Wall clock time and date at job start Mon Mar 30 2020 01:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46942 * 2 1 4 4 C 1.53001 * 112.94304 * 309.66404 * 3 2 1 5 5 C 1.53945 * 113.84057 * 81.35258 * 3 2 1 6 6 N 1.47576 * 86.11584 * 90.75313 * 5 3 2 7 7 C 1.34778 * 134.49220 * 204.63975 * 6 5 3 8 8 O 1.21586 * 120.00390 * 174.61477 * 7 6 5 9 9 C 1.47646 * 119.99784 * 354.62027 * 7 6 5 10 10 C 1.40006 * 119.89561 * 352.75480 * 9 7 6 11 11 C 1.36317 * 120.10514 * 179.72057 * 10 9 7 12 12 C 1.40891 * 119.89409 * 0.52882 * 11 10 9 13 13 C 1.41099 * 120.10611 * 179.72014 * 12 11 10 14 14 H 1.08000 * 120.00243 * 205.44176 * 13 12 11 15 15 C 1.40234 * 120.00098 * 25.43899 * 13 12 11 16 16 N 1.30648 * 119.99832 * 16.75712 * 15 13 12 17 17 Si 1.86800 * 120.00190 * 196.74957 * 15 13 12 18 18 H 1.48500 * 109.46831 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46733 * 120.00209 * 17 15 13 20 20 H 1.48498 * 109.47167 * 240.00365 * 17 15 13 21 21 C 1.40887 * 119.78744 * 359.74111 * 12 11 10 22 22 C 1.36317 * 119.89508 * 0.02562 * 21 12 11 23 23 C 1.47580 * 91.02062 * 24.63888 * 6 5 3 24 24 H 1.09002 * 109.46906 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47415 * 299.99829 * 1 2 3 26 26 H 1.08997 * 109.47472 * 60.00236 * 1 2 3 27 27 H 1.08994 * 109.47440 * 240.00247 * 2 1 3 28 28 H 1.08997 * 109.47472 * 119.99764 * 2 1 3 29 29 H 1.08998 * 109.47217 * 288.41373 * 4 3 2 30 30 H 1.09002 * 109.46883 * 168.40628 * 4 3 2 31 31 H 1.09009 * 109.46664 * 48.41195 * 4 3 2 32 32 H 1.08998 * 113.76464 * 205.05430 * 5 3 2 33 33 H 1.08997 * 113.77079 * 336.44762 * 5 3 2 34 34 H 1.08003 * 119.94576 * 359.97438 * 10 9 7 35 35 H 1.08000 * 120.05431 * 180.29381 * 11 10 9 36 36 H 0.96998 * 119.99844 * 180.02562 * 16 15 13 37 37 H 1.08007 * 120.05367 * 179.97438 * 21 12 11 38 38 H 1.08004 * 119.94498 * 179.97438 * 22 21 12 39 39 H 1.08994 * 113.77059 * 221.06079 * 23 6 5 40 40 H 1.08996 * 113.76475 * 89.65673 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.3908 2.3046 -1.0846 5 6 2.0477 2.0998 1.3921 6 7 3.4265 1.5883 1.5153 7 6 4.2286 1.2750 2.5521 8 8 5.3163 0.7710 2.3488 9 6 3.7864 1.5437 3.9350 10 6 2.6051 2.2597 4.1632 11 6 2.1899 2.5053 5.4381 12 6 2.9574 2.0471 6.5271 13 6 2.5349 2.3039 7.8487 14 1 3.2585 2.3401 8.6496 15 6 1.1753 2.5123 8.1221 16 7 0.2712 2.1546 7.2495 17 14 0.6571 3.3012 9.7341 18 1 1.8629 3.6119 10.5433 19 1 -0.0876 4.5552 9.4546 20 1 -0.2160 2.3641 10.4857 21 6 4.1484 1.3320 6.2924 22 6 4.5531 1.0871 5.0139 23 6 3.5744 1.5575 0.0473 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.7685 2.0043 -2.0620 30 1 1.6320 3.3529 -0.9082 31 1 0.3094 2.1708 -1.0562 32 1 1.9835 3.1875 1.3647 33 1 1.3473 1.6487 2.0948 34 1 2.0197 2.6143 3.3277 35 1 1.2760 3.0535 5.6132 36 1 -0.6691 2.2991 7.4385 37 1 4.7403 0.9791 7.1240 38 1 5.4662 0.5394 4.8330 39 1 4.0928 0.6734 -0.3236 40 1 3.9586 2.4860 -0.3751 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291061824.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:24 Heat of formation + Delta-G solvation = -8.698675 kcal Electronic energy + Delta-G solvation = -20816.260936 eV Core-core repulsion = 17788.721443 eV Total energy + Delta-G solvation = -3027.539493 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.69195 -39.69630 -38.55529 -35.68734 -34.58740 -32.26454 -31.36153 -30.61606 -28.40113 -27.38898 -26.84665 -24.60134 -23.17403 -22.79168 -20.51811 -19.59453 -19.16985 -17.98171 -17.45683 -16.85738 -16.78017 -15.89195 -15.56561 -15.49502 -15.09160 -14.93066 -14.56859 -14.28759 -13.92884 -13.68053 -13.57020 -13.35976 -13.14842 -12.88961 -12.80108 -12.69783 -12.63290 -12.42120 -12.36001 -11.78438 -11.74027 -11.57344 -11.45460 -11.17782 -11.02767 -10.55484 -9.72954 -9.60220 -9.37164 -8.79948 -6.50644 0.41161 1.11329 1.38048 1.41472 1.55058 1.98187 2.09663 2.17183 2.75404 3.23670 3.64609 3.70633 3.84826 4.09491 4.18781 4.34449 4.40039 4.46422 4.49676 4.55639 4.64198 4.69288 4.73949 4.87955 4.93092 5.00192 5.06349 5.07527 5.13953 5.18624 5.25340 5.26872 5.29810 5.41776 5.57413 5.61335 5.81786 5.94941 5.98747 6.19444 6.51893 6.74773 6.77501 6.86930 7.35723 8.15716 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.021984 B = 0.004705 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.375935 B = 5950.242508 C = 6808.842959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C -0.077 4.077 4 C -0.133 4.133 5 C 0.101 3.899 6 N -0.650 5.650 7 C 0.586 3.414 8 O -0.614 6.614 9 C -0.293 4.293 10 C -0.065 4.065 11 C -0.197 4.197 12 C 0.101 3.899 13 C -0.473 4.473 14 H 0.085 0.915 15 C 0.038 3.962 16 N -0.799 5.799 17 Si 0.989 3.011 18 H -0.258 1.258 19 H -0.259 1.259 20 H -0.263 1.263 21 C -0.252 4.252 22 C -0.037 4.037 23 C 0.107 3.893 24 H 0.055 0.945 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.297 0.703 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.069 0.931 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.460 2.469 -12.334 14.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.137 4.137 3 C -0.078 4.078 4 C -0.191 4.191 5 C -0.021 4.021 6 N -0.384 5.384 7 C 0.383 3.617 8 O -0.500 6.500 9 C -0.297 4.297 10 C -0.083 4.083 11 C -0.216 4.216 12 C 0.098 3.902 13 C -0.501 4.501 14 H 0.103 0.897 15 C -0.181 4.181 16 N -0.423 5.423 17 Si 0.809 3.191 18 H -0.181 1.181 19 H -0.183 1.183 20 H -0.187 1.187 21 C -0.271 4.271 22 C -0.056 4.056 23 C -0.015 4.015 24 H 0.074 0.926 25 H 0.067 0.933 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.051 0.949 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.094 0.906 34 H 0.150 0.850 35 H 0.134 0.866 36 H 0.109 0.891 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.041 2.132 -12.338 13.902 hybrid contribution 0.242 -0.047 1.076 1.104 sum -5.799 2.085 -11.262 12.838 Atomic orbital electron populations 1.21805 0.94000 1.02097 1.02672 1.21255 0.97218 0.93718 1.01468 1.22387 0.93530 0.96956 0.94896 1.21772 1.01632 0.98691 0.96963 1.23700 0.81830 1.00067 0.96513 1.49801 1.16649 1.65501 1.06414 1.18194 0.82301 0.76340 0.84903 1.90591 1.24157 1.48733 1.86538 1.19195 1.02250 1.17002 0.91253 1.21220 0.93883 0.95858 0.97371 1.21035 1.02503 1.06232 0.91818 1.18158 0.90757 0.86817 0.94482 1.20136 0.94038 1.41544 0.94346 0.89720 1.26935 0.95747 0.92603 1.02777 1.69762 1.03588 1.31840 1.37080 0.85049 0.79109 0.78693 0.76300 1.18139 1.18283 1.18744 1.20863 1.02040 1.08760 0.95460 1.20507 0.96809 0.95826 0.92458 1.23501 0.96996 1.02413 0.78581 0.92568 0.93334 0.90041 0.90248 0.94867 0.90592 0.91417 0.90307 0.87987 0.90570 0.84989 0.86643 0.89125 0.87716 0.88274 0.91255 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.36 71.98 0.67 -1.94 16 2 C -0.10 -2.13 5.40 30.60 0.17 -1.96 16 3 C -0.08 -1.59 1.04 -51.52 -0.05 -1.65 16 4 C -0.13 -1.75 8.92 71.98 0.64 -1.11 16 5 C 0.10 2.72 5.28 86.48 0.46 3.18 16 6 N -0.65 -23.09 3.45 -839.13 -2.90 -25.99 16 7 C 0.59 27.23 7.98 86.73 0.69 27.93 16 8 O -0.61 -32.23 17.08 -3.99 -0.07 -32.30 16 9 C -0.29 -14.40 5.89 -19.93 -0.12 -14.52 16 10 C -0.06 -3.01 9.00 22.25 0.20 -2.81 16 11 C -0.20 -10.01 8.63 22.47 0.19 -9.81 16 12 C 0.10 5.40 5.57 -21.28 -0.12 5.29 16 13 C -0.47 -24.34 9.05 23.46 0.21 -24.13 16 14 H 0.08 4.19 7.90 -2.91 -0.02 4.17 16 15 C 0.04 1.79 5.15 85.35 0.44 2.23 16 16 N -0.80 -38.35 10.94 21.87 0.24 -38.12 16 17 Si 0.99 34.91 29.59 68.60 2.03 36.94 16 18 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 19 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 20 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 21 C -0.25 -13.03 9.73 22.47 0.22 -12.81 16 22 C -0.04 -1.88 9.52 22.25 0.21 -1.67 16 23 C 0.11 2.79 7.98 86.48 0.69 3.48 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.05 0.95 8.07 -2.38 -0.02 0.93 16 26 H 0.08 1.05 6.35 -2.39 -0.02 1.04 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.03 0.94 8.00 -2.39 -0.02 0.93 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.82 7.94 -2.39 -0.02 0.80 16 31 H 0.08 0.89 6.03 -2.38 -0.01 0.87 16 32 H 0.10 2.35 7.86 -2.39 -0.02 2.33 16 33 H 0.08 2.26 6.77 -2.39 -0.02 2.25 16 34 H 0.13 5.15 4.06 -2.91 -0.01 5.13 16 35 H 0.12 5.89 6.17 -2.91 -0.02 5.87 16 36 H 0.30 12.56 8.29 -92.71 -0.77 11.79 16 37 H 0.10 5.08 8.06 -2.91 -0.02 5.05 16 38 H 0.10 4.96 7.65 -2.91 -0.02 4.93 16 39 H 0.07 1.90 8.10 -2.39 -0.02 1.88 16 40 H 0.10 2.18 8.10 -2.39 -0.02 2.16 16 Total: -1.00 -65.76 324.65 4.85 -60.91 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 1.03 Total: 28.86 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 4.51 Total: -30.31 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: -2.66 Total: -64.11 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.07 Total: -32.30 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 2.03 Total: 36.94 kcal Total: -65.76 4.85 -60.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291061824.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.214 kcal (2) G-P(sol) polarization free energy of solvation -65.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds