Wall clock time and date at job start Mon Mar 30 2020 02:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50704 * 119.99957 * 2 1 4 4 N 1.46496 * 109.47243 * 125.00284 * 3 2 1 5 5 C 1.46497 * 120.00245 * 89.99617 * 4 3 2 6 6 C 1.50707 * 109.47012 * 90.00110 * 5 4 3 7 7 C 1.38238 * 119.99792 * 90.00154 * 6 5 4 8 8 C 1.38235 * 119.99712 * 179.97438 * 7 6 5 9 9 C 1.38234 * 120.00220 * 359.97124 * 8 7 6 10 10 C 1.38233 * 120.00037 * 0.28719 * 9 8 7 11 11 C 1.38234 * 120.00179 * 269.98090 * 6 5 4 12 12 C 1.34777 * 119.99734 * 270.00249 * 4 3 2 13 13 O 1.21286 * 119.99898 * 179.97438 * 12 4 3 14 14 C 1.50698 * 120.00172 * 359.97438 * 12 4 3 15 15 C 1.53001 * 109.47009 * 180.02562 * 14 12 4 16 16 C 1.50707 * 109.46632 * 179.97438 * 15 14 12 17 17 H 1.08000 * 120.00346 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99601 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99855 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99743 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47266 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.46941 * 120.00352 * 20 18 16 23 23 H 1.48503 * 109.47130 * 239.99842 * 20 18 16 24 24 H 1.08001 * 119.99589 * 179.97438 * 1 2 3 25 25 H 1.08001 * 120.00016 * 359.97438 * 1 2 3 26 26 H 1.07998 * 120.00488 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47103 * 4.99741 * 3 2 1 28 28 H 1.09004 * 109.46933 * 245.00280 * 3 2 1 29 29 H 1.09005 * 109.47643 * 330.00571 * 5 4 3 30 30 H 1.09000 * 109.47513 * 209.99735 * 5 4 3 31 31 H 1.08005 * 120.00068 * 359.97438 * 7 6 5 32 32 H 1.07999 * 119.99770 * 179.97438 * 8 7 6 33 33 H 1.08002 * 119.99744 * 180.02562 * 9 8 7 34 34 H 1.07998 * 120.00395 * 179.72811 * 10 9 8 35 35 H 1.07999 * 119.99968 * 359.97438 * 11 6 5 36 36 H 1.08999 * 109.46882 * 300.00506 * 14 12 4 37 37 H 1.09003 * 109.47271 * 60.00180 * 14 12 4 38 38 H 1.08995 * 109.47014 * 299.99668 * 15 14 12 39 39 H 1.08998 * 109.46970 * 60.00513 * 15 14 12 40 40 H 0.96999 * 119.99622 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1313 5 6 4.3589 0.8257 0.9694 6 6 5.2616 1.9480 0.5258 7 6 5.9093 2.7269 1.4665 8 6 6.7376 3.7560 1.0596 9 6 6.9188 4.0060 -0.2879 10 6 6.2669 3.2305 -1.2284 11 6 5.4422 2.1984 -0.8216 12 6 2.5936 1.8223 2.3213 13 8 3.3637 1.8440 3.2581 14 6 1.1895 2.3435 2.4878 15 6 0.9961 2.8384 3.9226 16 6 -0.4080 3.3602 4.0889 17 1 -1.0938 3.3403 3.2549 18 6 -0.8173 3.8619 5.3062 19 7 0.0178 3.8855 6.3220 20 14 -2.5578 4.5080 5.5126 21 1 -3.2924 4.3699 4.2295 22 1 -3.2536 3.7277 6.5673 23 1 -2.5111 5.9393 5.9054 24 1 -0.5399 -0.9354 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3585 2.1316 0.0895 28 1 2.6212 1.4026 -0.9314 29 1 4.3667 0.0351 0.2189 30 1 4.7141 0.4279 1.9200 31 1 5.7681 2.5313 2.5192 32 1 7.2434 4.3648 1.7945 33 1 7.5663 4.8098 -0.6057 34 1 6.4050 3.4285 -2.2811 35 1 4.9367 1.5894 -1.5565 36 1 1.0232 3.1675 1.7940 37 1 0.4781 1.5442 2.2798 38 1 1.1625 2.0146 4.6166 39 1 1.7073 3.6378 4.1302 40 1 -0.2701 4.2388 7.1783 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291712245.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:40 Heat of formation + Delta-G solvation = -19.135450 kcal Electronic energy + Delta-G solvation = -20529.591475 eV Core-core repulsion = 17501.599409 eV Total energy + Delta-G solvation = -3027.992065 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.19868 -39.79085 -37.27627 -35.65276 -34.43841 -33.08265 -32.11831 -31.77190 -28.39856 -27.52533 -26.26120 -23.57184 -23.43374 -22.13122 -21.11451 -19.77769 -18.83860 -17.79642 -17.60181 -17.13318 -16.66754 -16.41953 -15.96440 -15.85454 -15.53619 -14.90047 -14.54284 -14.29124 -14.19201 -14.11239 -13.80408 -13.51164 -13.28422 -13.07267 -12.85354 -12.63577 -12.42283 -12.31386 -12.03602 -11.94277 -11.84812 -11.57057 -11.29328 -10.81389 -10.58721 -10.25870 -9.81392 -9.78085 -9.60565 -8.18455 -6.32618 0.36422 0.50630 1.33724 1.41467 1.43043 1.56345 1.70836 2.23922 2.43456 2.96499 3.14613 3.75580 3.85493 4.00586 4.04621 4.16591 4.20414 4.29441 4.32652 4.46646 4.49117 4.50619 4.59092 4.71760 4.78061 4.85250 5.02701 5.10622 5.14131 5.16877 5.46838 5.56151 5.58535 5.61165 5.62395 5.71016 5.77452 5.83939 5.85780 6.12785 6.16976 6.40777 6.85494 7.27984 7.37782 8.94596 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017853 B = 0.004581 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.974946 B = 6110.952484 C = 7079.419927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.184 4.184 3 C 0.132 3.868 4 N -0.601 5.601 5 C 0.153 3.847 6 C -0.115 4.115 7 C -0.125 4.125 8 C -0.139 4.139 9 C -0.122 4.122 10 C -0.124 4.124 11 C -0.105 4.105 12 C 0.510 3.490 13 O -0.581 6.581 14 C -0.114 4.114 15 C 0.046 3.954 16 C -0.540 4.540 17 H 0.075 0.925 18 C -0.006 4.006 19 N -0.938 5.938 20 Si 0.974 3.026 21 H -0.251 1.251 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.109 0.891 25 H 0.101 0.899 26 H 0.118 0.882 27 H 0.084 0.916 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.124 0.876 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.095 0.905 37 H 0.099 0.901 38 H -0.020 1.020 39 H -0.021 1.021 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.299 -5.640 -21.543 23.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.203 4.203 3 C 0.011 3.989 4 N -0.333 5.333 5 C 0.031 3.969 6 C -0.116 4.116 7 C -0.144 4.144 8 C -0.157 4.157 9 C -0.140 4.140 10 C -0.142 4.142 11 C -0.123 4.123 12 C 0.301 3.699 13 O -0.461 6.461 14 C -0.154 4.154 15 C 0.008 3.992 16 C -0.578 4.578 17 H 0.093 0.907 18 C -0.203 4.203 19 N -0.578 5.578 20 Si 0.797 3.203 21 H -0.175 1.175 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.128 0.872 25 H 0.119 0.881 26 H 0.136 0.864 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.139 0.861 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.142 0.858 33 H 0.162 0.838 34 H 0.171 0.829 35 H 0.169 0.831 36 H 0.114 0.886 37 H 0.117 0.883 38 H -0.001 1.001 39 H -0.003 1.003 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.721 -5.597 -20.891 23.320 hybrid contribution -0.497 0.407 1.237 1.394 sum 8.224 -5.190 -19.654 21.928 Atomic orbital electron populations 1.24105 0.95974 1.02925 0.98222 1.23300 0.96400 0.98740 1.01863 1.20947 0.92336 0.96413 0.89226 1.48097 1.12382 1.62103 1.10710 1.20421 0.80015 0.94006 1.02443 1.20337 0.98244 0.98606 0.94397 1.21246 0.97444 0.96531 0.99177 1.21363 0.99162 0.97743 0.97437 1.21488 0.99972 1.00165 0.92408 1.21528 0.96651 0.95202 1.00827 1.21346 0.98421 0.98284 0.94292 1.21346 0.90321 0.76272 0.81990 1.90626 1.56935 1.57045 1.41486 1.21631 0.92121 1.01731 0.99883 1.18665 0.95437 0.94054 0.91049 1.21710 0.98065 1.40712 0.97315 0.90671 1.26136 1.02516 0.96112 0.95584 1.70192 1.37735 1.47273 1.02624 0.85278 0.78499 0.77646 0.78860 1.17482 1.20564 1.20628 0.87235 0.88114 0.86376 0.89734 0.86775 0.86131 0.91855 0.88782 0.85834 0.83830 0.82931 0.83073 0.88640 0.88314 1.00113 1.00290 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.30 13.86 67.79 0.94 -2.36 16 2 C -0.18 -3.48 9.74 25.65 0.25 -3.23 16 3 C 0.13 2.70 5.65 85.64 0.48 3.18 16 4 N -0.60 -17.36 2.44 -830.49 -2.03 -19.38 16 5 C 0.15 3.88 5.53 85.64 0.47 4.36 16 6 C -0.11 -2.94 5.46 -19.86 -0.11 -3.05 16 7 C -0.13 -3.86 9.70 22.27 0.22 -3.65 16 8 C -0.14 -3.62 10.05 22.27 0.22 -3.39 16 9 C -0.12 -2.47 10.05 22.27 0.22 -2.24 16 10 C -0.12 -2.16 10.05 22.27 0.22 -1.94 16 11 C -0.11 -1.98 9.70 22.27 0.22 -1.76 16 12 C 0.51 20.89 7.67 87.66 0.67 21.56 16 13 O -0.58 -29.38 15.09 -3.05 -0.05 -29.43 16 14 C -0.11 -4.85 4.19 29.85 0.13 -4.72 16 15 C 0.05 2.62 4.26 29.85 0.13 2.75 16 16 C -0.54 -31.33 9.11 25.60 0.23 -31.09 16 17 H 0.08 3.97 7.74 -2.91 -0.02 3.95 16 18 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 19 N -0.94 -60.44 13.29 21.45 0.28 -60.16 16 20 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 21 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 24 H 0.11 1.81 8.06 -2.91 -0.02 1.78 16 25 H 0.10 1.93 7.84 -2.91 -0.02 1.91 16 26 H 0.12 2.00 8.06 -2.91 -0.02 1.98 16 27 H 0.08 1.81 6.09 -2.39 -0.01 1.80 16 28 H 0.11 1.60 8.07 -2.38 -0.02 1.58 16 29 H 0.12 2.03 8.02 -2.38 -0.02 2.02 16 30 H 0.06 1.96 7.36 -2.39 -0.02 1.94 16 31 H 0.09 3.49 7.58 -2.91 -0.02 3.47 16 32 H 0.12 2.95 8.06 -2.91 -0.02 2.92 16 33 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.10 3.66 7.40 -2.39 -0.02 3.64 16 37 H 0.10 3.79 7.54 -2.39 -0.02 3.78 16 38 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 39 H -0.02 -1.39 8.10 -2.39 -0.02 -1.41 16 40 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -78.89 342.66 6.00 -72.89 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 1.00 Total: 14.78 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 4.76 Total: -25.49 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -1.74 Total: -79.54 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.05 Total: -29.43 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -78.89 6.00 -72.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291712245.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.758 kcal (2) G-P(sol) polarization free energy of solvation -78.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds