Wall clock time and date at job start Mon Mar 30 2020 02:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46767 * 212.48302 * 3 2 1 5 5 C 1.36934 * 119.99962 * 268.64512 * 4 3 2 6 6 H 1.08000 * 120.00217 * 321.95510 * 5 4 3 7 7 C 1.38817 * 119.99566 * 141.95739 * 5 4 3 8 8 N 1.31619 * 119.99607 * 157.13957 * 7 5 4 9 9 Si 1.86797 * 120.00314 * 337.13548 * 7 5 4 10 10 H 1.48503 * 109.46925 * 95.69260 * 9 7 5 11 11 H 1.48497 * 109.47415 * 215.69984 * 9 7 5 12 12 H 1.48502 * 109.47124 * 335.69742 * 9 7 5 13 13 C 1.46503 * 119.99869 * 88.64839 * 4 3 2 14 14 C 1.52996 * 109.47059 * 89.99613 * 13 4 3 15 15 H 1.08995 * 109.47489 * 304.99923 * 14 13 4 16 16 O 1.42901 * 109.47282 * 65.00131 * 14 13 4 17 17 C 1.53006 * 109.47044 * 185.00043 * 14 13 4 18 18 C 1.52994 * 109.47004 * 175.00421 * 17 14 13 19 19 C 1.50696 * 109.47186 * 180.02562 * 18 17 14 20 20 C 1.38238 * 119.99829 * 269.72540 * 19 18 17 21 21 C 1.38236 * 119.99952 * 179.76331 * 20 19 18 22 22 C 1.38239 * 119.99954 * 0.50753 * 21 20 19 23 23 C 1.38234 * 119.99880 * 359.74367 * 22 21 20 24 24 C 1.38235 * 120.00249 * 0.02562 * 23 22 21 25 25 H 4.40648 * 5.51413 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47225 * 92.48552 * 3 2 1 27 27 H 1.08997 * 109.47224 * 332.48303 * 3 2 1 28 28 H 0.97003 * 119.99642 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47097 * 329.99778 * 13 4 3 30 30 H 1.08993 * 109.47211 * 209.99761 * 13 4 3 31 31 H 0.96702 * 113.99361 * 59.99658 * 16 14 13 32 32 H 1.08991 * 109.46916 * 55.00069 * 17 14 13 33 33 H 1.08995 * 109.46829 * 295.00213 * 17 14 13 34 34 H 1.09001 * 109.47977 * 59.99652 * 18 17 14 35 35 H 1.09004 * 109.47249 * 299.99746 * 18 17 14 36 36 H 1.08000 * 119.99831 * 359.97438 * 20 19 18 37 37 H 1.08002 * 120.00072 * 180.22830 * 21 20 19 38 38 H 1.08005 * 119.99821 * 179.72314 * 22 21 20 39 39 H 1.07999 * 119.99609 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00290 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.1661 0.7418 5 6 3.3879 2.3395 0.0834 6 1 3.8272 2.3211 -0.9030 7 6 3.0808 3.5528 0.6839 8 7 3.6989 4.6507 0.3030 9 14 1.7904 3.6274 2.0325 10 1 2.4557 3.5603 3.3584 11 1 1.0325 4.8997 1.9226 12 1 0.8571 2.4814 1.8885 13 6 3.3498 1.0759 2.1880 14 6 4.7847 0.6214 2.4621 15 1 4.9768 -0.3131 1.9349 16 8 5.6968 1.6221 2.0053 17 6 4.9735 0.4071 3.9652 18 6 6.3677 -0.1658 4.2275 19 6 6.5535 -0.3775 5.7079 20 6 7.0806 0.6333 6.4898 21 6 7.2465 0.4409 7.8486 22 6 6.8951 -0.7660 8.4238 23 6 6.3729 -1.7786 7.6410 24 6 6.2026 -1.5846 6.2830 25 1 -1.0502 -0.0004 0.0000 26 1 3.0094 0.0454 -1.0267 27 1 3.0098 -0.9106 0.4748 28 1 3.4840 5.4985 0.7224 29 1 2.6525 0.3552 2.6153 30 1 3.1854 2.0533 2.6415 31 1 5.5833 2.4821 2.4326 32 1 4.2196 -0.2902 4.3303 33 1 4.8688 1.3599 4.4840 34 1 7.1218 0.5314 3.8623 35 1 6.4725 -1.1187 3.7086 36 1 7.3596 1.5746 6.0396 37 1 7.6548 1.2320 8.4601 38 1 7.0289 -0.9179 9.4847 39 1 6.0988 -2.7217 8.0903 40 1 5.7950 -2.3759 5.6713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281389345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:56 Heat of formation + Delta-G solvation = 44.420180 kcal Electronic energy + Delta-G solvation = -20455.857375 eV Core-core repulsion = 17430.621288 eV Total energy + Delta-G solvation = -3025.236087 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.37525 -37.68839 -35.41233 -33.55421 -32.44730 -31.33460 -30.93893 -30.11893 -27.67361 -26.29895 -24.07329 -22.61646 -21.77055 -20.96856 -20.67313 -17.45620 -17.06118 -16.73697 -15.87917 -15.41368 -15.27209 -15.03595 -14.52502 -14.29152 -13.89567 -13.49594 -13.38064 -13.09802 -13.05845 -12.64825 -12.47605 -12.20719 -11.84795 -11.63217 -11.24533 -11.18199 -11.01514 -10.65101 -10.58865 -10.33881 -9.97422 -9.71588 -9.62979 -9.36295 -9.28273 -8.98198 -8.67239 -8.50998 -6.93256 -5.99894 -3.41120 1.31533 1.34050 3.24068 3.44567 3.50463 3.54417 3.59573 3.73430 4.49845 4.70453 4.80417 4.90436 5.00491 5.08625 5.13275 5.18177 5.30711 5.38805 5.45014 5.48678 5.57996 5.64406 5.81726 5.95740 5.96358 6.02779 6.10459 6.18877 6.21224 6.37486 6.40147 6.42144 6.44318 6.50244 6.65241 6.71350 6.82410 6.96698 8.00695 8.33820 8.41385 8.52360 8.93310 9.67609 10.04657 11.15230 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020180 B = 0.004522 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.159973 B = 6189.826635 C = 6707.916017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.167 4.167 3 C 0.238 3.762 4 N -0.588 5.588 5 C -0.252 4.252 6 H 0.081 0.919 7 C 0.040 3.960 8 N -0.895 5.895 9 Si 0.865 3.135 10 H -0.288 1.288 11 H -0.301 1.301 12 H -0.266 1.266 13 C 0.106 3.894 14 C 0.094 3.906 15 H 0.088 0.912 16 O -0.539 6.539 17 C -0.147 4.147 18 C -0.077 4.077 19 C -0.073 4.073 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.133 4.133 23 C -0.121 4.121 24 C -0.121 4.121 25 H 0.202 0.798 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.262 0.738 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.369 0.631 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.480 -11.438 12.912 17.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.170 4.170 3 C 0.113 3.887 4 N -0.308 5.308 5 C -0.380 4.380 6 H 0.099 0.901 7 C -0.160 4.160 8 N -0.536 5.536 9 Si 0.695 3.305 10 H -0.217 1.217 11 H -0.229 1.229 12 H -0.191 1.191 13 C -0.020 4.020 14 C 0.032 3.968 15 H 0.106 0.894 16 O -0.343 6.343 17 C -0.186 4.186 18 C -0.114 4.114 19 C -0.073 4.073 20 C -0.136 4.136 21 C -0.138 4.138 22 C -0.151 4.151 23 C -0.139 4.139 24 C -0.139 4.139 25 H 0.219 0.781 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.216 0.784 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.745 -11.726 12.517 17.796 hybrid contribution -1.464 0.736 1.359 2.129 sum 3.282 -10.990 13.876 18.003 Atomic orbital electron populations 1.24704 0.95816 1.03788 1.03781 1.25282 0.96323 0.97545 0.97809 1.18251 0.81585 0.90906 0.97998 1.44066 1.73433 1.10297 1.03012 1.18732 1.34576 0.81454 1.03288 0.90133 1.25408 0.97445 0.95315 0.97873 1.69881 1.40527 0.99222 1.43950 0.87144 0.84617 0.77052 0.81688 1.21664 1.22923 1.19102 1.21910 0.94306 0.99807 0.85931 1.22498 0.91322 0.92350 0.90621 0.89399 1.86540 1.57305 1.22362 1.68130 1.22353 0.96137 1.01388 0.98728 1.20586 0.98403 1.02049 0.90395 1.20107 0.97033 0.93633 0.96522 1.21140 0.99681 0.99023 0.93792 1.21149 1.00160 0.97356 0.95098 1.21099 1.00410 0.93939 0.99619 1.21121 0.99720 0.98982 0.94052 1.21089 1.00540 0.97237 0.95000 0.78065 0.90178 0.91762 0.92812 0.93689 0.92477 0.78417 0.91602 0.91865 0.90114 0.91152 0.85959 0.86294 0.86474 0.86368 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.97 19.25 29.55 0.57 -4.40 16 2 C -0.17 -3.42 13.68 -37.12 -0.51 -3.93 16 3 C 0.24 4.72 6.14 -6.82 -0.04 4.68 16 4 N -0.59 -13.52 2.00 -176.57 -0.35 -13.87 16 5 C -0.25 -6.85 9.40 -15.06 -0.14 -6.99 16 6 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 7 C 0.04 1.12 5.29 -17.43 -0.09 1.03 16 8 N -0.89 -26.57 13.97 55.49 0.78 -25.80 16 9 Si 0.86 21.94 25.10 -169.99 -4.27 17.67 16 10 H -0.29 -6.97 6.68 56.52 0.38 -6.59 16 11 H -0.30 -7.87 7.11 56.52 0.40 -7.46 16 12 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.11 2.18 4.20 -4.04 -0.02 2.16 16 14 C 0.09 1.64 3.21 -26.73 -0.09 1.56 16 15 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 16 O -0.54 -10.79 12.35 -35.23 -0.44 -11.23 16 17 C -0.15 -2.12 4.88 -26.73 -0.13 -2.25 16 18 C -0.08 -0.99 5.24 -27.89 -0.15 -1.13 16 19 C -0.07 -0.90 5.13 -104.62 -0.54 -1.44 16 20 C -0.12 -1.41 9.70 -39.58 -0.38 -1.80 16 21 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 22 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 23 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 24 C -0.12 -1.37 9.70 -39.58 -0.38 -1.75 16 25 H 0.20 3.03 7.80 -54.08 -0.42 2.61 16 26 H 0.08 1.55 8.03 -51.93 -0.42 1.14 16 27 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.06 1.29 3.38 -51.93 -0.18 1.12 16 31 H 0.37 7.15 9.05 45.56 0.41 7.56 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.09 7.77 -51.93 -0.40 0.68 16 35 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 341.63 15.07 5.15 5.15 Total: -1.00 -31.41 341.63 -7.45 -38.86 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -5.23 Total: 8.53 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: -3.09 Total: -19.32 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.42 Total: -39.67 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.44 Total: -11.23 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.27 Total: 17.67 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.41 -7.45 -38.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281389345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.284 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds