Wall clock time and date at job start Mon Mar 30 2020 01:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47322 * 110.27459 * 3 2 1 5 5 C 1.37093 * 120.00302 * 278.17324 * 4 3 2 6 6 H 1.08000 * 120.00418 * 182.97817 * 5 4 3 7 7 C 1.38953 * 119.99875 * 2.97293 * 5 4 3 8 8 N 1.31416 * 120.00053 * 8.20292 * 7 5 4 9 9 Si 1.86797 * 119.99876 * 188.20738 * 7 5 4 10 10 H 1.48495 * 109.47299 * 89.99936 * 9 7 5 11 11 H 1.48507 * 109.46730 * 209.99822 * 9 7 5 12 12 H 1.48502 * 109.47068 * 329.99656 * 9 7 5 13 13 C 1.34784 * 119.99623 * 98.17047 * 4 3 2 14 14 O 1.21290 * 119.99419 * 178.57657 * 13 4 3 15 15 C 1.50698 * 119.99851 * 358.84920 * 13 4 3 16 16 C 1.52996 * 109.47392 * 310.97802 * 15 13 4 17 17 C 1.47204 * 109.47553 * 306.20732 * 16 15 13 18 18 C 3.46907 * 73.38924 * 152.94793 * 2 1 3 19 19 C 1.53008 * 109.46605 * 190.98349 * 15 13 4 20 20 C 1.52996 * 109.46799 * 299.99816 * 19 15 13 21 21 C 1.53003 * 109.47658 * 299.99905 * 20 19 15 22 22 C 1.53006 * 109.46603 * 60.00313 * 21 20 19 23 23 C 1.52991 * 109.47376 * 70.98467 * 15 13 4 24 24 H 4.40646 * 5.51441 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.47134 * 350.27272 * 3 2 1 26 26 H 1.08998 * 109.47017 * 230.27687 * 3 2 1 27 27 H 0.96993 * 120.00112 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.46859 * 66.20658 * 16 15 13 29 29 H 1.09000 * 109.47118 * 186.20306 * 16 15 13 30 30 H 4.20258 * 65.80132 * 144.01479 * 2 1 3 31 31 H 1.08993 * 109.46949 * 60.00046 * 19 15 13 32 32 H 1.08998 * 109.46679 * 180.02562 * 19 15 13 33 33 H 1.09007 * 109.47099 * 180.02562 * 20 19 15 34 34 H 1.09001 * 109.47503 * 60.00875 * 20 19 15 35 35 H 1.09003 * 109.46788 * 300.00664 * 21 20 19 36 36 H 1.08997 * 109.47426 * 180.02562 * 21 20 19 37 37 H 1.09003 * 109.46603 * 180.02562 * 22 21 20 38 38 H 1.08992 * 109.47230 * 60.00105 * 22 21 20 39 39 H 1.08998 * 109.47692 * 179.97438 * 23 15 13 40 40 H 1.09005 * 109.47389 * 299.99712 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.4795 -1.2956 5 6 3.2039 -0.3794 -2.3619 6 1 3.6087 -0.0393 -3.3037 7 6 2.7539 -1.6875 -2.2309 8 7 2.1160 -2.0571 -1.1431 9 14 3.0559 -2.9206 -3.6011 10 1 4.3529 -3.6068 -3.3726 11 1 1.9609 -3.9237 -3.6145 12 1 3.0940 -2.2118 -4.9055 13 6 3.5146 1.7645 -1.4393 14 8 3.9430 2.1545 -2.5049 15 6 3.4134 2.7150 -0.2743 16 6 2.0228 2.6053 0.3543 17 6 0.9980 2.8026 -0.6839 18 6 0.1823 2.9606 -1.5119 19 6 3.6404 4.1470 -0.7633 20 6 5.0310 4.2567 -1.3918 21 6 6.0919 3.8999 -0.3487 22 6 5.8648 2.4679 0.1402 23 6 4.4742 2.3581 0.7688 24 1 -1.0501 0.0001 0.0002 25 1 3.0097 -1.0121 0.1736 26 1 3.0090 0.6576 0.7904 27 1 1.8022 -2.9703 -1.0515 28 1 1.9027 1.6180 0.8003 29 1 1.9111 3.3681 1.1248 30 1 -0.5486 3.1018 -2.2524 31 1 2.8846 4.4012 -1.5064 32 1 3.5677 4.8344 0.0794 33 1 5.1929 5.2770 -1.7398 34 1 5.1042 3.5693 -2.2345 35 1 6.0186 4.5874 0.4939 36 1 7.0826 3.9785 -0.7964 37 1 6.6204 2.2138 0.8837 38 1 5.9380 1.7804 -0.7023 39 1 4.4013 3.0459 1.6113 40 1 4.3125 1.3380 1.1172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281617274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:55 Heat of formation + Delta-G solvation = 107.572792 kcal Electronic energy + Delta-G solvation = -22629.784265 eV Core-core repulsion = 19607.286681 eV Total energy + Delta-G solvation = -3022.497584 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.38026 -36.74775 -35.43447 -33.93869 -31.83021 -31.43867 -30.61421 -30.10561 -26.67352 -26.09620 -24.88629 -22.27005 -21.82461 -20.34613 -18.30274 -17.83895 -17.58425 -16.53157 -15.45898 -15.27993 -14.56854 -14.41510 -14.22829 -13.74094 -13.57492 -13.32071 -13.18233 -12.64581 -12.33441 -12.15207 -11.74237 -11.50359 -11.44419 -11.19991 -11.15203 -10.84879 -10.55163 -10.46530 -10.24860 -10.18393 -10.03288 -9.67814 -9.39434 -9.35881 -9.21133 -9.02791 -8.61135 -8.02753 -7.88177 -6.18248 -3.79682 3.16122 3.25624 3.30477 3.51569 3.56852 3.75236 3.98134 4.18813 4.24325 4.82941 4.96173 5.10498 5.14054 5.27824 5.33977 5.55505 5.58836 5.73114 5.78123 5.87121 5.93813 5.96981 6.00916 6.08601 6.19527 6.24222 6.29766 6.42757 6.50269 6.56456 6.68774 6.72455 6.75983 6.83225 7.06837 7.19542 7.26568 7.59788 8.06355 8.36640 8.50249 8.94802 9.19602 9.43658 9.97636 10.71335 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018260 B = 0.008508 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.063188 B = 3290.274832 C = 3949.647541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.093 4.093 3 C 0.204 3.796 4 N -0.438 5.438 5 C -0.295 4.295 6 H 0.105 0.895 7 C 0.025 3.975 8 N -0.879 5.879 9 Si 0.928 3.072 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.470 3.530 14 O -0.578 6.578 15 C -0.064 4.064 16 C -0.035 4.035 17 C -0.154 4.154 18 C -0.223 4.223 19 C -0.082 4.082 20 C -0.141 4.141 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.113 4.113 24 H 0.193 0.807 25 H 0.134 0.866 26 H 0.070 0.930 27 H 0.266 0.734 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.206 0.794 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.112 0.888 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.792 6.780 6.626 9.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.095 4.095 3 C 0.081 3.919 4 N -0.156 5.156 5 C -0.423 4.423 6 H 0.122 0.878 7 C -0.176 4.176 8 N -0.521 5.521 9 Si 0.756 3.244 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.196 1.196 13 C 0.259 3.741 14 O -0.463 6.463 15 C -0.068 4.068 16 C -0.071 4.071 17 C -0.154 4.154 18 C -0.240 4.240 19 C -0.120 4.120 20 C -0.178 4.178 21 C -0.149 4.149 22 C -0.157 4.157 23 C -0.151 4.151 24 H 0.210 0.790 25 H 0.151 0.849 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.136 0.864 29 H 0.097 0.903 30 H 0.223 0.777 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.130 0.870 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.956 6.752 6.136 9.331 hybrid contribution -0.630 -0.766 -0.743 1.239 sum 1.326 5.986 5.393 8.165 Atomic orbital electron populations 1.24133 0.95276 1.07082 1.02866 1.22953 0.94192 0.94682 0.97679 1.19479 0.84428 1.02685 0.85272 1.43664 1.54725 1.07652 1.09515 1.19785 1.38704 0.90802 0.93008 0.87752 1.25228 0.96093 0.98137 0.98138 1.69962 1.36927 1.18681 1.26513 0.85878 0.77780 0.79871 0.80906 1.20428 1.21082 1.19645 1.19587 0.83566 0.82063 0.88914 1.90352 1.51044 1.75805 1.29074 1.20667 0.93822 0.96763 0.95503 1.19653 0.89043 1.04807 0.93635 1.22529 0.96406 0.98756 0.97665 1.24468 0.99075 1.02644 0.97806 1.21246 0.98071 0.93336 0.99372 1.21983 0.93436 1.01640 1.00757 1.21474 0.98698 0.96278 0.98493 1.21511 0.95837 0.97681 1.00628 1.21768 0.94403 1.01903 0.96976 0.78967 0.84934 0.91238 0.92309 0.86373 0.90323 0.77656 0.92020 0.92939 0.93660 0.87045 0.93136 0.92792 0.92446 0.91093 0.91583 0.90743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.81 18.15 29.55 0.54 -5.28 16 2 C -0.09 -2.08 7.71 -37.13 -0.29 -2.37 16 3 C 0.20 4.47 4.46 -6.83 -0.03 4.44 16 4 N -0.44 -10.77 2.61 -117.94 -0.31 -11.08 16 5 C -0.30 -8.03 9.50 -14.93 -0.14 -8.17 16 6 H 0.10 3.01 7.18 -52.49 -0.38 2.64 16 7 C 0.02 0.64 5.35 -17.46 -0.09 0.55 16 8 N -0.88 -22.48 8.14 55.50 0.45 -22.03 16 9 Si 0.93 20.84 29.56 -169.99 -5.02 15.81 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.47 10.92 4.09 -10.98 -0.04 10.87 16 14 O -0.58 -15.17 12.90 5.55 0.07 -15.09 16 15 C -0.06 -1.17 0.28 -155.66 -0.04 -1.21 16 16 C -0.04 -0.62 4.11 -29.52 -0.12 -0.75 16 17 C -0.15 -3.03 9.01 -37.13 -0.33 -3.37 16 18 C -0.22 -4.27 19.13 29.54 0.57 -3.71 16 19 C -0.08 -1.43 4.29 -26.73 -0.11 -1.54 16 20 C -0.14 -2.41 5.63 -26.73 -0.15 -2.56 16 21 C -0.11 -1.65 5.92 -26.73 -0.16 -1.80 16 22 C -0.12 -1.86 5.70 -26.73 -0.15 -2.01 16 23 C -0.11 -1.75 4.51 -26.73 -0.12 -1.87 16 24 H 0.19 3.47 7.80 -54.08 -0.42 3.05 16 25 H 0.13 3.14 5.89 -51.93 -0.31 2.83 16 26 H 0.07 1.30 2.70 -51.93 -0.14 1.16 16 27 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 28 H 0.12 2.14 2.81 -51.93 -0.15 1.99 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.21 3.27 7.80 -54.09 -0.42 2.85 16 31 H 0.06 1.19 7.42 -51.93 -0.39 0.80 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.11 2.32 5.13 -51.93 -0.27 2.06 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.33 7.22 -51.93 -0.37 0.96 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.15 5.45 -51.93 -0.28 0.87 16 LS Contribution 307.06 15.07 4.63 4.63 Total: -1.00 -29.85 307.06 -6.09 -35.94 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.22 Total: 10.61 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -0.69 Total: -18.79 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.14 Total: -33.10 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.07 Total: -15.09 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.85 -6.09 -35.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281617274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.510 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds