Wall clock time and date at job start Mon Mar 30 2020 02:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00240 * 2 1 4 4 N 1.46894 * 109.47247 * 124.99583 * 3 2 1 5 5 C 1.46904 * 111.00178 * 294.08297 * 4 3 2 6 6 C 1.50701 * 109.47142 * 160.63647 * 5 4 3 7 7 H 1.07999 * 120.00091 * 4.71129 * 6 5 4 8 8 C 1.37881 * 119.99829 * 184.71159 * 6 5 4 9 9 N 1.31513 * 119.99924 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99849 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46757 * 90.00251 * 10 8 6 12 12 H 1.48502 * 109.47334 * 209.99755 * 10 8 6 13 13 H 1.48495 * 109.47505 * 330.00279 * 10 8 6 14 14 C 1.46905 * 110.99813 * 170.12738 * 4 3 2 15 15 H 1.09003 * 110.72640 * 175.54756 * 14 4 3 16 16 C 1.54500 * 111.02045 * 51.95173 * 14 4 3 17 17 C 1.51368 * 105.08898 * 268.37672 * 16 14 4 18 18 C 1.38500 * 130.39164 * 162.74726 * 17 16 14 19 19 C 1.38104 * 120.21624 * 179.68542 * 18 17 16 20 20 C 1.38262 * 119.93376 * 359.97438 * 19 18 17 21 21 C 1.38097 * 119.93108 * 0.02562 * 20 19 18 22 22 C 1.38215 * 109.76040 * 342.46518 * 17 16 14 23 23 C 1.51374 * 109.75813 * 0.23814 * 22 17 16 24 24 H 1.09002 * 110.30199 * 136.09823 * 23 22 17 25 25 O 1.42892 * 110.30639 * 258.25310 * 23 22 17 26 26 H 1.08005 * 119.99471 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00434 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.99961 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46906 * 4.99215 * 3 2 1 30 30 H 1.09001 * 109.46939 * 244.99436 * 3 2 1 31 31 H 1.08999 * 109.46553 * 280.63401 * 5 4 3 32 32 H 1.08997 * 109.47018 * 40.63211 * 5 4 3 33 33 H 0.96996 * 120.00262 * 180.02562 * 9 8 6 34 34 H 1.09007 * 110.40968 * 149.44523 * 16 14 4 35 35 H 1.08995 * 110.27552 * 27.24011 * 16 14 4 36 36 H 1.08001 * 119.89161 * 359.70785 * 18 17 16 37 37 H 1.08000 * 120.03607 * 179.97438 * 19 18 17 38 38 H 1.07995 * 120.02686 * 179.97438 * 20 19 18 39 39 H 1.08010 * 119.88960 * 179.97438 * 21 20 19 40 40 H 0.96706 * 113.99734 * 298.54602 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2711 1.3441 2.4121 6 6 3.1937 0.8993 3.5175 7 1 4.2355 0.7074 3.3071 8 6 2.7078 0.7374 4.7977 9 7 1.4393 0.9716 5.0540 10 14 3.8511 0.1853 6.1678 11 1 4.4583 1.3758 6.8155 12 1 3.0801 -0.5868 7.1750 13 1 4.9239 -0.6717 5.6022 14 6 3.9106 2.4777 1.0372 15 1 4.5480 2.5386 1.9194 16 6 3.1292 3.7945 0.8312 17 6 3.0400 3.9690 -0.6698 18 6 2.2066 4.7704 -1.4322 19 6 2.3114 4.7706 -2.8093 20 6 3.2515 3.9688 -3.4297 21 6 4.0834 3.1690 -2.6711 22 6 3.9793 3.1669 -1.2901 23 6 4.7601 2.3941 -0.2487 24 1 4.8773 1.3554 -0.5577 25 8 6.0383 2.9973 -0.0386 26 1 -0.5399 0.9354 -0.0004 27 1 -0.5401 -0.9352 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 0.0894 30 1 2.6214 1.4025 -0.9314 31 1 1.9166 2.3539 2.6189 32 1 1.4205 0.6652 2.3534 33 1 1.0975 0.8580 5.9546 34 1 3.6680 4.6302 1.2777 35 1 2.1315 3.7131 1.2624 36 1 1.4725 5.3976 -0.9482 37 1 1.6597 5.3963 -3.4010 38 1 3.3346 3.9674 -4.5064 39 1 4.8173 2.5426 -3.1565 40 1 6.6001 3.0125 -0.8256 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292097580.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:53 Heat of formation + Delta-G solvation = 10.972968 kcal Electronic energy + Delta-G solvation = -21506.427481 eV Core-core repulsion = 18479.741015 eV Total energy + Delta-G solvation = -3026.686466 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.59426 -37.39424 -36.16290 -33.68587 -32.94915 -31.51663 -31.01459 -28.01548 -27.31966 -26.34927 -24.25232 -22.46258 -21.51067 -20.83773 -19.71549 -18.82257 -17.40121 -16.31150 -16.19250 -15.42414 -15.26013 -14.80532 -14.54813 -14.30307 -13.75264 -13.65995 -13.29154 -13.00683 -12.82407 -12.58416 -12.20822 -11.88554 -11.75404 -11.39452 -11.17107 -10.95742 -10.87437 -10.69880 -10.56888 -10.41318 -10.34184 -9.87588 -9.79886 -9.21947 -8.87577 -8.72627 -8.42484 -8.37319 -7.31182 -5.99185 -3.99989 1.37781 1.46031 2.81292 3.34897 3.40999 3.45947 3.78530 4.31554 4.48564 4.59589 4.79664 5.01551 5.04177 5.16277 5.33051 5.36336 5.42255 5.57361 5.61664 5.67199 5.77591 5.85060 5.94757 6.03362 6.09787 6.19858 6.22434 6.35748 6.42162 6.45598 6.53155 6.65776 6.79049 7.05000 7.11651 7.22942 7.26102 7.37595 7.81183 7.84587 8.10649 8.18704 8.53455 9.07267 9.63759 11.11332 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020812 B = 0.005798 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.039850 B = 4828.480699 C = 5434.330188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 C 0.074 3.926 4 N -0.516 5.516 5 C 0.191 3.809 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.273 1.273 14 C 0.106 3.894 15 H 0.114 0.886 16 C -0.119 4.119 17 C -0.064 4.064 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.132 4.132 21 C -0.100 4.100 22 C -0.135 4.135 23 C 0.146 3.854 24 H 0.074 0.926 25 O -0.552 6.552 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.030 0.970 30 H 0.072 0.928 31 H -0.006 1.006 32 H 0.041 0.959 33 H 0.260 0.740 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.616 5.168 -15.722 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.142 4.142 3 C -0.054 4.054 4 N -0.240 5.240 5 C 0.067 3.933 6 C -0.543 4.543 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.208 1.208 12 H -0.214 1.214 13 H -0.198 1.198 14 C -0.004 4.004 15 H 0.132 0.868 16 C -0.157 4.157 17 C -0.064 4.064 18 C -0.134 4.134 19 C -0.133 4.133 20 C -0.150 4.150 21 C -0.118 4.118 22 C -0.135 4.135 23 C 0.087 3.913 24 H 0.091 0.909 25 O -0.356 6.356 26 H 0.107 0.893 27 H 0.111 0.889 28 H 0.127 0.873 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.012 0.988 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 2.537 4.791 -14.962 15.914 hybrid contribution 0.064 0.426 0.213 0.480 sum 2.601 5.216 -14.750 15.860 Atomic orbital electron populations 1.23669 0.95980 1.01111 1.03477 1.22866 0.95439 0.98757 0.97141 1.21369 0.94571 0.94101 0.95322 1.62254 1.19502 1.38396 1.03858 1.19816 0.94040 0.95999 0.83476 1.21162 0.96166 1.44741 0.92214 0.91873 1.24961 0.95091 0.95735 0.98729 1.69955 1.13247 1.49812 1.20868 0.86527 0.80718 0.78701 0.81663 1.20764 1.21364 1.19768 1.22128 0.93788 0.87617 0.96819 0.86840 1.21873 1.02740 1.00417 0.90704 1.20743 0.94579 0.94672 0.96431 1.20672 0.99559 0.99620 0.93578 1.21010 0.98627 0.99325 0.94311 1.20949 0.96857 0.97743 0.99416 1.20603 0.99553 0.99277 0.92413 1.21360 0.98703 0.99352 0.94093 1.21331 0.82516 0.94425 0.93014 0.90863 1.86558 1.26633 1.83423 1.38957 0.89280 0.88906 0.87289 0.95143 0.91019 0.98843 0.94053 0.93001 0.89791 0.89941 0.86404 0.86186 0.86200 0.86515 0.78135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.41 14.29 29.02 0.41 -2.99 16 2 C -0.12 -2.23 8.42 -36.02 -0.30 -2.53 16 3 C 0.07 1.37 3.90 -4.98 -0.02 1.35 16 4 N -0.52 -10.91 4.41 -227.72 -1.00 -11.91 16 5 C 0.19 4.87 4.46 -4.97 -0.02 4.85 16 6 C -0.50 -14.05 8.65 -34.44 -0.30 -14.35 16 7 H 0.06 1.76 7.66 -52.49 -0.40 1.36 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 10 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 14 C 0.11 2.05 2.91 -66.22 -0.19 1.86 16 15 H 0.11 2.47 7.39 -51.93 -0.38 2.08 16 16 C -0.12 -2.09 5.58 -26.77 -0.15 -2.24 16 17 C -0.06 -1.00 4.70 -104.21 -0.49 -1.49 16 18 C -0.12 -1.59 10.04 -39.53 -0.40 -1.99 16 19 C -0.11 -1.35 10.05 -39.62 -0.40 -1.75 16 20 C -0.13 -1.49 10.05 -39.62 -0.40 -1.89 16 21 C -0.10 -1.24 10.04 -39.54 -0.40 -1.63 16 22 C -0.13 -1.97 3.91 -104.21 -0.41 -2.38 16 23 C 0.15 2.35 3.31 -26.85 -0.09 2.26 16 24 H 0.07 1.18 8.02 -51.93 -0.42 0.76 16 25 O -0.55 -8.35 13.36 -35.23 -0.47 -8.82 16 26 H 0.09 1.45 7.84 -52.48 -0.41 1.04 16 27 H 0.09 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.03 0.58 6.26 -51.93 -0.33 0.26 16 30 H 0.07 1.24 5.38 -51.93 -0.28 0.96 16 31 H -0.01 -0.17 6.48 -51.93 -0.34 -0.50 16 32 H 0.04 1.14 6.82 -51.93 -0.35 0.79 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.08 1.57 5.97 -51.93 -0.31 1.26 16 36 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 40 H 0.37 3.83 9.10 45.56 0.41 4.24 16 LS Contribution 323.40 15.07 4.87 4.87 Total: -1.00 -30.65 323.40 -9.03 -39.68 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -4.90 Total: 6.75 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -3.24 Total: -21.44 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: -0.27 Total: -37.79 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.47 Total: -8.82 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.65 -9.03 -39.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292097580.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.656 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds