Wall clock time and date at job start Mon Mar 30 2020 01:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47100 * 2 1 4 4 C 1.50700 * 109.46984 * 120.00036 * 2 1 3 5 5 O 1.21280 * 119.99836 * 120.00118 * 4 2 1 6 6 N 1.34778 * 120.00054 * 300.27673 * 4 2 1 7 7 C 1.39244 * 119.99848 * 175.43129 * 6 4 2 8 8 C 1.39481 * 119.82969 * 215.01250 * 7 6 4 9 9 C 1.36378 * 120.16352 * 179.71635 * 8 7 6 10 10 C 1.40871 * 119.82916 * 0.58510 * 9 8 7 11 11 C 1.41150 * 120.16360 * 179.67521 * 10 9 8 12 12 H 1.07996 * 119.99589 * 214.79973 * 11 10 9 13 13 C 1.39908 * 119.99877 * 34.79684 * 11 10 9 14 14 N 1.30865 * 120.00091 * 355.55844 * 13 11 10 15 15 Si 1.86804 * 119.99594 * 175.56112 * 13 11 10 16 16 H 1.48497 * 109.47293 * 59.99860 * 15 13 11 17 17 H 1.48501 * 109.46882 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46897 * 299.99834 * 15 13 11 19 19 C 1.40874 * 119.67102 * 359.69022 * 10 9 8 20 20 C 1.36373 * 119.82630 * 0.02562 * 19 10 9 21 21 C 1.53005 * 109.47379 * 240.00178 * 2 1 3 22 22 C 1.52988 * 117.49944 * 128.74839 * 21 2 1 23 23 C 1.52993 * 117.49780 * 60.08607 * 21 2 1 24 24 H 1.08994 * 109.47532 * 300.00176 * 1 2 3 25 25 H 1.09000 * 109.47047 * 60.00180 * 1 2 3 26 26 H 1.09000 * 109.46899 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47402 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47373 * 300.00505 * 3 2 1 29 29 H 1.09002 * 109.46903 * 59.99847 * 3 2 1 30 30 H 0.96996 * 119.99939 * 355.43355 * 6 4 2 31 31 H 1.08001 * 119.91866 * 359.97438 * 8 7 6 32 32 H 1.08000 * 120.08649 * 180.25186 * 9 8 7 33 33 H 0.97003 * 119.99530 * 179.97438 * 14 13 11 34 34 H 1.07996 * 120.08530 * 179.97438 * 19 10 9 35 35 H 1.07997 * 119.91283 * 179.97438 * 20 19 10 36 36 H 1.08997 * 115.54758 * 274.41966 * 21 2 1 37 37 H 1.09004 * 117.49894 * 359.97438 * 22 21 2 38 38 H 1.09004 * 117.50231 * 145.02378 * 22 21 2 39 39 H 1.09007 * 117.49917 * 214.98194 * 23 21 2 40 40 H 1.09004 * 117.50207 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1192 6 7 1.7021 -0.2532 2.4546 7 6 2.0860 -0.9626 3.5896 8 6 1.2466 -0.9973 4.7030 9 6 1.6132 -1.6947 5.8162 10 6 2.8487 -2.3709 5.8440 11 6 3.2383 -3.0893 6.9949 12 1 4.2786 -3.1252 7.2826 13 6 2.2766 -3.7546 7.7631 14 7 1.0075 -3.6399 7.4654 15 14 2.8045 -4.8066 9.2136 16 1 3.5300 -3.9642 10.1981 17 1 1.6048 -5.3995 9.8576 18 1 3.6982 -5.8930 8.7379 19 6 3.6936 -2.3265 4.7176 20 6 3.3107 -1.6297 3.6096 21 6 2.0401 -0.7212 -1.2493 22 6 3.0764 0.0039 -2.1100 23 6 1.6375 -0.1483 -2.6096 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.1970 0.5699 2.5449 31 1 0.3021 -0.4739 4.6821 32 1 0.9605 -1.7240 6.6761 33 1 0.3408 -4.1015 7.9978 34 1 4.6424 -2.8421 4.7319 35 1 3.9575 -1.5943 2.7455 36 1 2.1253 -1.8046 -1.1648 37 1 3.3945 0.9951 -1.7865 38 1 3.8433 -0.6023 -2.5922 39 1 1.4583 -0.8547 -3.4202 40 1 1.0089 0.7422 -2.6146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000287085901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:05 Heat of formation + Delta-G solvation = -15.056120 kcal Electronic energy + Delta-G solvation = -20651.500875 eV Core-core repulsion = 17623.685703 eV Total energy + Delta-G solvation = -3027.815172 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.67104 -39.63239 -38.35203 -36.17118 -34.95769 -33.72701 -31.48241 -30.63123 -28.37265 -26.98046 -25.36398 -23.63524 -23.07441 -22.85093 -21.67890 -19.73087 -19.24481 -18.45654 -17.68725 -17.02935 -16.70633 -16.20572 -15.70374 -15.52640 -15.12589 -14.85553 -14.49362 -14.06247 -13.79632 -13.68455 -13.57014 -13.23305 -13.14458 -13.01376 -12.86025 -12.75035 -12.47760 -12.42705 -11.97836 -11.77397 -11.72861 -11.40437 -11.24216 -11.20125 -10.88103 -10.71744 -10.42637 -9.48230 -8.73643 -8.51132 -6.34172 0.79230 1.11970 1.38904 1.46518 1.50995 1.81583 2.23188 2.30838 2.79562 2.97643 3.58468 3.63633 3.73542 3.97462 4.09380 4.15991 4.33140 4.38339 4.48621 4.53475 4.72643 4.79619 4.87580 4.89575 4.93731 4.98010 5.04994 5.13091 5.13661 5.24032 5.29051 5.32410 5.35493 5.39724 5.43635 5.68257 5.90371 6.01807 6.13058 6.38039 6.66130 6.73950 6.95607 6.98982 7.41160 8.41516 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.043595 B = 0.003661 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.126133 B = 7645.717463 C = 7859.194136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.038 4.038 3 C -0.143 4.143 4 C 0.506 3.494 5 O -0.576 6.576 6 N -0.643 5.643 7 C 0.021 3.979 8 C -0.119 4.119 9 C -0.158 4.158 10 C 0.068 3.932 11 C -0.501 4.501 12 H 0.072 0.928 13 C 0.028 3.972 14 N -0.841 5.841 15 Si 0.989 3.011 16 H -0.257 1.257 17 H -0.267 1.267 18 H -0.266 1.266 19 C -0.222 4.222 20 C -0.099 4.099 21 C -0.157 4.157 22 C -0.185 4.185 23 C -0.151 4.151 24 H 0.072 0.928 25 H 0.096 0.904 26 H 0.043 0.957 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.415 0.585 31 H 0.126 0.874 32 H 0.120 0.880 33 H 0.285 0.715 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.796 10.868 -13.877 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.041 4.041 3 C -0.200 4.200 4 C 0.295 3.705 5 O -0.455 6.455 6 N -0.287 5.287 7 C -0.073 4.073 8 C -0.139 4.139 9 C -0.178 4.178 10 C 0.066 3.934 11 C -0.531 4.531 12 H 0.090 0.910 13 C -0.184 4.184 14 N -0.469 5.469 15 Si 0.810 3.190 16 H -0.182 1.182 17 H -0.191 1.191 18 H -0.191 1.191 19 C -0.242 4.242 20 C -0.119 4.119 21 C -0.176 4.176 22 C -0.222 4.222 23 C -0.187 4.187 24 H 0.091 0.909 25 H 0.115 0.885 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.253 0.747 31 H 0.144 0.856 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.130 0.870 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.565 10.117 -13.911 17.567 hybrid contribution 0.252 -0.763 0.869 1.184 sum -3.312 9.354 -13.043 16.388 Atomic orbital electron populations 1.21868 0.90614 1.02404 1.04428 1.20230 0.98046 0.96480 0.89363 1.22039 1.01374 0.91969 1.04596 1.21440 0.79667 0.84085 0.85347 1.90644 1.39139 1.28735 1.87018 1.42946 1.55815 1.26301 1.03677 1.17364 0.95276 1.05684 0.88929 1.20573 0.98243 1.01564 0.93543 1.21182 0.99103 0.98796 0.98701 1.18018 0.92653 0.90304 0.92457 1.19708 0.95295 1.29370 1.08765 0.90966 1.26735 0.94281 0.97141 1.00194 1.69816 1.02102 1.37136 1.37828 0.85152 0.78666 0.78227 0.76995 1.18167 1.19132 1.19097 1.20927 1.01942 1.07014 0.94336 1.20496 0.95328 0.99054 0.97017 1.21947 1.06162 0.98350 0.91107 1.23228 0.93046 1.02554 1.03342 1.23083 0.97338 1.03431 0.94892 0.90878 0.88503 0.93746 0.92621 0.88469 0.90753 0.74726 0.85642 0.86223 0.90437 0.88789 0.87775 0.90300 0.87005 0.89535 0.88234 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.21 71.98 0.59 -1.87 16 2 C -0.04 -0.87 0.73 -52.93 -0.04 -0.91 16 3 C -0.14 -2.35 6.97 71.98 0.50 -1.85 16 4 C 0.51 17.49 6.31 87.66 0.55 18.04 16 5 O -0.58 -25.90 13.07 -3.03 -0.04 -25.94 16 6 N -0.64 -21.88 5.08 -303.11 -1.54 -23.42 16 7 C 0.02 0.94 6.31 38.56 0.24 1.18 16 8 C -0.12 -5.43 9.90 22.14 0.22 -5.21 16 9 C -0.16 -8.37 8.61 22.48 0.19 -8.18 16 10 C 0.07 3.84 5.55 -21.27 -0.12 3.72 16 11 C -0.50 -28.08 9.02 23.39 0.21 -27.87 16 12 H 0.07 3.91 7.85 -2.91 -0.02 3.89 16 13 C 0.03 1.48 5.42 85.24 0.46 1.94 16 14 N -0.84 -44.95 10.60 21.82 0.23 -44.72 16 15 Si 0.99 39.68 29.56 68.60 2.03 41.71 16 16 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 17 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 18 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 19 C -0.22 -11.97 9.74 22.48 0.22 -11.76 16 20 C -0.10 -4.96 8.61 22.13 0.19 -4.77 16 21 C -0.16 -3.73 4.75 -10.80 -0.05 -3.78 16 22 C -0.18 -3.55 9.57 30.61 0.29 -3.26 16 23 C -0.15 -2.36 9.38 30.62 0.29 -2.07 16 24 H 0.07 1.15 7.66 -2.39 -0.02 1.13 16 25 H 0.10 1.18 7.29 -2.39 -0.02 1.17 16 26 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 1.05 6.97 -2.39 -0.02 1.04 16 28 H 0.10 1.05 7.07 -2.39 -0.02 1.04 16 29 H 0.07 1.05 7.48 -2.39 -0.02 1.03 16 30 H 0.42 10.53 7.67 -92.71 -0.71 9.82 16 31 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 32 H 0.12 6.58 6.13 -2.91 -0.02 6.56 16 33 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 34 H 0.09 4.89 8.06 -2.91 -0.02 4.87 16 35 H 0.10 5.23 6.22 -2.91 -0.02 5.21 16 36 H 0.08 2.45 7.47 -2.39 -0.02 2.43 16 37 H 0.11 1.85 5.85 -2.38 -0.01 1.83 16 38 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.12 1.28 7.07 -2.38 -0.02 1.27 16 Total: -1.00 -69.08 322.30 4.78 -64.31 By element: Atomic # 1 Polarization: 34.36 SS G_CDS: 0.34 Total: 34.70 kcal Atomic # 6 Polarization: -50.40 SS G_CDS: 3.76 Total: -46.64 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: -1.31 Total: -68.14 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.04 Total: -25.94 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -69.08 4.78 -64.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287085901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.252 kcal (2) G-P(sol) polarization free energy of solvation -69.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds