Wall clock time and date at job start Mon Mar 30 2020 02:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46767 * 212.48302 * 3 2 1 5 5 C 1.36934 * 119.99962 * 268.64512 * 4 3 2 6 6 H 1.08000 * 120.00217 * 321.95510 * 5 4 3 7 7 C 1.38817 * 119.99566 * 141.95739 * 5 4 3 8 8 N 1.31619 * 119.99607 * 157.13957 * 7 5 4 9 9 Si 1.86797 * 120.00314 * 337.13548 * 7 5 4 10 10 H 1.48503 * 109.46925 * 95.69260 * 9 7 5 11 11 H 1.48497 * 109.47415 * 215.69984 * 9 7 5 12 12 H 1.48502 * 109.47124 * 335.69742 * 9 7 5 13 13 C 1.46503 * 119.99869 * 88.64839 * 4 3 2 14 14 C 1.52996 * 109.47059 * 89.99613 * 13 4 3 15 15 H 1.08995 * 109.47489 * 304.99923 * 14 13 4 16 16 O 1.42901 * 109.47282 * 65.00131 * 14 13 4 17 17 C 1.53006 * 109.47044 * 185.00043 * 14 13 4 18 18 C 1.52994 * 109.47004 * 175.00421 * 17 14 13 19 19 C 1.50696 * 109.47186 * 180.02562 * 18 17 14 20 20 C 1.38238 * 119.99829 * 269.72540 * 19 18 17 21 21 C 1.38236 * 119.99952 * 179.76331 * 20 19 18 22 22 C 1.38239 * 119.99954 * 0.50753 * 21 20 19 23 23 C 1.38234 * 119.99880 * 359.74367 * 22 21 20 24 24 C 1.38235 * 120.00249 * 0.02562 * 23 22 21 25 25 H 4.40648 * 5.51413 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47225 * 92.48552 * 3 2 1 27 27 H 1.08997 * 109.47224 * 332.48303 * 3 2 1 28 28 H 0.97003 * 119.99642 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47097 * 329.99778 * 13 4 3 30 30 H 1.08993 * 109.47211 * 209.99761 * 13 4 3 31 31 H 0.96702 * 113.99361 * 59.99658 * 16 14 13 32 32 H 1.08991 * 109.46916 * 55.00069 * 17 14 13 33 33 H 1.08995 * 109.46829 * 295.00213 * 17 14 13 34 34 H 1.09001 * 109.47977 * 59.99652 * 18 17 14 35 35 H 1.09004 * 109.47249 * 299.99746 * 18 17 14 36 36 H 1.08000 * 119.99831 * 359.97438 * 20 19 18 37 37 H 1.08002 * 120.00072 * 180.22830 * 21 20 19 38 38 H 1.08005 * 119.99821 * 179.72314 * 22 21 20 39 39 H 1.07999 * 119.99609 * 179.97438 * 23 22 21 40 40 H 1.08000 * 120.00290 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.1661 0.7418 5 6 3.3879 2.3395 0.0834 6 1 3.8272 2.3211 -0.9030 7 6 3.0808 3.5528 0.6839 8 7 3.6989 4.6507 0.3030 9 14 1.7904 3.6274 2.0325 10 1 2.4557 3.5603 3.3584 11 1 1.0325 4.8997 1.9226 12 1 0.8571 2.4814 1.8885 13 6 3.3498 1.0759 2.1880 14 6 4.7847 0.6214 2.4621 15 1 4.9768 -0.3131 1.9349 16 8 5.6968 1.6221 2.0053 17 6 4.9735 0.4071 3.9652 18 6 6.3677 -0.1658 4.2275 19 6 6.5535 -0.3775 5.7079 20 6 7.0806 0.6333 6.4898 21 6 7.2465 0.4409 7.8486 22 6 6.8951 -0.7660 8.4238 23 6 6.3729 -1.7786 7.6410 24 6 6.2026 -1.5846 6.2830 25 1 -1.0502 -0.0004 0.0000 26 1 3.0094 0.0454 -1.0267 27 1 3.0098 -0.9106 0.4748 28 1 3.4840 5.4985 0.7224 29 1 2.6525 0.3552 2.6153 30 1 3.1854 2.0533 2.6415 31 1 5.5833 2.4821 2.4326 32 1 4.2196 -0.2902 4.3303 33 1 4.8688 1.3599 4.4840 34 1 7.1218 0.5314 3.8623 35 1 6.4725 -1.1187 3.7086 36 1 7.3596 1.5746 6.0396 37 1 7.6548 1.2320 8.4601 38 1 7.0289 -0.9179 9.4847 39 1 6.0988 -2.7217 8.0903 40 1 5.7950 -2.3759 5.6713 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281389345.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:55 Heat of formation + Delta-G solvation = 25.802469 kcal Electronic energy + Delta-G solvation = -20456.664699 eV Core-core repulsion = 17430.621288 eV Total energy + Delta-G solvation = -3026.043411 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.25188 -39.18452 -37.02214 -34.67099 -34.27091 -33.13064 -31.73374 -31.37197 -29.00226 -28.07002 -25.42789 -23.41993 -23.36298 -22.43932 -21.66679 -19.04711 -18.87151 -17.58982 -17.48060 -16.86786 -16.52072 -16.14741 -15.98966 -15.73324 -15.40352 -14.91145 -14.62701 -14.31369 -14.23624 -14.01285 -13.83383 -13.57149 -13.33582 -13.14095 -12.81041 -12.58283 -12.07021 -12.04895 -11.86748 -11.80028 -11.61166 -11.50670 -11.30762 -10.88590 -10.77551 -10.57129 -9.79217 -9.55086 -8.81590 -8.16130 -5.53551 0.48669 0.52924 1.23009 1.38575 1.49287 1.96168 2.07152 2.40332 2.89920 3.07242 3.44445 3.75654 3.79631 3.85398 3.97166 4.10139 4.20075 4.29914 4.31261 4.40240 4.46455 4.63693 4.68611 4.69567 4.73684 4.77514 4.90749 4.92916 4.99740 5.16256 5.20686 5.26128 5.33231 5.39140 5.61434 5.65110 5.80153 5.96144 6.16982 6.20720 6.85970 6.93802 7.05300 7.61742 8.02760 9.03503 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020180 B = 0.004522 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.159973 B = 6189.826635 C = 6707.916017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.211 4.211 3 C 0.236 3.764 4 N -0.600 5.600 5 C -0.237 4.237 6 H 0.041 0.959 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.926 3.074 10 H -0.271 1.271 11 H -0.314 1.314 12 H -0.268 1.268 13 C 0.102 3.898 14 C 0.100 3.900 15 H 0.097 0.903 16 O -0.559 6.559 17 C -0.135 4.135 18 C -0.068 4.068 19 C -0.089 4.089 20 C -0.137 4.137 21 C -0.128 4.128 22 C -0.136 4.136 23 C -0.125 4.125 24 C -0.130 4.130 25 H 0.237 0.763 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.261 0.739 29 H 0.066 0.934 30 H 0.037 0.963 31 H 0.369 0.631 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.120 0.880 37 H 0.136 0.864 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.530 -13.618 15.116 20.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.214 4.214 3 C 0.112 3.888 4 N -0.321 5.321 5 C -0.367 4.367 6 H 0.059 0.941 7 C -0.202 4.202 8 N -0.585 5.585 9 Si 0.756 3.244 10 H -0.198 1.198 11 H -0.243 1.243 12 H -0.193 1.193 13 C -0.023 4.023 14 C 0.039 3.961 15 H 0.115 0.885 16 O -0.364 6.364 17 C -0.173 4.173 18 C -0.106 4.106 19 C -0.089 4.089 20 C -0.155 4.155 21 C -0.146 4.146 22 C -0.153 4.153 23 C -0.143 4.143 24 C -0.148 4.148 25 H 0.254 0.746 26 H 0.093 0.907 27 H 0.117 0.883 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.055 0.945 31 H 0.215 0.785 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.138 0.862 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.791 -13.953 14.742 20.649 hybrid contribution -1.165 1.299 0.631 1.856 sum 2.626 -12.654 15.373 20.084 Atomic orbital electron populations 1.25591 0.96844 1.01792 1.01867 1.25450 0.97025 0.99337 0.99591 1.18326 0.81874 0.90830 0.97814 1.44122 1.74226 1.09712 1.04026 1.18534 1.32932 0.83307 1.01897 0.94093 1.25831 0.99047 0.94961 1.00394 1.69995 1.42413 0.99817 1.46284 0.86148 0.81982 0.75912 0.80357 1.19820 1.24281 1.19305 1.22027 0.96625 0.99353 0.84276 1.22476 0.89018 0.91719 0.92916 0.88523 1.86520 1.58124 1.22850 1.68869 1.22190 0.97658 1.01526 0.95948 1.20454 0.96917 1.01929 0.91284 1.20097 0.98356 0.94476 0.96017 1.21294 1.00421 0.99138 0.94669 1.21424 1.00037 0.98349 0.94800 1.21464 0.99427 0.93482 1.00959 1.21464 0.99052 1.00037 0.93748 1.21315 1.00538 0.97112 0.95829 0.74625 0.90707 0.88340 0.93004 0.91572 0.94538 0.78498 0.90080 0.92663 0.91427 0.90295 0.86209 0.84623 0.84063 0.84012 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.47 19.25 74.32 1.43 -7.04 16 2 C -0.21 -8.26 13.68 31.13 0.43 -7.83 16 3 C 0.24 9.07 6.14 84.57 0.52 9.59 16 4 N -0.60 -27.23 2.00 -712.55 -1.43 -28.66 16 5 C -0.24 -13.13 9.40 84.04 0.79 -12.34 16 6 H 0.04 2.56 8.06 -2.91 -0.02 2.54 16 7 C -0.01 -0.32 5.29 84.86 0.45 0.13 16 8 N -0.94 -57.58 13.97 21.65 0.30 -57.28 16 9 Si 0.93 45.82 25.10 68.60 1.72 47.55 16 10 H -0.27 -12.49 6.68 99.48 0.66 -11.83 16 11 H -0.31 -16.03 7.11 99.48 0.71 -15.32 16 12 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 13 C 0.10 4.03 4.20 86.38 0.36 4.40 16 14 C 0.10 3.37 3.21 30.59 0.10 3.47 16 15 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 16 O -0.56 -22.57 12.35 -148.98 -1.84 -24.41 16 17 C -0.13 -3.65 4.88 30.59 0.15 -3.50 16 18 C -0.07 -1.67 5.24 29.84 0.16 -1.52 16 19 C -0.09 -2.08 5.13 -19.87 -0.10 -2.18 16 20 C -0.14 -3.15 9.70 22.27 0.22 -2.94 16 21 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 22 C -0.14 -2.38 10.05 22.27 0.22 -2.15 16 23 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 24 C -0.13 -2.65 9.70 22.27 0.22 -2.43 16 25 H 0.24 6.13 7.80 -4.41 -0.03 6.10 16 26 H 0.07 2.90 8.03 -2.39 -0.02 2.88 16 27 H 0.10 3.05 8.08 -2.39 -0.02 3.03 16 28 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 30 H 0.04 1.60 3.38 -2.39 -0.01 1.60 16 31 H 0.37 14.67 9.05 -74.06 -0.67 14.00 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.81 7.77 -2.39 -0.02 1.80 16 35 H 0.08 1.77 8.08 -2.38 -0.02 1.75 16 36 H 0.12 2.68 8.06 -2.91 -0.02 2.66 16 37 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 38 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 39 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 40 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -68.11 341.63 4.44 -63.67 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.30 Total: 27.80 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 5.38 Total: -28.66 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -1.13 Total: -85.94 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -1.84 Total: -24.41 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.72 Total: 47.55 kcal Total: -68.11 4.44 -63.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281389345.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.469 kcal (2) G-P(sol) polarization free energy of solvation -68.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds