Wall clock time and date at job start Mon Mar 30 2020 01:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47408 * 55.00074 * 3 2 1 5 5 C 1.36946 * 119.99893 * 269.99674 * 4 3 2 6 6 H 1.07997 * 119.99741 * 325.24237 * 5 4 3 7 7 C 1.38807 * 119.99875 * 145.24524 * 5 4 3 8 8 N 1.31620 * 120.00147 * 156.62393 * 7 5 4 9 9 Si 1.86803 * 119.99994 * 336.61610 * 7 5 4 10 10 H 1.48508 * 109.46692 * 95.13726 * 9 7 5 11 11 H 1.48504 * 109.47089 * 215.13540 * 9 7 5 12 12 H 1.48496 * 109.47448 * 335.13952 * 9 7 5 13 13 C 1.46500 * 120.00361 * 89.99982 * 4 3 2 14 14 C 1.52993 * 109.47651 * 84.34519 * 13 4 3 15 15 O 1.42905 * 109.47096 * 63.63383 * 14 13 4 16 16 C 1.35898 * 117.00437 * 180.02562 * 15 14 13 17 17 C 1.38756 * 120.05080 * 359.72972 * 16 15 14 18 18 C 1.38128 * 119.94006 * 179.70044 * 17 16 15 19 19 C 1.38288 * 120.05646 * 0.59381 * 18 17 16 20 20 C 1.38241 * 120.10992 * 359.68003 * 19 18 17 21 21 C 1.50696 * 119.97268 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47256 * 270.02477 * 21 20 19 23 23 C 1.38168 * 120.05840 * 0.02562 * 20 19 18 24 24 H 4.40632 * 5.51416 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47407 * 294.99274 * 3 2 1 26 26 H 1.09002 * 109.47230 * 174.99749 * 3 2 1 27 27 H 0.97000 * 120.00351 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.46827 * 324.34449 * 13 4 3 29 29 H 1.09001 * 109.46981 * 204.34882 * 13 4 3 30 30 H 1.08995 * 109.47811 * 183.63413 * 14 13 4 31 31 H 1.09003 * 109.47234 * 303.63707 * 14 13 4 32 32 H 1.07999 * 120.03150 * 359.97438 * 17 16 15 33 33 H 1.08005 * 119.96681 * 180.29746 * 18 17 16 34 34 H 1.07997 * 119.94596 * 179.70462 * 19 18 17 35 35 H 1.09009 * 109.46818 * 30.02474 * 21 20 19 36 36 H 1.09007 * 109.47568 * 150.01956 * 21 20 19 37 37 H 1.08995 * 109.46829 * 299.99366 * 22 21 20 38 38 H 1.08999 * 109.47202 * 59.99957 * 22 21 20 39 39 H 1.09006 * 109.46863 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.02910 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7913 -1.1314 5 6 3.3636 -2.1330 -0.9799 6 1 3.7347 -2.5147 -0.0403 7 6 3.1188 -3.0021 -2.0341 8 7 3.7359 -4.1635 -2.0865 9 14 1.9132 -2.5237 -3.3784 10 1 2.6539 -1.9213 -4.5160 11 1 1.1869 -3.7320 -3.8450 12 1 0.9407 -1.5374 -2.8431 13 6 3.3786 -0.1481 -2.4248 14 6 4.7756 0.4757 -2.4289 15 8 5.7575 -0.5541 -2.2968 16 6 7.0600 -0.1666 -2.2823 17 6 7.3866 1.1769 -2.3985 18 6 8.7109 1.5688 -2.3772 19 6 9.7114 0.6223 -2.2525 20 6 9.3888 -0.7174 -2.1422 21 6 10.4816 -1.7462 -2.0071 22 6 10.9059 -2.2251 -3.3969 23 6 8.0654 -1.1140 -2.1569 24 1 -1.0498 0.0000 -0.0003 25 1 3.0095 -0.4334 0.9314 26 1 3.0089 1.0246 -0.0896 27 1 3.5646 -4.7711 -2.8229 28 1 2.6330 0.6296 -2.5902 29 1 3.3104 -0.8916 -3.2190 30 1 4.9327 1.0093 -3.3663 31 1 4.8651 1.1721 -1.5951 32 1 6.6058 1.9160 -2.5011 33 1 8.9654 2.6150 -2.4628 34 1 10.7465 0.9303 -2.2409 35 1 11.3376 -1.3024 -1.4986 36 1 10.1138 -2.5930 -1.4275 37 1 10.0500 -2.6690 -3.9052 38 1 11.2738 -1.3784 -3.9763 39 1 11.6967 -2.9690 -3.2990 40 1 7.8139 -2.1607 -2.0703 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281362910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:50 Heat of formation + Delta-G solvation = 63.568747 kcal Electronic energy + Delta-G solvation = -20638.591991 eV Core-core repulsion = 17614.186249 eV Total energy + Delta-G solvation = -3024.405742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.72084 -37.60136 -36.07525 -33.62109 -32.53715 -31.52878 -30.25457 -29.00595 -28.51410 -26.43308 -24.19390 -23.06846 -22.14136 -21.38690 -20.17177 -17.53318 -17.32864 -16.89096 -15.89078 -15.64653 -15.35349 -14.86361 -14.51788 -14.03842 -13.92480 -13.58892 -13.33407 -13.13608 -12.84830 -12.66609 -12.30167 -12.18374 -11.85545 -11.61176 -11.53217 -11.19524 -11.10626 -10.86520 -10.61170 -10.46234 -10.34572 -9.83882 -9.73931 -9.51464 -9.38030 -8.52805 -8.51591 -7.71812 -7.06062 -5.96147 -3.36567 1.60553 1.81380 3.29184 3.46850 3.48593 3.53473 3.57381 3.82869 4.06702 4.53748 4.90186 4.97056 5.03247 5.13594 5.20403 5.35187 5.41517 5.43623 5.51650 5.59310 5.68223 5.73668 5.80290 5.86008 5.86514 5.97471 6.06029 6.13808 6.15836 6.26937 6.39449 6.41783 6.54366 6.66432 6.70407 6.77156 6.88259 7.14147 7.95763 8.09862 8.33851 8.39626 8.91695 9.70547 10.02392 11.19222 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019888 B = 0.005191 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.530028 B = 5392.152405 C = 6155.587189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.168 4.168 3 C 0.238 3.762 4 N -0.588 5.588 5 C -0.259 4.259 6 H 0.083 0.917 7 C 0.044 3.956 8 N -0.892 5.892 9 Si 0.865 3.135 10 H -0.286 1.286 11 H -0.300 1.300 12 H -0.267 1.267 13 C 0.132 3.868 14 C 0.045 3.955 15 O -0.269 6.269 16 C 0.147 3.853 17 C -0.225 4.225 18 C -0.082 4.082 19 C -0.173 4.173 20 C -0.046 4.046 21 C -0.084 4.084 22 C -0.146 4.146 23 C -0.150 4.150 24 H 0.203 0.797 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.262 0.738 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.277 10.535 -1.097 14.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.171 4.171 3 C 0.113 3.887 4 N -0.308 5.308 5 C -0.387 4.387 6 H 0.100 0.900 7 C -0.157 4.157 8 N -0.533 5.533 9 Si 0.695 3.305 10 H -0.214 1.214 11 H -0.228 1.228 12 H -0.191 1.191 13 C 0.005 3.995 14 C -0.033 4.033 15 O -0.180 6.180 16 C 0.100 3.900 17 C -0.244 4.244 18 C -0.100 4.100 19 C -0.191 4.191 20 C -0.046 4.046 21 C -0.122 4.122 22 C -0.203 4.203 23 C -0.169 4.169 24 H 0.220 0.780 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.235 10.139 -1.157 13.763 hybrid contribution -1.122 0.439 -0.958 1.539 sum 8.113 10.578 -2.115 13.498 Atomic orbital electron populations 1.24699 0.95806 1.03931 1.03357 1.25219 0.96258 0.97546 0.98046 1.18225 0.81713 0.95497 0.93275 1.44158 1.73240 1.06648 1.06790 1.18690 1.38209 0.80130 1.01669 0.89962 1.25316 0.97536 0.95069 0.97787 1.69862 1.40725 1.10456 1.32217 0.87143 0.83514 0.77441 0.82370 1.21431 1.22824 1.19142 1.21386 0.90829 0.96912 0.90332 1.23641 0.90346 0.90301 0.99021 1.86505 1.11001 1.34565 1.85933 1.19283 0.85488 0.92310 0.92913 1.21237 0.97516 0.95101 1.10561 1.20802 0.92266 0.98874 0.98026 1.20754 0.98745 0.92541 1.07063 1.19624 0.93467 0.94220 0.97338 1.20537 0.96231 0.97359 0.98025 1.21738 1.01355 1.00863 0.96373 1.20404 0.90313 0.99820 1.06376 0.78012 0.90179 0.91745 0.92792 0.92036 0.91058 0.93458 0.92787 0.85984 0.86565 0.86735 0.91225 0.90709 0.92226 0.92783 0.92574 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.82 19.25 29.55 0.57 -4.25 16 2 C -0.17 -3.39 13.68 -37.12 -0.51 -3.90 16 3 C 0.24 4.68 6.16 -6.83 -0.04 4.64 16 4 N -0.59 -13.68 2.03 -176.58 -0.36 -14.04 16 5 C -0.26 -7.16 9.68 -15.06 -0.15 -7.30 16 6 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 7 C 0.04 1.26 5.27 -17.43 -0.09 1.17 16 8 N -0.89 -27.22 13.97 55.49 0.78 -26.44 16 9 Si 0.87 22.30 25.00 -169.99 -4.25 18.05 16 10 H -0.29 -7.13 6.64 56.52 0.38 -6.76 16 11 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 12 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 13 C 0.13 2.77 4.72 -4.05 -0.02 2.75 16 14 C 0.04 0.82 5.09 37.15 0.19 1.01 16 15 O -0.27 -5.80 9.82 -19.42 -0.19 -5.99 16 16 C 0.15 2.75 6.69 -39.22 -0.26 2.49 16 17 C -0.23 -3.51 9.04 -39.43 -0.36 -3.87 16 18 C -0.08 -1.10 10.04 -39.60 -0.40 -1.50 16 19 C -0.17 -2.31 9.70 -39.56 -0.38 -2.69 16 20 C -0.05 -0.68 5.13 -104.65 -0.54 -1.21 16 21 C -0.08 -1.00 6.06 -27.89 -0.17 -1.17 16 22 C -0.15 -1.58 9.89 37.16 0.37 -1.21 16 23 C -0.15 -2.67 9.64 -39.43 -0.38 -3.05 16 24 H 0.20 2.97 7.80 -54.10 -0.42 2.54 16 25 H 0.08 1.54 8.04 -51.93 -0.42 1.13 16 26 H 0.06 1.06 8.05 -51.93 -0.42 0.64 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.06 1.14 8.11 -51.93 -0.42 0.72 16 29 H 0.07 1.70 3.25 -51.93 -0.17 1.53 16 30 H 0.05 0.75 7.65 -51.93 -0.40 0.35 16 31 H 0.05 0.89 7.65 -51.93 -0.40 0.49 16 32 H 0.12 1.70 6.30 -52.49 -0.33 1.37 16 33 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.07 0.70 8.09 -51.92 -0.42 0.28 16 36 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.13 2.51 8.06 -52.49 -0.42 2.08 16 LS Contribution 339.72 15.07 5.12 5.12 Total: -1.00 -31.97 339.72 -7.01 -38.98 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.93 Total: 2.42 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -2.17 Total: -18.09 kcal Atomic # 7 Polarization: -40.90 SS G_CDS: 0.42 Total: -40.48 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.19 Total: -5.99 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.25 Total: 18.05 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.97 -7.01 -38.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281362910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.546 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds