Wall clock time and date at job start Mon Mar 30 2020 01:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47408 * 55.00074 * 3 2 1 5 5 C 1.36946 * 119.99893 * 269.99674 * 4 3 2 6 6 H 1.07997 * 119.99741 * 325.24237 * 5 4 3 7 7 C 1.38807 * 119.99875 * 145.24524 * 5 4 3 8 8 N 1.31620 * 120.00147 * 156.62393 * 7 5 4 9 9 Si 1.86803 * 119.99994 * 336.61610 * 7 5 4 10 10 H 1.48508 * 109.46692 * 95.13726 * 9 7 5 11 11 H 1.48504 * 109.47089 * 215.13540 * 9 7 5 12 12 H 1.48496 * 109.47448 * 335.13952 * 9 7 5 13 13 C 1.46500 * 120.00361 * 89.99982 * 4 3 2 14 14 C 1.52993 * 109.47651 * 84.34519 * 13 4 3 15 15 O 1.42905 * 109.47096 * 63.63383 * 14 13 4 16 16 C 1.35898 * 117.00437 * 180.02562 * 15 14 13 17 17 C 1.38756 * 120.05080 * 359.72972 * 16 15 14 18 18 C 1.38128 * 119.94006 * 179.70044 * 17 16 15 19 19 C 1.38288 * 120.05646 * 0.59381 * 18 17 16 20 20 C 1.38241 * 120.10992 * 359.68003 * 19 18 17 21 21 C 1.50696 * 119.97268 * 179.97438 * 20 19 18 22 22 C 1.52998 * 109.47256 * 270.02477 * 21 20 19 23 23 C 1.38168 * 120.05840 * 0.02562 * 20 19 18 24 24 H 4.40632 * 5.51416 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47407 * 294.99274 * 3 2 1 26 26 H 1.09002 * 109.47230 * 174.99749 * 3 2 1 27 27 H 0.97000 * 120.00351 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.46827 * 324.34449 * 13 4 3 29 29 H 1.09001 * 109.46981 * 204.34882 * 13 4 3 30 30 H 1.08995 * 109.47811 * 183.63413 * 14 13 4 31 31 H 1.09003 * 109.47234 * 303.63707 * 14 13 4 32 32 H 1.07999 * 120.03150 * 359.97438 * 17 16 15 33 33 H 1.08005 * 119.96681 * 180.29746 * 18 17 16 34 34 H 1.07997 * 119.94596 * 179.70462 * 19 18 17 35 35 H 1.09009 * 109.46818 * 30.02474 * 21 20 19 36 36 H 1.09007 * 109.47568 * 150.01956 * 21 20 19 37 37 H 1.08995 * 109.46829 * 299.99366 * 22 21 20 38 38 H 1.08999 * 109.47202 * 59.99957 * 22 21 20 39 39 H 1.09006 * 109.46863 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.02910 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.7913 -1.1314 5 6 3.3636 -2.1330 -0.9799 6 1 3.7347 -2.5147 -0.0403 7 6 3.1188 -3.0021 -2.0341 8 7 3.7359 -4.1635 -2.0865 9 14 1.9132 -2.5237 -3.3784 10 1 2.6539 -1.9213 -4.5160 11 1 1.1869 -3.7320 -3.8450 12 1 0.9407 -1.5374 -2.8431 13 6 3.3786 -0.1481 -2.4248 14 6 4.7756 0.4757 -2.4289 15 8 5.7575 -0.5541 -2.2968 16 6 7.0600 -0.1666 -2.2823 17 6 7.3866 1.1769 -2.3985 18 6 8.7109 1.5688 -2.3772 19 6 9.7114 0.6223 -2.2525 20 6 9.3888 -0.7174 -2.1422 21 6 10.4816 -1.7462 -2.0071 22 6 10.9059 -2.2251 -3.3969 23 6 8.0654 -1.1140 -2.1569 24 1 -1.0498 0.0000 -0.0003 25 1 3.0095 -0.4334 0.9314 26 1 3.0089 1.0246 -0.0896 27 1 3.5646 -4.7711 -2.8229 28 1 2.6330 0.6296 -2.5902 29 1 3.3104 -0.8916 -3.2190 30 1 4.9327 1.0093 -3.3663 31 1 4.8651 1.1721 -1.5951 32 1 6.6058 1.9160 -2.5011 33 1 8.9654 2.6150 -2.4628 34 1 10.7465 0.9303 -2.2409 35 1 11.3376 -1.3024 -1.4986 36 1 10.1138 -2.5930 -1.4275 37 1 10.0500 -2.6690 -3.9052 38 1 11.2738 -1.3784 -3.9763 39 1 11.6967 -2.9690 -3.2990 40 1 7.8139 -2.1607 -2.0703 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281362910.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:50 Heat of formation + Delta-G solvation = 45.414148 kcal Electronic energy + Delta-G solvation = -20639.379233 eV Core-core repulsion = 17614.186249 eV Total energy + Delta-G solvation = -3025.192985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00680 -38.98708 -37.72445 -34.66740 -34.30304 -33.37262 -31.62876 -30.27410 -29.80994 -28.23588 -25.56419 -24.45895 -23.33556 -23.08380 -21.42235 -19.10244 -18.75632 -18.63987 -17.51422 -16.87872 -16.75439 -16.53641 -15.87975 -15.48018 -15.31799 -15.01194 -14.83454 -14.37168 -14.28687 -14.05660 -13.91471 -13.66365 -13.26408 -13.02220 -12.92143 -12.70625 -12.49897 -12.24458 -11.94250 -11.84643 -11.79023 -11.55188 -11.39464 -11.24145 -10.88285 -10.60703 -9.69343 -8.99579 -8.98731 -8.17276 -5.53516 0.43724 0.61054 1.23846 1.36267 1.46617 1.95576 2.07540 2.40665 2.49211 2.88566 3.05180 3.48219 3.77375 3.86841 3.95863 4.15437 4.17553 4.23577 4.33712 4.40421 4.46119 4.49468 4.53726 4.65009 4.67530 4.70404 4.81175 4.84613 4.96348 5.08139 5.13294 5.20484 5.26394 5.37831 5.50656 5.56626 5.73806 5.90709 6.02162 6.15548 6.74130 6.86375 6.95852 7.59867 7.96616 9.02677 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.019888 B = 0.005191 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.530028 B = 5392.152405 C = 6155.587189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.213 4.213 3 C 0.239 3.761 4 N -0.600 5.600 5 C -0.238 4.238 6 H 0.041 0.959 7 C -0.015 4.015 8 N -0.944 5.944 9 Si 0.932 3.068 10 H -0.276 1.276 11 H -0.311 1.311 12 H -0.257 1.257 13 C 0.125 3.875 14 C 0.048 3.952 15 O -0.317 6.317 16 C 0.115 3.885 17 C -0.226 4.226 18 C -0.074 4.074 19 C -0.166 4.166 20 C -0.046 4.046 21 C -0.085 4.085 22 C -0.143 4.143 23 C -0.184 4.184 24 H 0.239 0.761 25 H 0.072 0.928 26 H 0.102 0.898 27 H 0.259 0.741 28 H 0.094 0.906 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.141 0.859 33 H 0.156 0.844 34 H 0.151 0.849 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.891 14.233 -1.659 17.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.216 4.216 3 C 0.114 3.886 4 N -0.322 5.322 5 C -0.368 4.368 6 H 0.059 0.941 7 C -0.211 4.211 8 N -0.589 5.589 9 Si 0.762 3.238 10 H -0.204 1.204 11 H -0.240 1.240 12 H -0.181 1.181 13 C 0.000 4.000 14 C -0.030 4.030 15 O -0.230 6.230 16 C 0.069 3.931 17 C -0.245 4.245 18 C -0.092 4.092 19 C -0.184 4.184 20 C -0.046 4.046 21 C -0.122 4.122 22 C -0.200 4.200 23 C -0.203 4.203 24 H 0.255 0.745 25 H 0.090 0.910 26 H 0.119 0.881 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.158 0.842 33 H 0.174 0.826 34 H 0.169 0.831 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.844 13.895 -1.715 17.115 hybrid contribution -1.220 -0.623 -0.661 1.521 sum 8.624 13.272 -2.376 16.005 Atomic orbital electron populations 1.25587 0.96803 1.01994 1.01113 1.25330 0.96893 0.99385 0.99995 1.18267 0.82109 0.96685 0.91509 1.44171 1.74181 1.05254 1.08544 1.18490 1.36058 0.82535 0.99741 0.94136 1.25879 0.99384 0.95244 1.00572 1.70005 1.43023 1.12216 1.33624 0.86057 0.81103 0.76597 0.80083 1.20387 1.23999 1.18149 1.21509 0.93529 0.96866 0.88128 1.23592 0.88272 0.89799 1.01290 1.86419 1.12785 1.36724 1.87066 1.19551 0.84343 0.94041 0.95184 1.21457 0.99255 0.93713 1.10068 1.21290 0.91179 1.00901 0.95843 1.21206 1.00679 0.91527 1.04996 1.19936 0.92535 0.95944 0.96212 1.20621 0.96230 0.96574 0.98802 1.21716 1.01022 1.01695 0.95559 1.20430 0.92291 0.98394 1.09213 0.74497 0.90975 0.88055 0.93205 0.88855 0.94006 0.90654 0.90761 0.84172 0.82636 0.83134 0.88438 0.91937 0.94488 0.91646 0.90634 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.09 19.25 74.32 1.43 -6.66 16 2 C -0.21 -8.23 13.68 31.12 0.43 -7.80 16 3 C 0.24 9.17 6.16 84.57 0.52 9.69 16 4 N -0.60 -27.98 2.03 -712.57 -1.45 -29.42 16 5 C -0.24 -13.77 9.68 84.03 0.81 -12.95 16 6 H 0.04 2.62 8.06 -2.91 -0.02 2.60 16 7 C -0.01 -0.88 5.27 84.86 0.45 -0.43 16 8 N -0.94 -61.07 13.97 21.65 0.30 -60.77 16 9 Si 0.93 47.62 25.00 68.60 1.71 49.34 16 10 H -0.28 -13.48 6.64 99.48 0.66 -12.82 16 11 H -0.31 -16.21 7.11 99.48 0.71 -15.51 16 12 H -0.26 -12.56 7.11 99.48 0.71 -11.86 16 13 C 0.12 5.11 4.72 86.38 0.41 5.52 16 14 C 0.05 1.69 5.09 71.98 0.37 2.05 16 15 O -0.32 -14.14 9.82 -92.40 -0.91 -15.05 16 16 C 0.11 4.38 6.69 22.51 0.15 4.53 16 17 C -0.23 -6.59 9.04 22.37 0.20 -6.39 16 18 C -0.07 -1.73 10.04 22.26 0.22 -1.51 16 19 C -0.17 -3.89 9.70 22.28 0.22 -3.67 16 20 C -0.05 -1.32 5.13 -19.88 -0.10 -1.42 16 21 C -0.09 -1.94 6.06 29.85 0.18 -1.76 16 22 C -0.14 -2.95 9.89 71.98 0.71 -2.24 16 23 C -0.18 -6.94 9.64 22.37 0.22 -6.72 16 24 H 0.24 5.97 7.80 -4.43 -0.03 5.93 16 25 H 0.07 2.83 8.04 -2.39 -0.02 2.81 16 26 H 0.10 3.08 8.05 -2.39 -0.02 3.06 16 27 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 28 H 0.09 3.18 8.11 -2.39 -0.02 3.16 16 29 H 0.04 1.97 3.25 -2.39 -0.01 1.96 16 30 H 0.08 2.21 7.65 -2.39 -0.02 2.19 16 31 H 0.07 2.28 7.65 -2.39 -0.02 2.26 16 32 H 0.14 3.46 6.30 -2.91 -0.02 3.44 16 33 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 34 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 35 H 0.10 1.69 8.09 -2.38 -0.02 1.67 16 36 H 0.06 1.56 8.09 -2.38 -0.02 1.54 16 37 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.10 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -74.53 339.72 6.83 -67.69 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.96 Total: 17.98 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: 6.21 Total: -29.77 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -1.14 Total: -90.19 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.91 Total: -15.05 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.71 Total: 49.34 kcal Total: -74.53 6.83 -67.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281362910.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.109 kcal (2) G-P(sol) polarization free energy of solvation -74.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds