Wall clock time and date at job start Mon Mar 30 2020 01:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46942 * 2 1 4 4 C 1.53001 * 112.94304 * 309.66404 * 3 2 1 5 5 C 1.53945 * 113.84057 * 81.35258 * 3 2 1 6 6 N 1.47576 * 86.11584 * 90.75313 * 5 3 2 7 7 C 1.34778 * 134.49220 * 204.63975 * 6 5 3 8 8 O 1.21586 * 120.00390 * 174.61477 * 7 6 5 9 9 C 1.47646 * 119.99784 * 354.62027 * 7 6 5 10 10 C 1.40006 * 119.89561 * 352.75480 * 9 7 6 11 11 C 1.36317 * 120.10514 * 179.72057 * 10 9 7 12 12 C 1.40891 * 119.89409 * 0.52882 * 11 10 9 13 13 C 1.41099 * 120.10611 * 179.72014 * 12 11 10 14 14 H 1.08000 * 120.00243 * 205.44176 * 13 12 11 15 15 C 1.40234 * 120.00098 * 25.43899 * 13 12 11 16 16 N 1.30648 * 119.99832 * 16.75712 * 15 13 12 17 17 Si 1.86800 * 120.00190 * 196.74957 * 15 13 12 18 18 H 1.48500 * 109.46831 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46733 * 120.00209 * 17 15 13 20 20 H 1.48498 * 109.47167 * 240.00365 * 17 15 13 21 21 C 1.40887 * 119.78744 * 359.74111 * 12 11 10 22 22 C 1.36317 * 119.89508 * 0.02562 * 21 12 11 23 23 C 1.47580 * 91.02062 * 24.63888 * 6 5 3 24 24 H 1.09002 * 109.46906 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47415 * 299.99829 * 1 2 3 26 26 H 1.08997 * 109.47472 * 60.00236 * 1 2 3 27 27 H 1.08994 * 109.47440 * 240.00247 * 2 1 3 28 28 H 1.08997 * 109.47472 * 119.99764 * 2 1 3 29 29 H 1.08998 * 109.47217 * 288.41373 * 4 3 2 30 30 H 1.09002 * 109.46883 * 168.40628 * 4 3 2 31 31 H 1.09009 * 109.46664 * 48.41195 * 4 3 2 32 32 H 1.08998 * 113.76464 * 205.05430 * 5 3 2 33 33 H 1.08997 * 113.77079 * 336.44762 * 5 3 2 34 34 H 1.08003 * 119.94576 * 359.97438 * 10 9 7 35 35 H 1.08000 * 120.05431 * 180.29381 * 11 10 9 36 36 H 0.96998 * 119.99844 * 180.02562 * 16 15 13 37 37 H 1.08007 * 120.05367 * 179.97438 * 21 12 11 38 38 H 1.08004 * 119.94498 * 179.97438 * 22 21 12 39 39 H 1.08994 * 113.77059 * 221.06079 * 23 6 5 40 40 H 1.08996 * 113.76475 * 89.65673 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.3908 2.3046 -1.0846 5 6 2.0477 2.0998 1.3921 6 7 3.4265 1.5883 1.5153 7 6 4.2286 1.2750 2.5521 8 8 5.3163 0.7710 2.3488 9 6 3.7864 1.5437 3.9350 10 6 2.6051 2.2597 4.1632 11 6 2.1899 2.5053 5.4381 12 6 2.9574 2.0471 6.5271 13 6 2.5349 2.3039 7.8487 14 1 3.2585 2.3401 8.6496 15 6 1.1753 2.5123 8.1221 16 7 0.2712 2.1546 7.2495 17 14 0.6571 3.3012 9.7341 18 1 1.8629 3.6119 10.5433 19 1 -0.0876 4.5552 9.4546 20 1 -0.2160 2.3641 10.4857 21 6 4.1484 1.3320 6.2924 22 6 4.5531 1.0871 5.0139 23 6 3.5744 1.5575 0.0473 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.7685 2.0043 -2.0620 30 1 1.6320 3.3529 -0.9082 31 1 0.3094 2.1708 -1.0562 32 1 1.9835 3.1875 1.3647 33 1 1.3473 1.6487 2.0948 34 1 2.0197 2.6143 3.3277 35 1 1.2760 3.0535 5.6132 36 1 -0.6691 2.2991 7.4385 37 1 4.7403 0.9791 7.1240 38 1 5.4662 0.5394 4.8330 39 1 4.0928 0.6734 -0.3236 40 1 3.9586 2.4860 -0.3751 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291061824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:24 Heat of formation + Delta-G solvation = 6.801666 kcal Electronic energy + Delta-G solvation = -20815.588791 eV Core-core repulsion = 17788.721443 eV Total energy + Delta-G solvation = -3026.867348 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.37218 -38.00129 -36.75989 -33.85650 -33.43477 -30.55459 -29.52774 -29.41767 -27.00303 -26.16081 -25.31020 -23.54505 -21.44929 -20.92086 -18.93763 -18.37775 -17.45287 -16.36802 -15.77433 -15.60344 -15.19693 -14.69158 -14.32511 -13.98693 -13.53517 -13.30117 -13.02042 -12.79851 -12.52806 -12.30167 -12.12125 -11.97962 -11.93512 -11.73979 -11.44041 -11.29699 -11.24764 -10.93667 -10.81733 -10.67554 -10.56540 -10.22021 -9.97221 -9.49573 -9.29744 -8.86270 -8.21028 -7.69492 -7.50671 -7.01372 -4.59019 2.25131 2.91023 2.95466 3.01173 3.05330 3.38217 3.75036 3.86936 4.28030 4.55225 4.77954 4.87266 5.13229 5.30709 5.45526 5.53863 5.54613 5.58455 5.62824 5.71316 5.73231 5.85472 5.88504 5.91436 6.07024 6.12792 6.16281 6.26866 6.33603 6.43593 6.53365 6.80187 6.84588 7.06892 7.15978 7.46979 7.70132 7.84890 7.89219 8.08593 8.35281 8.42338 8.64991 8.77521 9.08266 9.90710 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.004705 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.375935 B = 5950.242508 C = 6808.842959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.097 4.097 3 C -0.100 4.100 4 C -0.139 4.139 5 C 0.111 3.889 6 N -0.646 5.646 7 C 0.593 3.407 8 O -0.575 6.575 9 C -0.278 4.278 10 C -0.074 4.074 11 C -0.179 4.179 12 C 0.128 3.872 13 C -0.444 4.444 14 H 0.084 0.916 15 C 0.075 3.925 16 N -0.775 5.775 17 Si 0.913 3.087 18 H -0.257 1.257 19 H -0.269 1.269 20 H -0.272 1.272 21 C -0.238 4.238 22 C -0.024 4.024 23 C 0.113 3.887 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.285 0.715 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.488 1.238 -11.008 11.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.135 4.135 3 C -0.101 4.101 4 C -0.197 4.197 5 C -0.012 4.012 6 N -0.382 5.382 7 C 0.392 3.608 8 O -0.458 6.458 9 C -0.282 4.282 10 C -0.092 4.092 11 C -0.198 4.198 12 C 0.125 3.875 13 C -0.472 4.472 14 H 0.102 0.898 15 C -0.146 4.146 16 N -0.398 5.398 17 Si 0.736 3.264 18 H -0.181 1.181 19 H -0.194 1.194 20 H -0.197 1.197 21 C -0.257 4.257 22 C -0.044 4.044 23 C -0.010 4.010 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.120 0.880 35 H 0.138 0.862 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.031 0.894 -10.959 11.711 hybrid contribution -0.343 0.384 0.761 0.919 sum -4.374 1.278 -10.197 11.169 Atomic orbital electron populations 1.21822 0.95526 1.01595 1.02026 1.21234 0.95896 0.93894 1.02452 1.22522 0.95236 0.96672 0.95681 1.21778 1.01135 0.99033 0.97728 1.23368 0.84300 0.98645 0.94868 1.49682 1.15847 1.67206 1.05420 1.18344 0.82267 0.76014 0.84219 1.90634 1.22473 1.46775 1.85876 1.18872 1.02009 1.17079 0.90253 1.20971 0.94271 0.96990 0.97017 1.20994 1.02333 1.05300 0.91187 1.17805 0.90106 0.86123 0.93471 1.19867 0.92704 1.40125 0.94501 0.89752 1.26085 0.96558 0.92889 0.99094 1.69749 1.02705 1.32087 1.35260 0.86177 0.79607 0.79486 0.81106 1.18088 1.19407 1.19676 1.20722 1.01721 1.08235 0.95030 1.20367 0.96483 0.95473 0.92045 1.23120 0.94937 1.01415 0.81484 0.92842 0.92338 0.92436 0.91787 0.91289 0.92308 0.92311 0.91609 0.90204 0.89409 0.88021 0.86234 0.90363 0.88394 0.88211 0.90739 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.36 37.16 0.35 -1.17 16 2 C -0.10 -1.13 5.40 -26.73 -0.14 -1.27 16 3 C -0.10 -1.17 1.04 -153.58 -0.16 -1.33 16 4 C -0.14 -1.22 8.92 37.16 0.33 -0.89 16 5 C 0.11 1.60 5.28 -2.98 -0.02 1.58 16 6 N -0.65 -11.65 3.45 -179.20 -0.62 -12.27 16 7 C 0.59 13.53 7.98 -12.42 -0.10 13.43 16 8 O -0.58 -14.65 17.08 5.29 0.09 -14.56 16 9 C -0.28 -6.65 5.89 -104.73 -0.62 -7.27 16 10 C -0.07 -1.69 9.00 -39.61 -0.36 -2.05 16 11 C -0.18 -4.46 8.63 -39.27 -0.34 -4.80 16 12 C 0.13 3.32 5.57 -106.81 -0.59 2.73 16 13 C -0.44 -11.19 9.05 -37.75 -0.34 -11.53 16 14 H 0.08 2.04 7.90 -52.49 -0.41 1.62 16 15 C 0.07 1.75 5.15 -17.31 -0.09 1.66 16 16 N -0.77 -18.64 10.94 55.56 0.61 -18.03 16 17 Si 0.91 17.38 29.59 -169.99 -5.03 12.35 16 18 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 19 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 20 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 21 C -0.24 -5.90 9.73 -39.27 -0.38 -6.28 16 22 C -0.02 -0.60 9.52 -39.61 -0.38 -0.98 16 23 C 0.11 1.59 7.98 -2.97 -0.02 1.56 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.62 8.07 -51.93 -0.42 0.21 16 26 H 0.06 0.48 6.35 -51.93 -0.33 0.15 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.99 8.00 -51.93 -0.42 0.57 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.50 7.94 -51.93 -0.41 0.08 16 31 H 0.07 0.53 6.03 -51.92 -0.31 0.22 16 32 H 0.08 1.04 7.86 -51.93 -0.41 0.63 16 33 H 0.09 1.35 6.77 -51.93 -0.35 1.00 16 34 H 0.10 2.01 4.06 -52.48 -0.21 1.80 16 35 H 0.12 3.00 6.17 -52.49 -0.32 2.68 16 36 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 37 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 38 H 0.10 2.37 7.65 -52.48 -0.40 1.96 16 39 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 40 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 324.65 15.07 4.89 4.89 Total: -1.00 -29.34 324.65 -8.59 -37.93 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.67 Total: 6.29 kcal Atomic # 6 Polarization: -13.74 SS G_CDS: -2.86 Total: -16.60 kcal Atomic # 7 Polarization: -30.29 SS G_CDS: -0.01 Total: -30.30 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.09 Total: -14.56 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.34 -8.59 -37.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291061824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.728 kcal (2) G-P(sol) polarization free energy of solvation -29.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds