) polarization free energy of solvation -27.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds