Wall clock time and date at job start Mon Mar 30 2020 02:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50697 * 119.99391 * 2 1 4 4 N 1.46895 * 109.46921 * 125.00682 * 3 2 1 5 5 C 1.46902 * 110.99846 * 291.60112 * 4 3 2 6 6 C 1.50699 * 109.47281 * 297.71773 * 5 4 3 7 7 H 1.07995 * 120.00182 * 356.23337 * 6 5 4 8 8 C 1.37876 * 119.99797 * 176.23985 * 6 5 4 9 9 N 1.31512 * 120.00376 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99826 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46778 * 59.99401 * 10 8 6 12 12 H 1.48495 * 109.47105 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47054 * 299.99834 * 10 8 6 14 14 C 1.46906 * 111.00390 * 167.65167 * 4 3 2 15 15 H 1.09001 * 110.88340 * 68.82041 * 14 4 3 16 16 C 1.54350 * 110.81819 * 305.31080 * 14 4 3 17 17 C 1.51368 * 105.16776 * 215.42229 * 16 14 4 18 18 C 1.38494 * 130.39256 * 197.18659 * 17 16 14 19 19 C 1.38102 * 120.21759 * 180.02562 * 18 17 16 20 20 C 1.38253 * 119.93315 * 0.02562 * 19 18 17 21 21 C 1.38104 * 119.93708 * 359.97438 * 20 19 18 22 22 C 1.38217 * 109.75690 * 17.19049 * 17 16 14 23 23 C 1.51362 * 109.76085 * 359.97438 * 22 17 16 24 24 H 1.09005 * 110.30315 * 223.88424 * 23 22 17 25 25 O 1.42902 * 110.30604 * 101.73507 * 23 22 17 26 26 H 1.07992 * 120.00278 * 359.97438 * 1 2 3 27 27 H 1.08007 * 119.99359 * 180.02562 * 1 2 3 28 28 H 1.07991 * 119.99974 * 180.02562 * 2 1 3 29 29 H 1.08993 * 109.47678 * 4.99976 * 3 2 1 30 30 H 1.09004 * 109.47046 * 245.00279 * 3 2 1 31 31 H 1.08999 * 109.46741 * 57.71829 * 5 4 3 32 32 H 1.08998 * 109.47334 * 177.71087 * 5 4 3 33 33 H 0.96997 * 120.00255 * 180.02562 * 9 8 6 34 34 H 1.08991 * 110.30322 * 334.34827 * 16 14 4 35 35 H 1.08996 * 110.30120 * 96.40615 * 16 14 4 36 36 H 1.08000 * 119.89290 * 359.97438 * 18 17 16 37 37 H 1.07998 * 120.03721 * 179.97438 * 19 18 17 38 38 H 1.08005 * 120.03696 * 179.97438 * 20 19 18 39 39 H 1.07997 * 119.89178 * 179.97438 * 21 20 19 40 40 H 0.96704 * 114.00057 * 64.25208 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9963 1.3320 1.1344 5 6 2.2716 1.4032 2.4103 6 6 1.4782 2.6832 2.4666 7 1 1.5564 3.4028 1.6651 8 6 0.6526 2.9357 3.5416 9 7 0.5570 2.0593 4.5175 10 14 -0.3304 4.5227 3.6118 11 1 -1.2370 4.5957 2.4380 12 1 -1.1340 4.5523 4.8602 13 1 0.5983 5.6813 3.5928 14 6 3.9483 2.4436 1.0070 15 1 3.4454 3.4023 1.1335 16 6 4.6829 2.3840 -0.3491 17 6 6.0867 2.8714 -0.0609 18 6 7.0735 3.3246 -0.9205 19 6 8.2985 3.7239 -0.4234 20 6 8.5417 3.6709 0.9366 21 6 7.5589 3.2193 1.7953 22 6 6.3294 2.8194 1.2988 23 6 5.1052 2.2941 2.0174 24 1 4.9072 2.8871 2.9103 25 8 5.2853 0.9194 2.3638 26 1 -0.5400 0.9352 0.0004 27 1 -0.5399 -0.9354 0.0004 28 1 1.8500 -0.9352 -0.0004 29 1 1.3585 2.1316 0.0896 30 1 2.6212 1.4027 -0.9314 31 1 1.5951 0.5525 2.4918 32 1 2.9843 1.3808 3.2347 33 1 -0.0241 2.2368 5.2736 34 1 4.7071 1.3599 -0.7215 35 1 4.1951 3.0374 -1.0724 36 1 6.8848 3.3651 -1.9831 37 1 9.0662 4.0763 -1.0963 38 1 9.4993 3.9824 1.3271 39 1 7.7497 3.1779 2.8575 40 1 5.9998 0.7636 2.9966 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292097572.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:45 Heat of formation + Delta-G solvation = -8.046875 kcal Electronic energy + Delta-G solvation = -21339.332999 eV Core-core repulsion = 18311.821770 eV Total energy + Delta-G solvation = -3027.511229 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.37349 -38.89431 -37.17187 -35.07261 -34.79424 -33.24694 -31.96720 -29.60136 -28.52352 -27.53452 -25.96122 -24.08173 -22.58802 -21.84437 -20.89391 -20.51655 -18.58495 -18.29284 -17.34424 -16.97296 -16.36826 -16.19475 -15.88205 -15.73911 -15.02696 -14.86868 -14.47502 -14.33455 -14.10290 -14.00060 -13.80339 -13.18820 -13.03619 -12.89650 -12.71685 -12.50187 -12.37518 -12.19267 -12.11841 -11.76843 -11.73431 -11.54895 -11.43358 -10.81386 -10.56323 -10.09287 -9.74673 -9.49748 -8.92869 -8.10506 -6.30378 0.41384 0.49320 1.35108 1.35868 1.43790 1.52507 2.37115 2.83307 3.12102 3.27831 3.37062 3.72205 3.74810 4.01582 4.17730 4.22835 4.25353 4.34977 4.40363 4.49513 4.65029 4.72122 4.73548 4.83251 4.88989 4.98552 5.04752 5.12664 5.15848 5.29098 5.37316 5.41282 5.53936 5.60688 5.76645 5.81413 5.83628 5.96467 6.12013 6.13398 6.36495 6.57759 6.91643 7.00300 7.39990 8.90357 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.017930 B = 0.005906 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.239226 B = 4740.130345 C = 5440.290858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.139 4.139 3 C 0.079 3.921 4 N -0.509 5.509 5 C 0.215 3.785 6 C -0.552 4.552 7 H 0.053 0.947 8 C 0.016 3.984 9 N -0.924 5.924 10 Si 0.948 3.052 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.271 1.271 14 C 0.093 3.907 15 H 0.044 0.956 16 C -0.069 4.069 17 C -0.091 4.091 18 C -0.119 4.119 19 C -0.113 4.113 20 C -0.127 4.127 21 C -0.108 4.108 22 C -0.150 4.150 23 C 0.160 3.840 24 H 0.037 0.963 25 O -0.542 6.542 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.025 0.975 30 H 0.087 0.913 31 H 0.004 0.996 32 H 0.004 0.996 33 H 0.263 0.737 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.140 0.860 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.130 0.870 40 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.650 2.477 -10.173 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.157 4.157 3 C -0.048 4.048 4 N -0.232 5.232 5 C 0.088 3.912 6 C -0.591 4.591 7 H 0.071 0.929 8 C -0.184 4.184 9 N -0.563 5.563 10 Si 0.773 3.227 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.197 1.197 14 C -0.016 4.016 15 H 0.062 0.938 16 C -0.107 4.107 17 C -0.091 4.091 18 C -0.136 4.136 19 C -0.130 4.130 20 C -0.144 4.144 21 C -0.126 4.126 22 C -0.151 4.151 23 C 0.101 3.899 24 H 0.055 0.945 25 O -0.346 6.346 26 H 0.101 0.899 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.043 0.957 30 H 0.105 0.895 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.158 0.842 37 H 0.173 0.827 38 H 0.170 0.830 39 H 0.148 0.852 40 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 13.330 1.920 -10.423 17.030 hybrid contribution -0.999 1.477 1.182 2.139 sum 12.331 3.397 -9.241 15.779 Atomic orbital electron populations 1.23823 0.96001 1.01633 1.01654 1.22825 0.95730 0.98307 0.98847 1.21206 0.94458 0.94895 0.94268 1.62426 1.16815 1.41143 1.02774 1.19231 0.91160 0.94096 0.86686 1.21933 1.26229 1.05516 1.05443 0.92905 1.25719 0.97738 0.99592 0.95322 1.70065 1.39431 1.36818 1.10031 0.85763 0.78949 0.80325 0.77614 1.19514 1.20757 1.19658 1.22152 0.91678 0.93350 0.94461 0.93793 1.21101 0.91163 1.01955 0.96440 1.20674 0.96026 0.98235 0.94190 1.20923 0.92934 0.99630 1.00159 1.21450 0.96810 0.98769 0.95997 1.21384 0.99578 0.99847 0.93630 1.20902 0.92001 0.98779 1.00875 1.21292 0.96246 1.01459 0.96055 1.20918 0.91007 0.82809 0.95199 0.94514 1.86761 1.57914 1.23751 1.66209 0.89925 0.87128 0.87100 0.95655 0.89456 0.97833 0.97795 0.92790 0.89352 0.89817 0.84201 0.82727 0.83043 0.85202 0.77657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.98 14.32 67.78 0.97 -6.01 16 2 C -0.14 -5.24 8.71 25.64 0.22 -5.02 16 3 C 0.08 3.15 5.04 85.56 0.43 3.58 16 4 N -0.51 -22.56 3.88 -874.76 -3.40 -25.96 16 5 C 0.21 11.60 4.67 85.56 0.40 12.00 16 6 C -0.55 -30.88 7.41 25.60 0.19 -30.69 16 7 H 0.05 2.91 5.94 -2.91 -0.02 2.89 16 8 C 0.02 0.90 5.46 84.65 0.46 1.36 16 9 N -0.92 -55.79 13.29 21.45 0.28 -55.51 16 10 Si 0.95 44.37 29.54 68.60 2.03 46.40 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 14 C 0.09 3.72 2.43 45.82 0.11 3.83 16 15 H 0.04 1.97 6.48 -2.39 -0.02 1.95 16 16 C -0.07 -2.21 4.91 30.52 0.15 -2.06 16 17 C -0.09 -2.67 6.14 -19.60 -0.12 -2.79 16 18 C -0.12 -2.72 10.04 22.30 0.22 -2.50 16 19 C -0.11 -2.15 10.05 22.24 0.22 -1.92 16 20 C -0.13 -2.52 10.05 22.24 0.22 -2.30 16 21 C -0.11 -2.70 10.04 22.30 0.22 -2.47 16 22 C -0.15 -4.67 5.81 -19.60 -0.11 -4.78 16 23 C 0.16 6.06 3.33 30.51 0.10 6.16 16 24 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 25 O -0.54 -20.68 11.93 -148.98 -1.78 -22.46 16 26 H 0.08 3.14 7.84 -2.91 -0.02 3.12 16 27 H 0.11 3.42 8.06 -2.91 -0.02 3.40 16 28 H 0.11 3.97 8.06 -2.92 -0.02 3.94 16 29 H 0.03 1.12 6.12 -2.39 -0.01 1.10 16 30 H 0.09 2.95 6.32 -2.38 -0.02 2.93 16 31 H 0.00 0.21 7.30 -2.39 -0.02 0.19 16 32 H 0.00 0.23 6.92 -2.39 -0.02 0.22 16 33 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.09 2.85 7.62 -2.39 -0.02 2.83 16 35 H 0.08 2.36 8.12 -2.39 -0.02 2.34 16 36 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 38 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 40 H 0.38 10.88 9.12 -74.05 -0.68 10.21 16 Total: -1.00 -67.66 324.95 1.20 -66.46 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.36 Total: 24.66 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 3.70 Total: -33.60 kcal Atomic # 7 Polarization: -78.35 SS G_CDS: -3.11 Total: -81.46 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -1.78 Total: -22.46 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -67.66 1.20 -66.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292097572.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.414 kcal (2) G-P(sol) polarization free energy of solvation -67.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds