Wall clock time and date at job start Mon Mar 30 2020 02:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50706 * 120.00240 * 2 1 4 4 N 1.46894 * 109.47247 * 124.99583 * 3 2 1 5 5 C 1.46904 * 111.00178 * 294.08297 * 4 3 2 6 6 C 1.50701 * 109.47142 * 160.63647 * 5 4 3 7 7 H 1.07999 * 120.00091 * 4.71129 * 6 5 4 8 8 C 1.37881 * 119.99829 * 184.71159 * 6 5 4 9 9 N 1.31513 * 119.99924 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99849 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46757 * 90.00251 * 10 8 6 12 12 H 1.48502 * 109.47334 * 209.99755 * 10 8 6 13 13 H 1.48495 * 109.47505 * 330.00279 * 10 8 6 14 14 C 1.46905 * 110.99813 * 170.12738 * 4 3 2 15 15 H 1.09003 * 110.72640 * 175.54756 * 14 4 3 16 16 C 1.54500 * 111.02045 * 51.95173 * 14 4 3 17 17 C 1.51368 * 105.08898 * 268.37672 * 16 14 4 18 18 C 1.38500 * 130.39164 * 162.74726 * 17 16 14 19 19 C 1.38104 * 120.21624 * 179.68542 * 18 17 16 20 20 C 1.38262 * 119.93376 * 359.97438 * 19 18 17 21 21 C 1.38097 * 119.93108 * 0.02562 * 20 19 18 22 22 C 1.38215 * 109.76040 * 342.46518 * 17 16 14 23 23 C 1.51374 * 109.75813 * 0.23814 * 22 17 16 24 24 H 1.09002 * 110.30199 * 136.09823 * 23 22 17 25 25 O 1.42892 * 110.30639 * 258.25310 * 23 22 17 26 26 H 1.08005 * 119.99471 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.00434 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.99961 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.46906 * 4.99215 * 3 2 1 30 30 H 1.09001 * 109.46939 * 244.99436 * 3 2 1 31 31 H 1.08999 * 109.46553 * 280.63401 * 5 4 3 32 32 H 1.08997 * 109.47018 * 40.63211 * 5 4 3 33 33 H 0.96996 * 120.00262 * 180.02562 * 9 8 6 34 34 H 1.09007 * 110.40968 * 149.44523 * 16 14 4 35 35 H 1.08995 * 110.27552 * 27.24011 * 16 14 4 36 36 H 1.08001 * 119.89161 * 359.70785 * 18 17 16 37 37 H 1.08000 * 120.03607 * 179.97438 * 19 18 17 38 38 H 1.07995 * 120.02686 * 179.97438 * 20 19 18 39 39 H 1.08010 * 119.88960 * 179.97438 * 21 20 19 40 40 H 0.96706 * 113.99734 * 298.54602 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 2.2711 1.3441 2.4121 6 6 3.1937 0.8993 3.5175 7 1 4.2355 0.7074 3.3071 8 6 2.7078 0.7374 4.7977 9 7 1.4393 0.9716 5.0540 10 14 3.8511 0.1853 6.1678 11 1 4.4583 1.3758 6.8155 12 1 3.0801 -0.5868 7.1750 13 1 4.9239 -0.6717 5.6022 14 6 3.9106 2.4777 1.0372 15 1 4.5480 2.5386 1.9194 16 6 3.1292 3.7945 0.8312 17 6 3.0400 3.9690 -0.6698 18 6 2.2066 4.7704 -1.4322 19 6 2.3114 4.7706 -2.8093 20 6 3.2515 3.9688 -3.4297 21 6 4.0834 3.1690 -2.6711 22 6 3.9793 3.1669 -1.2901 23 6 4.7601 2.3941 -0.2487 24 1 4.8773 1.3554 -0.5577 25 8 6.0383 2.9973 -0.0386 26 1 -0.5399 0.9354 -0.0004 27 1 -0.5401 -0.9352 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1317 0.0894 30 1 2.6214 1.4025 -0.9314 31 1 1.9166 2.3539 2.6189 32 1 1.4205 0.6652 2.3534 33 1 1.0975 0.8580 5.9546 34 1 3.6680 4.6302 1.2777 35 1 2.1315 3.7131 1.2624 36 1 1.4725 5.3976 -0.9482 37 1 1.6597 5.3963 -3.4010 38 1 3.3346 3.9674 -4.5064 39 1 4.8173 2.5426 -3.1565 40 1 6.6001 3.0125 -0.8256 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292097580.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:53 Heat of formation + Delta-G solvation = -9.585854 kcal Electronic energy + Delta-G solvation = -21507.318979 eV Core-core repulsion = 18479.741015 eV Total energy + Delta-G solvation = -3027.577964 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 273.147 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.84020 -38.70665 -37.46040 -35.00439 -34.96703 -33.08472 -32.04713 -29.52151 -28.99931 -27.65362 -25.94366 -24.08934 -22.79318 -21.91792 -21.14147 -20.34475 -18.74683 -18.29786 -17.39272 -16.93918 -16.47970 -16.25710 -16.11125 -15.73713 -15.14763 -14.93820 -14.62969 -14.34537 -14.10264 -13.99103 -13.93608 -13.36294 -13.10993 -13.04459 -12.74545 -12.63259 -12.42546 -12.33686 -12.09392 -11.93078 -11.74194 -11.63153 -11.29378 -10.97089 -10.60654 -10.22007 -9.77315 -9.52128 -9.04449 -8.17891 -6.26880 0.36804 0.45787 1.39695 1.41586 1.41816 1.53674 2.41417 2.77372 2.95925 3.15552 3.43191 3.49051 3.78131 3.99568 4.09158 4.16952 4.20267 4.22041 4.31115 4.37924 4.57759 4.62284 4.64314 4.73766 4.76747 4.85054 4.96588 5.02475 5.04514 5.15566 5.27227 5.31492 5.51477 5.58424 5.65164 5.71836 5.72636 5.86166 6.08453 6.09888 6.35187 6.59074 6.85668 6.87764 7.41681 8.92497 Molecular weight = 273.15amu Principal moments of inertia in cm(-1) A = 0.020812 B = 0.005798 C = 0.005151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.039850 B = 4828.480699 C = 5434.330188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.148 4.148 3 C 0.084 3.916 4 N -0.520 5.520 5 C 0.211 3.789 6 C -0.520 4.520 7 H 0.057 0.943 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.964 3.036 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.266 1.266 14 C 0.097 3.903 15 H 0.078 0.922 16 C -0.111 4.111 17 C -0.088 4.088 18 C -0.129 4.129 19 C -0.110 4.110 20 C -0.123 4.123 21 C -0.098 4.098 22 C -0.143 4.143 23 C 0.160 3.840 24 H 0.074 0.926 25 O -0.566 6.566 26 H 0.090 0.910 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.020 0.980 30 H 0.089 0.911 31 H -0.034 1.034 32 H 0.017 0.983 33 H 0.263 0.737 34 H 0.078 0.922 35 H 0.056 0.944 36 H 0.122 0.878 37 H 0.151 0.849 38 H 0.156 0.844 39 H 0.145 0.855 40 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.342 5.133 -18.224 19.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.167 4.167 3 C -0.043 4.043 4 N -0.243 5.243 5 C 0.085 3.915 6 C -0.558 4.558 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.573 5.573 10 Si 0.789 3.211 11 H -0.200 1.200 12 H -0.206 1.206 13 H -0.191 1.191 14 C -0.013 4.013 15 H 0.096 0.904 16 C -0.150 4.150 17 C -0.088 4.088 18 C -0.147 4.147 19 C -0.128 4.128 20 C -0.141 4.141 21 C -0.116 4.116 22 C -0.144 4.144 23 C 0.101 3.899 24 H 0.092 0.908 25 O -0.373 6.373 26 H 0.108 0.892 27 H 0.132 0.868 28 H 0.129 0.871 29 H 0.038 0.962 30 H 0.107 0.893 31 H -0.016 1.016 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.140 0.860 37 H 0.168 0.832 38 H 0.174 0.826 39 H 0.163 0.837 40 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 3.285 4.763 -17.499 18.431 hybrid contribution -0.186 0.501 0.906 1.052 sum 3.099 5.264 -16.593 17.681 Atomic orbital electron populations 1.23885 0.95647 1.02183 1.01291 1.22935 0.96096 0.98498 0.99134 1.21321 0.94072 0.94163 0.94716 1.62141 1.19681 1.39581 1.02907 1.19383 0.93193 0.93514 0.85430 1.21446 0.96202 1.44758 0.93391 0.92466 1.25819 0.96623 0.95665 1.01202 1.70074 1.14992 1.50708 1.21574 0.85462 0.78743 0.78452 0.78457 1.20046 1.20628 1.19068 1.22043 0.93841 0.87885 0.97512 0.90392 1.21654 1.00755 0.99405 0.93205 1.20570 0.96672 0.96910 0.94665 1.20869 0.99471 0.99572 0.94764 1.21397 0.98799 0.99204 0.93402 1.21414 0.95381 0.96083 1.01198 1.20936 1.00104 0.99440 0.91117 1.21216 0.98595 0.99545 0.95024 1.20952 0.82675 0.94907 0.91384 0.90801 1.86502 1.26635 1.83294 1.40905 0.89187 0.86821 0.87082 0.96191 0.89320 1.01589 0.96462 0.92776 0.90365 0.92590 0.86002 0.83176 0.82591 0.83714 0.75492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.32 14.29 67.78 0.97 -5.35 16 2 C -0.15 -5.36 8.42 25.65 0.22 -5.15 16 3 C 0.08 3.19 3.90 85.56 0.33 3.53 16 4 N -0.52 -22.97 4.41 -874.38 -3.86 -26.83 16 5 C 0.21 11.36 4.46 85.56 0.38 11.74 16 6 C -0.52 -30.15 8.65 25.60 0.22 -29.93 16 7 H 0.06 3.31 7.66 -2.91 -0.02 3.29 16 8 C 0.00 0.28 5.46 84.66 0.46 0.74 16 9 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 10 Si 0.96 45.40 29.54 68.60 2.03 47.43 16 11 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 14 C 0.10 3.93 2.91 45.88 0.13 4.07 16 15 H 0.08 3.65 7.39 -2.39 -0.02 3.64 16 16 C -0.11 -4.19 5.58 30.57 0.17 -4.02 16 17 C -0.09 -2.73 4.70 -19.59 -0.09 -2.83 16 18 C -0.13 -3.36 10.04 22.30 0.22 -3.13 16 19 C -0.11 -2.20 10.05 22.24 0.22 -1.98 16 20 C -0.12 -2.22 10.05 22.24 0.22 -2.00 16 21 C -0.10 -2.06 10.04 22.30 0.22 -1.83 16 22 C -0.14 -4.01 3.91 -19.59 -0.08 -4.08 16 23 C 0.16 5.13 3.31 30.52 0.10 5.23 16 24 H 0.07 2.33 8.02 -2.39 -0.02 2.31 16 25 O -0.57 -16.85 13.36 -148.98 -1.99 -18.84 16 26 H 0.09 2.92 7.84 -2.91 -0.02 2.89 16 27 H 0.11 3.22 8.06 -2.91 -0.02 3.20 16 28 H 0.11 3.94 8.06 -2.91 -0.02 3.91 16 29 H 0.02 0.79 6.26 -2.39 -0.01 0.78 16 30 H 0.09 3.03 5.38 -2.39 -0.01 3.01 16 31 H -0.03 -1.95 6.48 -2.39 -0.02 -1.97 16 32 H 0.02 1.01 6.82 -2.39 -0.02 0.99 16 33 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.08 2.90 8.14 -2.38 -0.02 2.88 16 35 H 0.06 2.34 5.97 -2.39 -0.01 2.33 16 36 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16 37 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.40 7.42 9.10 -74.05 -0.67 6.75 16 Total: -1.00 -68.53 323.40 0.54 -67.99 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.36 Total: 21.76 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 3.71 Total: -34.99 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -3.57 Total: -83.35 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -1.99 Total: -18.84 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -68.53 0.54 -67.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292097580.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.404 kcal (2) G-P(sol) polarization free energy of solvation -68.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds