Wall clock time and date at job start Mon Mar 30 2020 02:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47391 * 258.82503 * 3 2 1 5 5 C 1.36932 * 120.00049 * 264.23693 * 4 3 2 6 6 H 1.08004 * 119.99905 * 196.86801 * 5 4 3 7 7 C 1.38812 * 120.00232 * 16.86349 * 5 4 3 8 8 N 1.31616 * 119.99819 * 22.15110 * 7 5 4 9 9 Si 1.86807 * 119.99848 * 202.15111 * 7 5 4 10 10 H 1.48501 * 109.47103 * 90.00538 * 9 7 5 11 11 H 1.48504 * 109.46927 * 209.99973 * 9 7 5 12 12 H 1.48498 * 109.47250 * 329.99987 * 9 7 5 13 13 C 1.46496 * 119.99720 * 84.22976 * 4 3 2 14 14 C 1.52998 * 109.47443 * 270.00444 * 13 4 3 15 15 C 1.53003 * 109.47244 * 180.02562 * 14 13 4 16 16 O 1.42896 * 109.47015 * 179.97438 * 15 14 13 17 17 C 1.42900 * 114.00115 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.47423 * 179.97438 * 17 16 15 19 19 C 1.38233 * 120.00202 * 89.99941 * 18 17 16 20 20 C 1.38234 * 120.00037 * 179.97438 * 19 18 17 21 21 C 1.38231 * 119.99954 * 359.97438 * 20 19 18 22 22 C 1.38233 * 120.00217 * 0.27296 * 21 20 19 23 23 C 1.38234 * 119.99923 * 269.97882 * 18 17 16 24 24 H 4.40643 * 5.51492 * 179.97438 * 4 1 2 25 25 H 1.09008 * 109.46770 * 138.82543 * 3 2 1 26 26 H 1.09000 * 109.47655 * 18.83011 * 3 2 1 27 27 H 0.97008 * 119.99623 * 179.97438 * 8 7 5 28 28 H 1.09006 * 109.47209 * 150.00089 * 13 4 3 29 29 H 1.09004 * 109.47031 * 30.00405 * 13 4 3 30 30 H 1.08993 * 109.47385 * 59.99862 * 14 13 4 31 31 H 1.09004 * 109.46976 * 299.99995 * 14 13 4 32 32 H 1.09001 * 109.46984 * 59.99781 * 15 14 13 33 33 H 1.09004 * 109.47008 * 299.99826 * 15 14 13 34 34 H 1.09003 * 109.46922 * 59.99643 * 17 16 15 35 35 H 1.08999 * 109.47144 * 300.00430 * 17 16 15 36 36 H 1.08004 * 119.99566 * 359.97438 * 19 18 17 37 37 H 1.08003 * 119.99469 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.99550 * 180.02562 * 21 20 19 39 39 H 1.08005 * 119.99980 * 179.72704 * 22 21 20 40 40 H 1.08003 * 120.00368 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2686 1.3550 5 6 3.4742 1.5436 1.7206 6 1 4.0790 1.7102 2.5998 7 6 3.0415 2.6221 0.9614 8 7 1.9880 2.4980 0.1823 9 14 3.9545 4.2497 1.0455 10 1 5.0233 4.2715 0.0147 11 1 3.0044 5.3636 0.7969 12 1 4.5615 4.4079 2.3915 13 6 3.2586 -0.8277 2.3188 14 6 1.9488 -0.9751 3.0955 15 6 2.0790 -2.1196 4.1026 16 8 0.8558 -2.2568 4.8284 17 6 0.8709 -3.3044 5.8002 18 6 -0.4616 -3.3579 6.5021 19 6 -1.4757 -4.1521 6.0005 20 6 -2.6978 -4.2016 6.6446 21 6 -2.9055 -3.4572 7.7907 22 6 -1.8931 -2.6590 8.2895 23 6 -0.6696 -2.6130 7.6478 24 1 -1.0501 0.0002 -0.0001 25 1 3.0089 0.7744 -0.6766 26 1 3.0098 -0.9718 -0.3317 27 1 1.6855 3.2518 -0.3480 28 1 4.0704 -0.6107 3.0132 29 1 3.4727 -1.7555 1.7881 30 1 1.1371 -1.1921 2.4013 31 1 1.7347 -0.0473 3.6262 32 1 2.8906 -1.9021 4.7968 33 1 2.2933 -3.0475 3.5723 34 1 1.6579 -3.1122 6.5294 35 1 1.0595 -4.2568 5.3048 36 1 -1.3131 -4.7340 5.1052 37 1 -3.4901 -4.8218 6.2524 38 1 -3.8602 -3.4962 8.2942 39 1 -2.0570 -2.0740 9.1825 40 1 0.1229 -1.9930 8.0402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281400447.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:51 Heat of formation + Delta-G solvation = 39.374425 kcal Electronic energy + Delta-G solvation = -19810.150861 eV Core-core repulsion = 16784.695974 eV Total energy + Delta-G solvation = -3025.454887 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.29509 -38.86465 -37.94607 -34.40132 -33.43521 -32.87156 -31.80945 -31.54293 -28.02098 -27.42439 -26.25287 -23.67791 -23.49652 -22.36925 -21.81275 -19.35484 -18.30142 -17.84656 -17.49250 -17.16621 -16.71416 -16.32876 -15.99903 -15.58217 -15.36412 -14.94140 -14.74247 -14.38151 -14.19935 -13.70605 -13.49589 -13.32420 -13.07180 -12.98720 -12.79131 -12.63326 -12.20031 -12.11759 -11.99517 -11.89631 -11.80800 -11.55340 -10.76084 -10.68825 -10.53840 -10.29316 -9.84268 -9.77688 -8.95159 -7.82466 -5.23837 0.32641 0.47933 1.48825 1.50534 1.58404 2.33432 2.53368 2.59615 2.62385 3.13746 3.30847 3.78669 3.90236 3.95913 4.09850 4.12633 4.13973 4.26187 4.33642 4.34886 4.45624 4.59379 4.64673 4.65391 4.75622 4.78583 4.87738 4.95506 5.06122 5.13675 5.30858 5.32411 5.48078 5.53051 5.58408 5.66087 5.67050 5.69653 6.08247 6.28237 6.33664 7.11463 7.36664 7.84835 8.26661 9.19377 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.022730 B = 0.003347 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.545116 B = 8363.955100 C = 8564.033658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.123 4.123 3 C 0.267 3.733 4 N -0.600 5.600 5 C -0.270 4.270 6 H 0.077 0.923 7 C -0.048 4.048 8 N -0.915 5.915 9 Si 0.962 3.038 10 H -0.283 1.283 11 H -0.303 1.303 12 H -0.272 1.272 13 C 0.151 3.849 14 C -0.125 4.125 15 C 0.074 3.926 16 O -0.411 6.411 17 C 0.098 3.902 18 C -0.110 4.110 19 C -0.116 4.116 20 C -0.131 4.131 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.117 4.117 24 H 0.215 0.785 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.246 0.754 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.029 0.971 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.129 0.871 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.358 -15.084 12.841 20.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.126 4.126 3 C 0.141 3.859 4 N -0.320 5.320 5 C -0.400 4.400 6 H 0.095 0.905 7 C -0.244 4.244 8 N -0.560 5.560 9 Si 0.791 3.209 10 H -0.210 1.210 11 H -0.230 1.230 12 H -0.197 1.197 13 C 0.025 3.975 14 C -0.165 4.165 15 C -0.003 4.003 16 O -0.332 6.332 17 C 0.022 3.978 18 C -0.110 4.110 19 C -0.134 4.134 20 C -0.149 4.149 21 C -0.139 4.139 22 C -0.150 4.150 23 C -0.135 4.135 24 H 0.232 0.768 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.147 0.853 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.161 0.839 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.502 -14.844 12.725 20.064 hybrid contribution -0.045 1.271 -0.117 1.277 sum -4.547 -13.574 12.607 19.075 Atomic orbital electron populations 1.24919 0.96365 1.07452 1.03538 1.24713 0.96125 0.94445 0.97292 1.17831 0.82665 0.98186 0.87194 1.44417 1.74587 1.04705 1.08313 1.19539 1.25581 0.83578 1.11297 0.90549 1.25592 0.97226 1.00653 1.00956 1.70308 1.22823 1.31027 1.31858 0.85346 0.77842 0.79660 0.78028 1.21010 1.23002 1.19685 1.20969 0.94204 0.90843 0.91453 1.22063 1.00806 0.96571 0.97054 1.22501 0.85946 0.98305 0.93512 1.87982 1.37207 1.54849 1.53124 1.21445 0.94565 0.91031 0.90727 1.19867 0.96046 0.98842 0.96263 1.21323 0.93394 0.98971 0.99691 1.21485 0.97232 1.00098 0.96071 1.21562 0.99930 0.96081 0.96365 1.21479 0.93064 0.99521 1.00908 1.21322 0.98522 0.98151 0.95549 0.76778 0.91179 0.91358 0.94475 0.92120 0.91263 0.94223 0.95214 0.92059 0.91587 0.91426 0.91182 0.85291 0.83764 0.83490 0.83892 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -14.36 19.25 74.32 1.43 -12.92 16 2 C -0.12 -6.14 10.54 31.13 0.33 -5.81 16 3 C 0.27 12.79 5.45 84.57 0.46 13.26 16 4 N -0.60 -29.34 2.50 -712.55 -1.78 -31.12 16 5 C -0.27 -14.59 9.66 84.03 0.81 -13.77 16 6 H 0.08 4.02 7.90 -2.91 -0.02 3.99 16 7 C -0.05 -2.66 4.85 84.86 0.41 -2.25 16 8 N -0.92 -53.55 9.50 21.65 0.21 -53.34 16 9 Si 0.96 44.94 29.61 68.60 2.03 46.97 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.15 5.90 5.70 86.38 0.49 6.39 16 14 C -0.12 -4.96 5.76 30.59 0.18 -4.78 16 15 C 0.07 2.24 5.94 71.98 0.43 2.67 16 16 O -0.41 -13.54 10.33 -148.98 -1.54 -15.07 16 17 C 0.10 2.40 6.06 71.24 0.43 2.83 16 18 C -0.11 -2.72 5.51 -19.87 -0.11 -2.83 16 19 C -0.12 -2.60 9.70 22.27 0.22 -2.39 16 20 C -0.13 -2.49 10.05 22.27 0.22 -2.26 16 21 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 22 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 23 C -0.12 -2.69 9.70 22.27 0.22 -2.47 16 24 H 0.22 8.50 7.80 -4.41 -0.03 8.47 16 25 H 0.07 3.72 6.42 -2.38 -0.02 3.70 16 26 H 0.07 2.77 7.98 -2.39 -0.02 2.75 16 27 H 0.25 14.23 8.31 -92.70 -0.77 13.46 16 28 H 0.06 2.22 8.03 -2.38 -0.02 2.20 16 29 H 0.07 2.30 7.95 -2.39 -0.02 2.29 16 30 H 0.04 1.76 7.20 -2.39 -0.02 1.74 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.43 8.08 -2.39 -0.02 1.41 16 35 H 0.07 1.44 8.09 -2.39 -0.02 1.43 16 36 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 38 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 40 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -67.62 344.00 5.87 -61.75 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.99 Total: 19.41 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 5.96 Total: -28.60 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -1.58 Total: -84.46 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: -1.54 Total: -15.07 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -67.62 5.87 -61.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281400447.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.127 kcal (2) G-P(sol) polarization free energy of solvation -67.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds