Wall clock time and date at job start Mon Mar 30 2020 01:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47322 * 110.27459 * 3 2 1 5 5 C 1.37093 * 120.00302 * 278.17324 * 4 3 2 6 6 H 1.08000 * 120.00418 * 182.97817 * 5 4 3 7 7 C 1.38953 * 119.99875 * 2.97293 * 5 4 3 8 8 N 1.31416 * 120.00053 * 8.20292 * 7 5 4 9 9 Si 1.86797 * 119.99876 * 188.20738 * 7 5 4 10 10 H 1.48495 * 109.47299 * 89.99936 * 9 7 5 11 11 H 1.48507 * 109.46730 * 209.99822 * 9 7 5 12 12 H 1.48502 * 109.47068 * 329.99656 * 9 7 5 13 13 C 1.34784 * 119.99623 * 98.17047 * 4 3 2 14 14 O 1.21290 * 119.99419 * 178.57657 * 13 4 3 15 15 C 1.50698 * 119.99851 * 358.84920 * 13 4 3 16 16 C 1.52996 * 109.47392 * 310.97802 * 15 13 4 17 17 C 1.47204 * 109.47553 * 306.20732 * 16 15 13 18 18 C 3.46907 * 73.38924 * 152.94793 * 2 1 3 19 19 C 1.53008 * 109.46605 * 190.98349 * 15 13 4 20 20 C 1.52996 * 109.46799 * 299.99816 * 19 15 13 21 21 C 1.53003 * 109.47658 * 299.99905 * 20 19 15 22 22 C 1.53006 * 109.46603 * 60.00313 * 21 20 19 23 23 C 1.52991 * 109.47376 * 70.98467 * 15 13 4 24 24 H 4.40646 * 5.51441 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.47134 * 350.27272 * 3 2 1 26 26 H 1.08998 * 109.47017 * 230.27687 * 3 2 1 27 27 H 0.96993 * 120.00112 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.46859 * 66.20658 * 16 15 13 29 29 H 1.09000 * 109.47118 * 186.20306 * 16 15 13 30 30 H 4.20258 * 65.80132 * 144.01479 * 2 1 3 31 31 H 1.08993 * 109.46949 * 60.00046 * 19 15 13 32 32 H 1.08998 * 109.46679 * 180.02562 * 19 15 13 33 33 H 1.09007 * 109.47099 * 180.02562 * 20 19 15 34 34 H 1.09001 * 109.47503 * 60.00875 * 20 19 15 35 35 H 1.09003 * 109.46788 * 300.00664 * 21 20 19 36 36 H 1.08997 * 109.47426 * 180.02562 * 21 20 19 37 37 H 1.09003 * 109.46603 * 180.02562 * 22 21 20 38 38 H 1.08992 * 109.47230 * 60.00105 * 22 21 20 39 39 H 1.08998 * 109.47692 * 179.97438 * 23 15 13 40 40 H 1.09005 * 109.47389 * 299.99712 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1341 0.4795 -1.2956 5 6 3.2039 -0.3794 -2.3619 6 1 3.6087 -0.0393 -3.3037 7 6 2.7539 -1.6875 -2.2309 8 7 2.1160 -2.0571 -1.1431 9 14 3.0559 -2.9206 -3.6011 10 1 4.3529 -3.6068 -3.3726 11 1 1.9609 -3.9237 -3.6145 12 1 3.0940 -2.2118 -4.9055 13 6 3.5146 1.7645 -1.4393 14 8 3.9430 2.1545 -2.5049 15 6 3.4134 2.7150 -0.2743 16 6 2.0228 2.6053 0.3543 17 6 0.9980 2.8026 -0.6839 18 6 0.1823 2.9606 -1.5119 19 6 3.6404 4.1470 -0.7633 20 6 5.0310 4.2567 -1.3918 21 6 6.0919 3.8999 -0.3487 22 6 5.8648 2.4679 0.1402 23 6 4.4742 2.3581 0.7688 24 1 -1.0501 0.0001 0.0002 25 1 3.0097 -1.0121 0.1736 26 1 3.0090 0.6576 0.7904 27 1 1.8022 -2.9703 -1.0515 28 1 1.9027 1.6180 0.8003 29 1 1.9111 3.3681 1.1248 30 1 -0.5486 3.1018 -2.2524 31 1 2.8846 4.4012 -1.5064 32 1 3.5677 4.8344 0.0794 33 1 5.1929 5.2770 -1.7398 34 1 5.1042 3.5693 -2.2345 35 1 6.0186 4.5874 0.4939 36 1 7.0826 3.9785 -0.7964 37 1 6.6204 2.2138 0.8837 38 1 5.9380 1.7804 -0.7023 39 1 4.4013 3.0459 1.6113 40 1 4.3125 1.3380 1.1172 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281617274.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:54 Heat of formation + Delta-G solvation = 91.646364 kcal Electronic energy + Delta-G solvation = -22630.474887 eV Core-core repulsion = 19607.286681 eV Total energy + Delta-G solvation = -3023.188206 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.95153 -38.33108 -37.24595 -35.44585 -33.63077 -33.11802 -32.13762 -31.44538 -28.36892 -27.54351 -26.71164 -23.60987 -23.37762 -21.73683 -19.93393 -19.64605 -19.01725 -18.29775 -17.24353 -16.72074 -16.18850 -15.99923 -15.85573 -15.41727 -14.96856 -14.85186 -14.63999 -14.23545 -13.89756 -13.63625 -13.19686 -13.04197 -12.93460 -12.83669 -12.70890 -12.51854 -12.34396 -12.14720 -11.83396 -11.56401 -11.41736 -11.20644 -11.05695 -10.82309 -10.73837 -10.57487 -10.34410 -9.82087 -9.76540 -8.13766 -5.83141 1.34632 1.38668 1.48951 2.00148 2.02805 2.06021 2.21940 2.39714 2.51885 3.14599 3.25003 3.59922 3.70388 3.91750 4.00135 4.01157 4.22930 4.35191 4.45821 4.52864 4.59773 4.65906 4.73729 4.79216 4.85154 4.95921 5.00889 5.11882 5.18148 5.23329 5.30677 5.40227 5.44327 5.46290 5.50453 5.52721 5.55286 5.84349 6.12222 6.56051 6.89457 7.23446 7.26363 7.56680 8.12923 8.71014 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.018260 B = 0.008508 C = 0.007088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.063188 B = 3290.274832 C = 3949.647541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.120 4.120 3 C 0.207 3.793 4 N -0.452 5.452 5 C -0.332 4.332 6 H 0.070 0.930 7 C -0.002 4.002 8 N -0.881 5.881 9 Si 0.982 3.018 10 H -0.268 1.268 11 H -0.276 1.276 12 H -0.284 1.284 13 C 0.465 3.535 14 O -0.620 6.620 15 C -0.058 4.058 16 C -0.037 4.037 17 C -0.173 4.173 18 C -0.243 4.243 19 C -0.080 4.080 20 C -0.143 4.143 21 C -0.106 4.106 22 C -0.120 4.120 23 C -0.112 4.112 24 H 0.219 0.781 25 H 0.112 0.888 26 H 0.106 0.894 27 H 0.268 0.732 28 H 0.114 0.886 29 H 0.120 0.880 30 H 0.226 0.774 31 H 0.032 0.968 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.024 0.976 39 H 0.112 0.888 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.768 7.714 9.133 12.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 C -0.122 4.122 3 C 0.086 3.914 4 N -0.169 5.169 5 C -0.460 4.460 6 H 0.089 0.911 7 C -0.202 4.202 8 N -0.521 5.521 9 Si 0.807 3.193 10 H -0.194 1.194 11 H -0.201 1.201 12 H -0.209 1.209 13 C 0.255 3.745 14 O -0.507 6.507 15 C -0.061 4.061 16 C -0.073 4.073 17 C -0.173 4.173 18 C -0.260 4.260 19 C -0.118 4.118 20 C -0.180 4.180 21 C -0.143 4.143 22 C -0.157 4.157 23 C -0.149 4.149 24 H 0.236 0.764 25 H 0.130 0.870 26 H 0.123 0.877 27 H 0.078 0.922 28 H 0.132 0.868 29 H 0.138 0.862 30 H 0.242 0.758 31 H 0.051 0.949 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.043 0.957 39 H 0.130 0.870 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.924 7.679 8.674 11.743 hybrid contribution -0.632 -1.024 -1.581 1.987 sum 1.292 6.655 7.092 9.811 Atomic orbital electron populations 1.24834 0.96138 1.06045 1.01803 1.23187 0.94700 0.95637 0.98638 1.19481 0.84582 1.02364 0.85001 1.43808 1.55312 1.08054 1.09744 1.19592 1.40785 0.92405 0.93181 0.91150 1.25796 0.95542 0.98766 1.00119 1.70103 1.36220 1.18840 1.26946 0.85101 0.78219 0.77903 0.78097 1.19366 1.20106 1.20901 1.20609 0.81608 0.82233 0.90011 1.90352 1.52293 1.76661 1.31403 1.20686 0.95526 0.95705 0.94181 1.19790 0.87696 1.05915 0.93892 1.23215 0.96922 0.98792 0.98401 1.25216 0.99748 1.02794 0.98231 1.21268 0.97119 0.93400 1.00002 1.21891 0.94628 1.01286 1.00200 1.21452 0.97912 0.96175 0.98761 1.21520 0.97065 0.97384 0.99765 1.21840 0.92923 1.02967 0.97171 0.76396 0.87036 0.87711 0.92168 0.86832 0.86185 0.75767 0.94891 0.88919 0.92145 0.91719 0.89662 0.92253 0.89503 0.95741 0.87008 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.07 18.15 74.32 1.35 -9.72 16 2 C -0.12 -5.28 7.71 31.12 0.24 -5.04 16 3 C 0.21 9.10 4.46 84.57 0.38 9.48 16 4 N -0.45 -22.86 2.61 -645.42 -1.68 -24.55 16 5 C -0.33 -18.89 9.50 84.04 0.80 -18.09 16 6 H 0.07 4.38 7.18 -2.91 -0.02 4.36 16 7 C 0.00 -0.10 5.35 84.93 0.45 0.36 16 8 N -0.88 -45.29 8.14 21.66 0.18 -45.11 16 9 Si 0.98 43.57 29.56 68.60 2.03 45.60 16 10 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 13 C 0.46 22.20 4.09 87.66 0.36 22.55 16 14 O -0.62 -34.51 12.90 -3.06 -0.04 -34.55 16 15 C -0.06 -2.02 0.28 -52.93 -0.01 -2.03 16 16 C -0.04 -1.22 4.11 28.79 0.12 -1.10 16 17 C -0.17 -6.67 9.01 31.14 0.28 -6.39 16 18 C -0.24 -9.24 19.13 74.33 1.42 -7.82 16 19 C -0.08 -2.63 4.29 30.60 0.13 -2.50 16 20 C -0.14 -4.76 5.63 30.59 0.17 -4.58 16 21 C -0.11 -2.81 5.92 30.60 0.18 -2.63 16 22 C -0.12 -3.50 5.70 30.60 0.17 -3.33 16 23 C -0.11 -3.10 4.51 30.59 0.14 -2.97 16 24 H 0.22 7.41 7.80 -4.41 -0.03 7.38 16 25 H 0.11 5.34 5.89 -2.39 -0.01 5.33 16 26 H 0.11 3.77 2.70 -2.39 -0.01 3.76 16 27 H 0.27 13.18 8.31 -92.71 -0.77 12.41 16 28 H 0.11 3.86 2.81 -2.38 -0.01 3.85 16 29 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 30 H 0.23 7.09 7.80 -4.42 -0.03 7.06 16 31 H 0.03 1.25 7.42 -2.39 -0.02 1.23 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.06 2.82 5.13 -2.39 -0.01 2.81 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.02 0.92 7.22 -2.39 -0.02 0.91 16 39 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.07 2.03 5.45 -2.38 -0.01 2.02 16 Total: -1.00 -68.82 307.06 7.70 -61.13 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 1.04 Total: 31.29 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 6.18 Total: -33.80 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: -1.51 Total: -69.66 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.04 Total: -34.55 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -68.82 7.70 -61.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281617274.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.772 kcal (2) G-P(sol) polarization free energy of solvation -68.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds