Wall clock time and date at job start Mon Mar 30 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50707 * 119.99643 * 2 1 4 4 C 1.53005 * 109.46789 * 125.00253 * 3 2 1 5 5 H 1.08996 * 109.47129 * 55.00073 * 4 3 2 6 6 C 1.52999 * 109.46712 * 175.00247 * 4 3 2 7 7 C 1.52998 * 109.47168 * 184.99737 * 6 4 3 8 8 N 1.46498 * 109.46808 * 294.99905 * 4 3 2 9 9 C 1.34777 * 119.99837 * 155.00632 * 8 4 3 10 10 O 1.21589 * 119.99989 * 359.97438 * 9 8 4 11 11 C 1.47639 * 120.00325 * 180.02562 * 9 8 4 12 12 C 1.40016 * 119.89468 * 359.71834 * 11 9 8 13 13 C 1.36316 * 120.10601 * 179.76262 * 12 11 9 14 14 C 1.40885 * 119.89328 * 0.51264 * 13 12 11 15 15 C 1.41101 * 120.10265 * 179.71715 * 14 13 12 16 16 H 1.08005 * 120.00151 * 155.08731 * 15 14 13 17 17 C 1.40226 * 120.00482 * 335.08670 * 15 14 13 18 18 N 1.30653 * 119.99829 * 342.20387 * 17 15 14 19 19 Si 1.86804 * 120.00530 * 162.20605 * 17 15 14 20 20 H 1.48499 * 109.46913 * 94.65972 * 19 17 15 21 21 H 1.48493 * 109.47018 * 214.66384 * 19 17 15 22 22 H 1.48500 * 109.46511 * 334.66217 * 19 17 15 23 23 C 1.40891 * 119.79067 * 359.74920 * 14 13 12 24 24 C 1.36313 * 119.89414 * 359.97438 * 23 14 13 25 25 H 1.07999 * 120.00766 * 359.97438 * 1 2 3 26 26 H 1.08007 * 119.99450 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00766 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47162 * 5.00659 * 3 2 1 29 29 H 1.09004 * 109.47018 * 244.99901 * 3 2 1 30 30 H 1.08997 * 109.47622 * 64.99835 * 6 4 3 31 31 H 1.09001 * 109.47369 * 304.99461 * 6 4 3 32 32 H 1.09009 * 109.47074 * 59.99733 * 7 6 4 33 33 H 1.09000 * 109.47262 * 299.99983 * 7 6 4 34 34 H 1.08997 * 109.47801 * 179.97438 * 7 6 4 35 35 H 0.96999 * 120.00723 * 334.99801 * 8 4 3 36 36 H 1.08003 * 119.94611 * 0.02562 * 12 11 9 37 37 H 1.08006 * 120.05008 * 180.23206 * 13 12 11 38 38 H 0.97001 * 120.00018 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.05115 * 179.97438 * 23 14 13 40 40 H 1.07995 * 119.94849 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3331 1.1816 5 1 3.6826 0.4574 1.1403 6 6 3.8873 2.6017 1.1110 7 6 4.9418 2.5700 2.2192 8 7 2.2785 1.3223 2.4361 9 6 2.8473 0.8475 3.5620 10 8 3.9881 0.4278 3.5363 11 6 2.0848 0.8360 4.8262 12 6 0.7728 1.3243 4.8543 13 6 0.0632 1.3113 6.0181 14 6 0.6556 0.8154 7.1962 15 6 -0.0728 0.8053 8.4046 16 1 0.1800 0.0992 9.1818 17 6 -1.1251 1.7121 8.5966 18 7 -1.2183 2.7741 7.8413 19 14 -2.3936 1.4018 9.9324 20 1 -2.0019 2.1303 11.1657 21 1 -3.7220 1.8820 9.4745 22 1 -2.4650 -0.0536 10.2186 23 6 1.9780 0.3302 7.1641 24 6 2.6778 0.3420 5.9944 25 1 -0.5401 0.9352 0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8500 -0.9352 -0.0004 28 1 1.3584 2.1317 0.0897 29 1 2.6212 1.4027 -0.9314 30 1 3.2495 3.4759 1.2415 31 1 4.3814 2.6540 0.1409 32 1 5.5798 1.6958 2.0888 33 1 4.4478 2.5178 3.1894 34 1 5.5493 3.4735 2.1687 35 1 1.3682 1.6569 2.4566 36 1 0.3209 1.7080 3.9515 37 1 -0.9501 1.6847 6.0379 38 1 -1.9464 3.4011 7.9738 39 1 2.4364 -0.0506 8.0648 40 1 3.6915 -0.0293 5.9688 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281250615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:36 Heat of formation + Delta-G solvation = -34.347155 kcal Electronic energy + Delta-G solvation = -20560.054634 eV Core-core repulsion = 17531.402939 eV Total energy + Delta-G solvation = -3028.651694 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.98331 -39.12320 -37.53445 -35.65160 -34.62183 -33.46064 -31.70220 -31.28038 -29.62424 -27.60941 -24.80737 -23.83205 -22.81598 -21.76208 -21.25847 -20.53273 -19.35272 -18.29107 -17.50442 -17.05472 -16.29865 -15.94413 -15.73838 -15.36842 -15.10229 -14.62796 -14.54979 -14.28300 -14.16175 -13.82694 -13.66341 -13.35710 -13.17719 -12.99725 -12.83256 -12.64327 -12.35227 -12.34322 -11.97352 -11.77995 -11.70874 -11.64754 -11.35644 -11.10322 -10.58259 -10.20350 -9.83712 -9.55716 -9.37766 -8.78507 -6.47148 0.48542 1.15650 1.38721 1.42677 1.44736 1.54800 2.15384 2.21718 2.50426 2.82447 3.70477 3.75881 4.02726 4.20942 4.29609 4.32461 4.32928 4.43619 4.45889 4.58898 4.67950 4.86419 4.92421 4.98559 5.03121 5.04358 5.06308 5.15277 5.17895 5.29033 5.32746 5.50737 5.59472 5.73834 5.79613 5.85556 5.92591 5.97054 6.00781 6.24218 6.55144 6.78083 6.81238 6.90956 7.57176 8.17106 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022891 B = 0.004289 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.917022 B = 6526.316076 C = 7125.202229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C -0.091 4.091 4 C 0.148 3.852 5 H 0.065 0.935 6 C -0.127 4.127 7 C -0.142 4.142 8 N -0.717 5.717 9 C 0.574 3.426 10 O -0.595 6.595 11 C -0.291 4.291 12 C -0.053 4.053 13 C -0.198 4.198 14 C 0.101 3.899 15 C -0.478 4.478 16 H 0.083 0.917 17 C 0.039 3.961 18 N -0.800 5.800 19 Si 0.986 3.014 20 H -0.261 1.261 21 H -0.261 1.261 22 H -0.258 1.258 23 C -0.254 4.254 24 C -0.034 4.034 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.042 0.958 33 H 0.028 0.972 34 H 0.055 0.945 35 H 0.403 0.597 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.297 0.703 39 H 0.102 0.898 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 1.267 -12.484 12.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.180 4.180 3 C -0.128 4.128 4 C 0.044 3.956 5 H 0.083 0.917 6 C -0.165 4.165 7 C -0.200 4.200 8 N -0.368 5.368 9 C 0.367 3.633 10 O -0.479 6.479 11 C -0.296 4.296 12 C -0.072 4.072 13 C -0.217 4.217 14 C 0.098 3.902 15 C -0.505 4.505 16 H 0.102 0.898 17 C -0.179 4.179 18 N -0.424 5.424 19 Si 0.806 3.194 20 H -0.186 1.186 21 H -0.185 1.185 22 H -0.181 1.181 23 C -0.274 4.274 24 C -0.054 4.054 25 H 0.125 0.875 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.103 0.897 29 H 0.127 0.873 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.239 0.761 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.113 1.212 -12.593 12.651 hybrid contribution -0.683 -0.055 0.969 1.187 sum -0.797 1.157 -11.623 11.708 Atomic orbital electron populations 1.23974 0.95853 1.02498 1.00787 1.22960 0.96362 0.98523 1.00177 1.21043 0.98189 0.95882 0.97724 1.21041 0.93169 0.98494 0.82940 0.91655 1.21950 0.97343 0.97515 0.99725 1.21738 0.98932 1.00557 0.98756 1.45822 1.17908 1.64932 1.08166 1.18220 0.85297 0.75750 0.84040 1.90621 1.19724 1.50791 1.86728 1.19287 0.97337 1.19044 0.93883 1.20711 0.92876 0.96236 0.97416 1.20999 1.00455 1.08081 0.92173 1.18119 0.90693 0.87623 0.93755 1.20093 1.13167 1.15924 1.01308 0.89842 1.26904 0.98997 0.92644 0.99404 1.69766 1.29096 1.07695 1.35828 0.85126 0.76781 0.80094 0.77421 1.18605 1.18494 1.18143 1.20853 0.95574 1.13628 0.97339 1.20503 0.97783 0.94885 0.92193 0.87513 0.88486 0.88296 0.89684 0.87344 0.91169 0.88693 0.93883 0.95315 0.92565 0.76114 0.86108 0.86962 0.89223 0.88028 0.88055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.76 14.32 67.79 0.97 -2.79 16 2 C -0.16 -3.32 9.25 25.66 0.24 -3.08 16 3 C -0.09 -1.63 5.20 29.85 0.16 -1.47 16 4 C 0.15 3.72 2.24 44.99 0.10 3.82 16 5 H 0.07 1.94 7.58 -2.39 -0.02 1.92 16 6 C -0.13 -2.92 5.61 30.59 0.17 -2.75 16 7 C -0.14 -4.28 8.51 71.98 0.61 -3.67 16 8 N -0.72 -22.38 4.69 -445.59 -2.09 -24.47 16 9 C 0.57 23.63 6.33 86.73 0.55 24.18 16 10 O -0.59 -27.25 13.46 -4.00 -0.05 -27.30 16 11 C -0.29 -13.32 5.89 -19.93 -0.12 -13.44 16 12 C -0.05 -2.36 9.47 22.25 0.21 -2.15 16 13 C -0.20 -9.86 8.63 22.47 0.19 -9.66 16 14 C 0.10 5.33 5.57 -21.28 -0.12 5.21 16 15 C -0.48 -24.45 9.04 23.46 0.21 -24.24 16 16 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 17 C 0.04 1.84 5.13 85.35 0.44 2.28 16 18 N -0.80 -38.52 10.97 21.87 0.24 -38.28 16 19 Si 0.99 35.03 29.60 68.60 2.03 37.06 16 20 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 21 H -0.26 -8.70 7.11 99.48 0.71 -7.99 16 22 H -0.26 -9.09 7.11 99.48 0.71 -8.39 16 23 C -0.25 -12.84 9.73 22.47 0.22 -12.63 16 24 C -0.03 -1.68 9.52 22.25 0.21 -1.46 16 25 H 0.11 1.80 7.84 -2.91 -0.02 1.78 16 26 H 0.10 1.82 8.06 -2.91 -0.02 1.79 16 27 H 0.10 2.16 8.06 -2.91 -0.02 2.14 16 28 H 0.08 1.33 7.79 -2.39 -0.02 1.31 16 29 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.04 1.39 7.84 -2.38 -0.02 1.37 16 33 H 0.03 1.06 5.65 -2.39 -0.01 1.04 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.40 11.31 6.60 -92.71 -0.61 10.70 16 36 H 0.12 4.38 6.37 -2.91 -0.02 4.36 16 37 H 0.11 5.67 6.17 -2.91 -0.02 5.65 16 38 H 0.30 12.64 8.29 -92.71 -0.77 11.87 16 39 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 40 H 0.10 4.80 7.63 -2.91 -0.02 4.78 16 Total: -1.00 -60.49 330.92 4.59 -55.90 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: 0.42 Total: 38.93 kcal Atomic # 6 Polarization: -45.89 SS G_CDS: 4.05 Total: -41.84 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -1.85 Total: -62.75 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.05 Total: -27.30 kcal Atomic # 14 Polarization: 35.03 SS G_CDS: 2.03 Total: 37.06 kcal Total: -60.49 4.59 -55.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281250615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.554 kcal (2) G-P(sol) polarization free energy of solvation -60.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds